R3 Animal

Clade 2.3.4.4b highly pathogenic avian influenza (HPAI) H5N1 virus was detected in the South American sea lions found dead in Santa Catarina, Brazil, in October 2023. Whole genome sequencing and comparative phylogenetic analysis were conducted to investigate the origin, genetic diversity, and zoonotic potentials of the H5N1 viruses. The H5N1 viruses belonged to the genotype B3.2 of clade 2.3.4.4b H5N1 virus, which was identified in North America and disseminated to South America. They have acquired new amino acid substitutions related to mammalian host affinity. Our study provides insights into the genetic landscape of HPAI H5N1 viruses in Brazil, highlighting the continuous evolutionary processes contributing to their possible adaptation to mammalian hosts.

A ordem Procellariiformes reúne grande número de espécies ameaçadas de extinção, e sua diversidade no Brasil implica responsabilidades para a conservação. Ameaças como a ingestão de plásticos impactam negativamente os albatrozes e petréis em nível global. Assim, realizamos a quantificação e classificação de resíduos poliméricos em espécimes de Procellariiformes encontrados em praias de Florianópolis ou capturados incidentalmente na pesca industrial no sul e sudeste do Brasil. Foram analisados tratos digestórios de 44 espécimes pertencentes a nove espécies. Para identificação da localização dos itens ingeridos, o trato digestivo foi separado em três porções – esôfago, proventrículo e ventrículo. Os resíduos > 5mm foram medidos e classificados em “fragmentos plásticos”, pellets, nylon e outros. Macroplásticos foram encontrados em 13 indivíduos de seis espécies das famílias Diomedeidae e Procellariidae. Procellaria aequinoctialis apresentou as maiores frequências de macroplástico (80%) dos espécimes analisados. No geral, os fragmentos plásticos foram o tipo de resíduo mais frequente. O ventrículo foi a porção do trato digestório com maior quantidade de macroplástico. Evidências deste estudo reforçam que Procellariiformes estão consumindo plástico no Atlântico Sul. A quantificação, o monitoramento e a padronização de análises são importantes para subsidiar e orientar medidas de manejo e a implementação da Política Nacional de Resíduos Sólidos, visando a conservação dos ambientes marinhos e fauna associada.

The Cuvier's beaked whale (CBW; Ziphius cavirostris) is a cosmopolitan marine mammal found in deep tropical and temperate waters of all oceans. CBW strandings have been recorded sporadically in Brazil; however, there is lack of information available regarding their causes of stranding and/or death. Herein, we report the epidemiologic, pathologic, morphologic parasitologic features and molecular identification of arterial and renal crassicaudiasis by Crassicauda sp. in three geographically and chronologically distant CBW stranded off Brazil. CBW-1 was an adult male stranded dead in Rio Grande do Sul State. CBW-2 was an adult female that stranded alive in Sergipe State and died shortly after. CBW-3 was and adult male that stranded dead in Santa Catarina State. The most relevant pathologic findings in these three CBW were severe, chronic proliferative mesenteric and caudal aortic endarteritis and chronic granulomatous and fibrosing interstitial nephritis with renicular atrophy and loss, and numerous intralesional Crassicauda sp. nematodes. Furthermore, CBW-1 had concomitant gram-negative bacterial pneumonia and pulmonary and hepatic thromboembolism. Morphologic analysis of renal adult nematodes identified Crassicauda sp. in the three CBW. Molecular analyses targeting the 18S and ITS-2 ribosomal loci of renal nematodes in CBW-2 and CBW-3 identified C. anthonyi. It is believed that severe arterial and renal crassicaudiasis likely resulted or contributed significantly to morbidity and death of these animals. These results expand the known geographical range of occurrence of crassicaudiasis in CBW. Specifically, the present study provides the first accounts of arterial and renal crassicaudiasis in CBW off the southern hemisphere, specifically in CBW off Brazil, and to the authors' knowledge, it is the first record of C. anthonyi in the southern Atlantic Ocean.

Because of their usually cryptic behaviour, most knowledge on the biology of beaked whales are from records of stranded animals. Although the Cuvier’s beaked whale (Ziphius cavirostris) is the best known species of the ziphiidae family, little information on its reproduction is available. Here we report on the stranding of a dead pregnant female with clear signs of anthropogenic impact, including the presence of a fishing artefact in the stomach. The region of the stranding (north-eastern coast of Brazil) is an area of increasing interest for oil and gas exploitation. Conservation concerns may arise from findings such as the one presented and discussed here.

Abstract Historical catch records from whaling activity are crucial for assessments of whale populations. However, several gaps in the exploitation history for many populations from before the twentieth century create limitations that may lead to overestimates of the recovery of these populations. The history of modern whaling along the Brazilian coast is relatively well known. However, several questions relating to the pre‐modern period, during and before the nineteenth century, remain unanswered. For example, the level of exploitation of humpback whalesMegaptera novaeangliaeand southern right whalesEubalaena australisin this period is unknown.Pre‐modern whaling in Brazil began in 1602 and lasted until the 1920s. Whales were captured using manual harpoons from either rowing boats or sailing boats, and processed at land stations called ‘armações’. A review of the history and oil production of these stations indicates that substantial catches occurred.Pre‐modern whaling records also indicate the collapse of the southern right whale population in the western South Atlantic Ocean. Increasingly rare reports of sightings for the nineteenth century and the closing of the last armação in the breeding grounds off southern Brazil indicate that this population collapsed by 1830.Armações operating in north‐eastern Brazil remained active through the 1800s, and targeted humpback whales until modern whaling techniques were introduced in the early 1900s. It is estimated that between approximately 11000 and 32000 individuals of this species were captured at these coastal whaling stations from 1830 to 1924.

Cetacean lacaziosis-like disease or lobomycosis-like disease (LLD) is a chronic skin condition caused by a non-cultivable yeast of the order Onygenales, which also includes Lacazia loboi, as well as Paracoccidioides brasiliensis and P. lutzii, respectively responsible for lacaziosis and paracoccidioidomycosis in humans. Complete identification and phylogenetic classification of the LLD etiological agent still needs to be elucidated, but preliminary phylogenetic analyses have shown a closer relationship of the LLD agent to Paracoccidioides spp. than to L. loboi. Cases of LLD in South American cetaceans based on photographic identification have been reported; however, to date, only 3 histologically confirmed cases of LLD have been described. We evaluated multiple tissue samples from 4 Tursiops truncatus stranded in the states of Santa Catarina (n = 3) and Rio Grande do Sul (n = 1), southern Brazil. Macroscopically, all animals presented lesions consistent with LLD. Hematoxylin-eosin, periodic acid-Schiff, Grocott's methenamine silver, and Mayer's mucicarmin stains were used for histological evaluation. Microscopically, numerous refractile yeasts (4-9 µm in diameter) were observed in skin samples (4/4), and for the first time in dolphins, also in a skeletal muscle abscess (1/4). Immunohistochemistry using anti-P. brasiliensis glycoprotein gp43 as a primary antibody, which is known to cross-react with L. loboi and the LLD agent, was performed and results were positive in all 4 cases. We describe 3 new cases of LLD in cetaceans based on histopathology and immunohistochemistry. This is the first report of LLD in the muscle of cetaceans.