• Home
  • Search
  • A Multiscale Spatial Modeling Framework for the Germinal Center Response.
  • Open Access IconOpen Access
  • https://doi.org/10.1101/2024.01.26.577491Copy DOI Icon

A Multiscale Spatial Modeling Framework for the Germinal Center Response.

Show More
  • Abstract
  • Literature Map
  • References
  • Similar Papers
Abstract

The germinal center response or reaction (GCR) is a hallmark event of adaptive humoral immunity. Unfolding in the B cell follicles of the secondary lymph organs, a GC culminates in the production of high-affinity antibody-secreting plasma cells along with memory B cells. By interacting with follicular dendritic cells (FDC) and T follicular helper (Tfh) cells, GC B cells exhibit complex spatiotemporal dynamics. Driving the B cell dynamics are the intracellular signal transduction and gene regulatory network that responds to cell surface signaling molecules, cytokines, and chemokines. As our knowledge of the GC continues to expand in depth and in scope, mathematical modeling has become an important tool to help disentangle the intricacy of the GCR and inform novel mechanistic and clinical insights. While the GC has been modeled at different granularities, a multiscale spatial simulation framework - integrating molecular, cellular, and tissue-level responses - is still rare. Here, we report our recent progress toward this end with a hybrid stochastic GC framework developed on the Cellular Potts Model-based CompuCell3D platform. Tellurium is used to simulate the B cell intracellular molecular network comprising NF-κB, FOXO1, MYC, AP4, CXCR4, and BLIMP1 that responds to B cell receptor (BCR) and CD40-mediated signaling. The molecular outputs of the network drive the spatiotemporal behaviors of B cells, including cyclic migration between the dark zone (DZ) and light zone (LZ) via chemotaxis; clonal proliferative bursts, somatic hypermutation, and DNA damage-induced apoptosis in the DZ; and positive selection, apoptosis via a death timer, and emergence of plasma cells in the LZ. Our simulations are able to recapitulate key molecular, cellular, and morphological GC events including B cell population growth, affinity maturation, and clonal dominance. This novel modeling framework provides an open-source, customizable, and multiscale virtual GC simulation platform that enables qualitative and quantitative in silico investigations of a range of mechanic and applied research questions in future.

Similar Papers
  • Book Chapter
  • Citations5

Ultrastructural Heterogeneity of Follicular Dendritic Cells in the Human Tonsil

  • Jan 01, 1993
  • Boletín del Seminario de Estudios de Arte y Arqueología: BSAA
  • Louk H P M Rademakers +1
  • Research Article
  • Citations125

Phenotypic and Morphological Properties of Germinal Center Dark Zone Cxcl12-Expressing Reticular Cells.

  • Nov 15, 2015
  • Journal of immunology (Baltimore, Md. : 1950)
  • Lauren B Rodda +4
  • Research Article
  • Citations32

The follicular dendritic cell network in secondary follicles of human palatine tonsils and spleens

  • Mar 11, 2011
  • Histochemistry and Cell Biology
  • Birte Steiniger +2
  • Book Chapter
  • Citations2

Chapter 23 - The Regulation of IgA Production

  • Jan 01, 2015
  • Mucosal Immunology
  • Sidonia Fagarasan +1
  • PDF
  • Research Article
  • Citations3

Mediastinal Follicular Dendritic Cell Sarcoma With Underlying Sjogren's Syndrome.

  • Apr 17, 2023
  • Cureus
  • Davong D Phrathep +5
  • Research Article
  • Citations6

A one-shot germinal center model under protein structural stability constraints

  • Mar 15, 2013
  • Physical Biology
  • Sana Raoof +2
  • Research Article

ヒトろ胞樹状細胞(follicular dendritic cell: FDC)における接着分子の発現 特にfibronectin‐およびlaminin‐receptorについて

  • Jan 01, 1995
  • Journal of the Japan Society of the Reticuloendothelial System
  • Takashi Ogata +10
  • Research Article

ヒトリンパろ胞内サイトカイン及びサイトカイン・レセプターの発現

  • Jan 01, 1995
  • Journal of the Japan Society of the Reticuloendothelial System
  • Kazuhiko Yamada +11
  • Research Article
  • Citations139

Class Switch Recombination and Somatic Hypermutation in Early Mouse B Cells Are Mediated by B Cell and Toll-like Receptors

  • Jul 01, 2007
  • Immunity
  • Jin-Hwan Han +5
  • Research Article

B cell-intrinsic STAT3 regulates the germinal center dark zone

  • May 01, 2020
  • The Journal of Immunology
  • Sathi Babu Chodisetti +5
  • Research Article
  • Citations43

TuJ1 (class III β-tubulin) expression suggests dynamic redistribution of follicular dendritic cells in lymphoid tissue

  • Jan 18, 2005
  • European Journal of Cell Biology
  • Seungkoo Lee +5
  • Research Article
  • Citations1

Germinal center organization mediated by T-bet dependent expression of CXCR3 and CCR6

  • May 01, 2019
  • The Journal of Immunology
  • Jessica Nicole Peel +4
  • Research Article
  • Citations67

Mechanisms underpinning poor antibody responses to vaccines in ageing

  • Nov 10, 2021
  • Immunology Letters
  • Jia Le Lee +1
  • Research Article

MYC to BCL6 State-Transitions Determine Cell Size and Metabolic Fluctuations and Define a Novel Biorhythm in B-Cell Malignancies

  • Nov 02, 2023
  • Blood
  • Zhangliang Cheng +2
  • Research Article
  • Citations54

A Qualitative and Quantitative Morphologic Study of Peyer's Patches of the Mouse

  • Jan 01, 1977
  • Archivum histologicum japonicum
  • Kazuhiro Abe +1
Cactus Communications logo

Copyright 2026 Cactus Communications. All rights reserved.