Finnish Food Authority

BackgroundEquine inflammatory bowel disease (IBD) is challenging to diagnose and treat. Although the number of horses examined due to suspicion of IBD is increasing, the different treatments in clinical patients and their responses are not well documented. We sought to characterize the demography, signs, clinical and rectal biopsy findings, and treatment response in Finnish horses suspected to have IBD. Horses undergoing clinical examination due to suspected IBD in 2022 and with a good-quality rectal biopsy were selected for the study. General information, signs, clinical and histological findings, and treatment response were collected retrospectively from owners and participating clinics. The effect of variables on symptoms, treatment response, and biopsy results was assessed using statistical methods (significance level P < 0.05).ResultsA total of 152 horses was included. The most common signs were poor performance (68%), nonspecific pain (43%), and irritation/aggression (41%). Intestinal signs were observed in 63% of horses. Sixty-six percent of horses had ultrasonographic changes in the small intestine, and 37% had gastric ulcers. Orthopaedic examination was mentioned in 12% of horses. In rectal biopsy, horses had eosinophilic (35%), lymphoplasmacytic (18%), or neutrophilic (6%) inflammation; 40% had no inflammation. Inflammation was observed mostly in horses aged 5–8 years (P = 0.015). Changes in rectal biopsy were associated with certain behaviour changes (P = 0.002). Sixty-eight percent of horses were treated with medication and dietary change. Glucocorticoids were first-line treatment in 73% of medicated horses. Medication was changed during treatment in 35 horses. Treatment response was considered good in 49% of horses. Access to pasture was associated with a reduction in signs (P = 0.001). Signs, clinical and biopsy findings, and treatment type were not associated with treatment response. Medication change was associated with poorer treatment response.ConclusionsMost horses had at least a partial positive treatment response. Investment in pasture-like management, forage, and exercise regimen may be helpful during out-of-pasture season. Performance issues and nonspecific behaviour changes should be included as possible IBD-related signs, but a more structured clinical diagnostic workup is needed for a reliable assessment of treatment response and to increase the diagnostic value of rectal biopsy.Supplementary InformationThe online version contains supplementary material available at 10.1186/s13028-025-00831-8.

This study compared the effects of using bio-based fertilisers (BBFs) of high (BBFH) or low (BBFL) metal content with conventional mineral superphosphate (SP) fertilisation on dietary exposure of arsenic (As), cadmium (Cd), nickel (Ni) and lead (Pb), in Finland, Denmark, France, Germany, Hungary, and Spain. We estimated changes in the metal content of the following crops: wheat, barley, oat, rye, potato, carrot, sunflower seed, and maize following 100-year scenarios of fertilization with the different products. To estimate changes in chronic dietary exposure to metals via food, we used available national data of food consumption and metal content in target crops. Our results showed low changes to current chronic dietary exposure after using BBFs. Exceedance of the maximum allowed levels of Cd and Pb in food (EU 2023/915) was more rare with low-Cd BBF than with SP mineral fertilizer. Only the BBFH slightly increased the dietary exposure to Cd, although similarly to SP. In conclusion, the studied BBFs did not increase dietary exposure to heavy metals, especially compared with the use of conventional SP mineral fertiliser.

Brown carbon (BrC) is an organic aerosol (OA) component that possesses light-absorbing properties in the UV–Vis spectrum, impacting climate. However, the current understanding of climate repercussions stemming from BrC emissions remains insufficient due to a lack of comprehensive knowledge regarding its chemical makeup, light-absorption, and the role of atmospheric aging in shaping BrC properties. This study investigates BrC in PM1 (particulate matter <1μm) during winter in Helsinki, Finland, in a street canyon and a residential area with wood combustion. The aim was to ascertain BrC sources, chemical composition, and contribution to UV–Vis light absorption. The study utilized a seven-wavelength aethalometer (AE33) to measure black carbon (BC) and BrC light absorptions, and a soot particle aerosol mass spectrometer (SP-AMS) to determine OA composition. An OA source apportionment using positive matrix factorization followed by a multiple regression analysis between BrC absorption and each factor was performed to determine the mass absorption coefficients of BrC (MACBrC) and light absorption contributions of distinct sources across 370–660 nm wavelengths. The BrC UV–Vis absorption relative to the one of BC was higher at 370 nm, with a median contribution of 20.1 % in the residential area and 18.2 % at the traffic site. Residential BrC absorption showed sporadic peaks, while street canyon absorption was lower but consistent. MACBrC was higher for biomass burning organic aerosol but still significant for long-range transported (LRT) and traffic-related aerosols. Hydrocarbon-like organic aerosol exhibited higher MACBrC at 470 nm than at 370 nm. Combined with particulate mass concentrations, biomass burning and LRT contributed the most to light absorption. Uncertainties regarding MACBrC were evaluated. The chemical composition analysis revealed stronger correlations between BrC absorption and SP-AMS-measured ions, especially in residential areas and for polycyclic aromatic hydrocarbons and oxidized aromatics. The study emphasizes the importance of anthropogenic sources in BrC light absorption.

BackgroundBrown rats (Rattus norvegicus) are synanthropic rodents with worldwide distribution, which are known to harbour many zoonotic pathogens and parasites. No systematic zoonotic surveys targeting multiple pathogens and parasites have previously been conducted in urban rats in Finland.AimIn Helsinki, Finland, we explored the presence and prevalence in brown rats of certain pathogens and parasites (including helminths, viruses and bacteria) across potentially zoonotic taxa.MethodsWe opportunistically received rat carcasses from pest management operators and citizens from 2018 to 2023. We searched for heart- or lungworms, performed rat diaphragm digestion to check for Trichinella and morphologically identified intestinal helminths. We assessed virus exposure by immunofluorescence assay or PCR, and detected bacteria by PCR (Leptospira) or culture (Campylobacter).ResultsAmong the rats investigated for helminths, no heart- or lungworms or Trichinella species were detected and the most common finding was the cestode Hymenolepis nana (in 9.7% of individuals sampled, 28/288). For some of the surveyed virus taxa, several rats were seropositive (orthopoxviruses, 5.2%, 11/211; arenaviruses, 2.8%, 6/211; hantaviruses 5.2%, 11/211) or tested positive by PCR (rat hepatitis E virus, 1.8%, 4/216). Campylobacter jejuni (6.6%, 17/259) and Leptospira interrogans (1.2%, 2/163) bacteria were also present in the rat population examined.ConclusionsPrevalences of potentially zoonotic pathogens and parasites in brown rats in Helsinki appeared low. This may explain low or non-existent diagnosis levels of rat-borne pathogen and parasite infections reported in people there. Nevertheless, further assessment of under-diagnosis, which cannot be excluded, would enhance understanding the risks of zoonoses.

Fecal contamination of surface water compromises the usability of surface water for drinking water production due to an increase in human health risks. In this study, we collected surface water samples for two years from the Kokemäki River (Finland). The downstream river stretch is used for feeding production of artificial ground water for a major drinking water treatment plant. The prevalence of Campylobacter species and Salmonella serotypes together with fecal source identifiers targeting general, human, gull, swine, and ruminant were evaluated at 16 sampling sites throughout the studied watershed. We detected Campylobacter spp. from all 16 sampling sites with Campylobacter jejuni and Campylobacter lari as the most detected species. Salmonella spp. was detected in 10 out of 16 sampling sites, with Salmonella Typhimurium being the most common serovar. Regarding spatial variation in the hygienic quality of surface water, the upstream area (urban proximity) and downstream area (agricultural proximity) had higher microbial loads than the middle section of the study area. Samples taken in fall and spring had higher microbial loads than summer and winter samples. The lower ratio of rRNA to rRNA-gene (rDNA) of studied microbes in the winter than in other seasons may indicate low metabolic activity of bacterial targets during winter. The number of gulls, swine, and cattle in the catchment area concorded with the number of fecal source identifiers in the surface water. Further, the prevalence of gull-specific source identifier agreed with the detection of C. coli, C. lari, and S. Typhimurim, whereas the prevalence of swine- and ruminant-specific source identifiers agreed with the detection of C. jejuni and C. coli. Thus, fecal source identifiers are shown to be important tools for monitoring zoonotic pathogens affecting microbial quality of surface water. Further, variation in fecal loads indicates such variation in health risks related to surface water use.

BackgroundExtended-spectrum β-lactamase -producing Enterobacterales (ESBL-E) are important zoonotic pathogens that can cause serious clinical infections, also in horses. Preventing the spread of ESBL-E, especially in the equine hospital environment, is key to reducing the number of difficult-to-treat infections. Estimating the local prevalence of ESBL-E in horses is crucial to establish targeted infection control programs at equine hospitals. We conducted a prevalence and risk factor study in equine patients on admission to an equine teaching hospital in Finland through a rectal ESBL-E screening specimen of the horse and a questionnaire.ResultsThe prevalence of ESBL-E in admitted horses was 3% (5/161, 95% CI 1–7%); none of the tested factors remained statistically significant in multivariate analysis, although antimicrobial treatment within three months was borderline significant (p = 0.052). Extended-spectrum β-lactamase -producing Klebsiella pneumoniae ST6179:CTX-M-15 was detected in three horses using whole-genome sequencing, which in combination with patient records suggested nosocomial transmission. Escherichia coli isolates were ST1250:CTX-M-1 (n = 1), ST1079:CTX-M-1 (n = 1), and ST1245:CTX-M-14 (n = 1). Multiple virulence genes were detected in the ESBL-E isolates. In the ESBL-E positive horses enrolled in a one-year follow-up study, ESBL-E were unlikely to be isolated in rectal screening specimens after the initial positive specimen.ConclusionsThe prevalence of ESBL-E in horses visiting a veterinary teaching hospital in Finland is low, indicating an overall low prevalence estimate in the country’s equine population. No statistically significant risk factors were identified, likely due to the low number of cases. The duration of ESBL-E carriage is likely to be very short in horses.

BackgroundMany countries have applied the wastewater surveillance of the COVID-19 pandemic to their national public health monitoring measures. The most used methods for detecting SARS-CoV-2 in wastewater are quantitative reverse transcriptase–polymerase chain reaction (RT-qPCR) and reverse transcriptase–droplet digital polymerase chain reaction (RT-ddPCR). Previous comparison studies have produced conflicting results, thus more research on the subject is required.ObjectiveThis study aims to compare RT-qPCR and RT-ddPCR for detecting SARS-CoV-2 in wastewater. It also aimed to investigate the effect of changes in the analytical pipeline, including the RNA extraction kit, RT-PCR kit, and target gene assay, on the results. Another aim was to find a detection method for low-resource settings.MethodsWe compared 2 RT-qPCR kits, TaqMan RT-qPCR and QuantiTect RT-qPCR, and RT-ddPCR based on sensitivity, positivity rates, variability, and correlation of SARS-CoV-2 gene copy numbers in wastewater to the incidence of COVID-19. Furthermore, we compared 2 RNA extraction methods, column- and magnetic-bead–based. In addition, we assessed 2 target gene assays for RT-qPCR, N1 and N2, and 2 target gene assays for ddPCR N1 and E. Reverse transcription strand invasion-based amplification (RT-SIBA) was used to detect SARS-CoV-2 from wastewater qualitatively.ResultsOur results indicated that the most sensitive method to detect SARS-CoV-2 in wastewater was RT-ddPCR. It had the highest positivity rate (26/30), and its limit of detection was the lowest (0.06 gene copies/µL). However, we obtained the best correlation between COVID-19 incidence and SARS-CoV-2 gene copy number in wastewater using TaqMan RT-qPCR (correlation coefficient [CC]=0.697, P<.001). We found a significant difference in sensitivity between the TaqMan RT-qPCR kit and the QuantiTect RT-qPCR kit, the first having a significantly lower limit of detection and a higher positivity rate than the latter. Furthermore, the N1 target gene assay was the most sensitive for both RT-qPCR kits, while no significant difference was found between the gene targets using RT-ddPCR. In addition, the use of different RNA extraction kits affected the result when the TaqMan RT-qPCR kit was used. RT-SIBA was able to detect SARS-CoV-2 RNA in wastewater.ConclusionsAs our study, as well as most of the previous studies, has shown RT-ddPCR to be more sensitive than RT-qPCR, its use in the wastewater surveillance of SARS-CoV-2 should be considered, especially if the amount of SARS-CoV-2 circulating in the population was low. All the analysis steps must be optimized for wastewater surveillance as our study showed that all the analysis steps including the compatibility of the RNA extraction, the RT-PCR kit, and the target gene assay influence the results. In addition, our study showed that RT-SIBA could be used to detect SARS-CoV-2 in wastewater if a qualitative result is sufficient.

<strong class="journal-contentHeaderColor">Abstract.</strong> Brown carbon (BrC) is a fraction of Organic Aerosols (OA) that absorbs radiation in the ultraviolet and short visible wavelengths. Its contribution to radiative forcing is uncertain due to limited knowledge of its imaginary refractive index (<em>k </em>). This study investigates the variability of <em>k</em> for OA from wildfires, residential, shipping, and traffic emission sources over Europe. The MONARCH atmospheric chemistry model simulated OA concentrations and source contributions, feeding an offline optical tool to constrain <em>k</em> values at 370 nm. The model was evaluated against OA mass concentrations from Aerosol Chemical Speciation Monitors (ACSM) and filter sample measurements, and aerosol light absorption measurements at 370 nm derived from Aethalometer^TM from 12 sites across Europe. Results show that MONARCH captures the OA temporal variability across environments (regional, suburban and urban background). Residential emissions are a major OA source in colder months, while secondary organic aerosols (SOA) dominate in warmer periods. Traffic is a minor primary OA contributor. Biomass and coal combustion significantly influence OA absorption, with shipping emissions also notable near harbors. Optimizing <em>k</em> values at 370 nm revealed significant variability in OA light absorption, influenced by emission sources and environmental conditions. Derived <em>k</em> values for biomass burning (0.03 to 0.13), residential (0.008 to 0.13), shipping (0.005 to 0.08), and traffic (0.005 to 0.07) sources improved model representation of OA absorption compared to a constant <em>k</em>. Introducing such emission source-specific constraints is an innovative approach to enhance OA absorption in atmospheric models.

The purpose of this study was to evaluate the potential of wastewater-based surveillance in the monitoring of epidemics at the national level in Finland. The 2021–2022 respiratory syncytial virus epidemic in Finland was analyzed from wastewater and the Finnish National Infectious Diseases Register. The study was performed using 150 samples that were collected monthly from May 2021 to July 2022 from ten wastewater treatment plants that cover 40% of the Finnish population. Respiratory syncytial virus detection in 24 h composite samples of influent wastewater was performed using reverse-transcription quantitative polymerase chain reaction (RT-qPCR). Respiratory syncytial virus wastewater data were positively correlated with the National Infectious Diseases Register-based sampling week incidence (correlation coefficient, CC min = 0.412, max = 0.865) and the four-week cumulative incidence (CC min = 0.482, max = 0.814), showing the potential of wastewater-based surveillance in estimating the course of epidemics. When the register-based incidence of respiratory syncytial virus was at least four cases/100,000 persons/sampling week, it was detected in all wastewater samples. This study showed that wastewater surveillance can be used to surveil respiratory syncytial virus epidemics at the national level, and its potential in the surveillance of other epidemics should be explored further.