A Novel Multithreaded Algorithm for Extracting Maximal Chordal Subgraphs

Listing, generating or enumerating objects of specified type is one of the principal tasks in algorithmics. In graph algorithms one often enumerates vertex subsets satisfying a certain property. We study the enumeration of all minimal connected dominating sets of an input graph from various graph classes of bounded chordality. We establish enumeration algorithms as well as lower and upper bounds for the maximum number of minimal connected dominating sets in such graphs. In particular, we present algorithms to enumerate all minimal connected dominating sets of chordal graphs in time O(1.7159^n), of split graphs in time O(1.3803^n), and of AT-free, strongly chordal, and distance-hereditary graphs in time O^*(3^{n/3}), where n is the number of vertices of the input graph. Our algorithms imply corresponding upper bounds for the number of minimal connected dominating sets for these graph classes.

A polynomial algorithm for the k-cluster problem on the interval graphs

An output-polynomial algorithm for the listing of minimal dominating sets in graphs is a challenging open problem and is known to be equivalent to the well-known Transversal problem which asks for an output-polynomial algorithm for listing the set of minimal hitting sets in hypergraphs. We give a polynomial delay algorithm to list the set of minimal dominating sets in chordal graphs, an important and well-studied graph class where such an algorithm was open for a while.

Matchability and [formula omitted]-maximal matchings

We introduce a new subclass of chordal graphs that generalizes the class of split graphs, which we call well-partitioned chordal graphs. A connected graph G is a well-partitioned chordal graph if there exist a partition P of the vertex set of G into cliques and a tree T having P as a vertex set such that for distinct X,Y∈P, (1) the edges between X and Y in G form a complete bipartite subgraph whose parts are some subsets of X and Y, if X and Y are adjacent in T, and (2) there are no edges between X and Y in G otherwise. A split graph with vertex partition (C,I) where C is a clique and I is an independent set is a well-partitioned chordal graph as witnessed by a star T having C as the center and each vertex in I as a leaf, viewed as a clique of size 1. We characterize well-partitioned chordal graphs by forbidden induced subgraphs, and give a polynomial-time algorithm that given a graph, either finds an obstruction, or outputs a partition of its vertex set that asserts that the graph is well-partitioned chordal.We observe that there are problems, for instance Densestk-Subgraph and b-Coloring, that are polynomial-time solvable on split graphs but become NP -hard on well-partitioned chordal graphs. On the other hand, we show that the Geodetic Set problem, known to be NP -hard on chordal graphs, can be solved in polynomial time on well-partitioned chordal graphs.We also answer two combinatorial questions on well-partitioned chordal graphs that are open on chordal graphs, namely that each well-partitioned chordal graph admits a polynomial-time constructible tree 3-spanner, and that each (2-connected) well-partitioned chordal graph has a vertex that intersects all its longest paths (cycles).

Graph search, the process of visiting vertices in a graph in a specific order, has demonstrated magical powers in many important algorithms. But a systematic study was only initiated by Corneil et al. a decade ago, and only by then we started to realize how little we understand it. Even the apparently naive question vertex can be the last visited by a graph search algorithm, known as the end vertex problem, turns out to be quite elusive. We give a full picture of all maximum cardinality searches on chordal graphs, which implies a polynomial-time algorithm for the end vertex problem of maximum cardinality search. It is complemented by a proof of NP-completeness of the same problem on weakly chordal graphs. We also show linear-time algorithms for deciding end vertices of breadth-first searches on interval graphs, and end vertices of lexicographic depth-first searches on chordal graphs. Finally, we present 2^n * n^O(1)-time algorithms for deciding the end vertices of breadth-first searches, depth-first searches, and maximum cardinality searches on general graphs.

Partitioning subclasses of chordal graphs with few deletions

We provide polynomial-time algorithms for counting the number of perfect matchings in chain graphs, cochain graphs, and threshold graphs. These algorithms are based on newly developed subdivision schemes that we call a recursive decomposition. On the other hand, we show the $\sharp$ P-completeness for counting the number of perfect matchings in chordal graphs, split graphs and chordal bipartite graphs. This is in an interesting contrast with the fact that counting the number of independent sets in chordal graphs can be done in linear time.

Given a simple undirected graph G = (V, E) and an integer k < |V|, the Sparsest k-Subgraph problem asks for a set of k vertices which induces the minimum number of edges. As a generalization of the classical independent set problem, Sparsest k-Subgraph is ????-hard and even not approximable unless ?????? in general graphs. Thus, we investigate Sparsest k-Subgraph in graph classes where independent set is polynomial-time solvable, such as subclasses of perfect graphs. Our two main results are the ????-hardness of Sparsest k-Subgraph on chordal graphs, and a greedy 2-approximation algorithm. Finally, we also show how to derive a PTAS for Sparsest k-Subgraph on proper interval graphs.

This paper presents a new register assignment heuristic for procedures in SSA Form, whose interference graphs are chordal; the heuristic is called optimistic chordal coloring (OCC). Previous register assignment heuristics eliminate copy instructions via coalescing, in other words, merging nodes in the interference graph. Node merging, however, can not preserve the chordal graph property, making it unappealing for SSA-based register allocation. OCC is based on graph coloring, but does not employ coalescing, and, consequently, preserves graph chordality, and does not increase its chromatic number; in this sense, OCC is conservative as well as optimistic. OCC is observed to eliminate at least as many dynamically executed copy instructions as iterated register coalescing (IRC) for a set of chordal interference graphs generated from several Mediabench and MiBench applications. In many cases, OCC and IRC were able to find optimal or near-optimal solutions for these graphs. OCC ran 1.89x faster than IRC, on average.

Fast algorithms for generating all maximal independent sets of interval, circular-arc and chordal graphs

Parameterized and exact algorithms for class domination coloring

It is known that any chordal graph on n vertices can be represented as the intersection of n subtrees in a tree on n nodes [5]. This fact is recently used in [2] to generate random chordal graphs on n vertices by generating n subtrees of a tree on n nodes. It follows that the space (and thus time) complexity of such an algorithm is at least the sum of the sizes of the generated subtrees assuming that a tree is given by a set of nodes. In [2], this complexity was mistakenly claimed to be linear in the number m of edges of the generated chordal graph. This error is corrected in [3] where the space complexity is shown to be \(\varOmega (m n^{1/4})\). The exact complexity of the algorithm is left as an open question.

A vertex subset I of a graph G is called a k-path vertex cover if every path on k vertices in G contains at least one vertex from I. The k -Path Vertex Cover Reconfiguration (k -PVCR) problem asks if one can transform one k-path vertex cover into another via a sequence of k-path vertex covers where each intermediate member is obtained from its predecessor by applying a given reconfiguration rule exactly once. We investigate the computational complexity of k -PVCR from the viewpoint of graph classes under the well-known reconfiguration rules: \(\mathsf {TS}\), \(\mathsf {TJ}\), and \(\mathsf {TAR}\). The problem for \(k=2\), known as the Vertex Cover Reconfiguration (VCR) problem, has been well-studied in the literature. We show that certain known hardness results for VCR on different graph classes including planar graphs, bounded bandwidth graphs, chordal graphs, and bipartite graphs, can be extended for k -PVCR. In particular, we prove a complexity dichotomy for k -PVCR on general graphs: on those whose maximum degree is 3 (and even planar), the problem is \(\mathtt {PSPACE}\)-complete, while on those whose maximum degree is 2 (i.e., paths and cycles), the problem can be solved in polynomial time. Additionally, we also design polynomial-time algorithms for k -PVCR on trees under each of \(\mathsf {TJ}\) and \(\mathsf {TAR}\). Moreover, on paths, cycles, and trees, we describe how one can construct a reconfiguration sequence between two given k-path vertex covers in a yes-instance. In particular, on paths, our constructed reconfiguration sequence is shortest.

In this paper, we consider the Minimum Independent Dominating Set problem and develop exact exponential algorithms that break the trivial O(2|V |) bound. A simple \(O^{*}({\sqrt{3}}^{|V|})\) time algorithm is developed to solve this problem on general graphs. For sparse graphs, e.g. graphs with degree bounded by 3 and 4, we show that a few new branching techniques can be applied to these graphs and the resulting algorithms have time complexities O *(20.465|V |) and O *(20.620|V |), respectively. All our algorithms only need polynomial space.