A Proposition for Describing Real-World Network Dynamics

Brain networks are commonly used to identify cognitive neurobehavioral and brain conscious disorders. Most of the studies on state networks focus on the characterization and expression of resting-state brain networks, but there are few studies on dynamic brain networks. In fact, the analysis of dynamic brain networks can find more valuable information, because it can dynamically depict the dynamic characteristics of brain networks from the time dimension. However, too much consideration of the expression of dynamic networks will naturally hide many of its static characteristics. Therefore, this study proposes a tense-based multi-view fusion fuzzy learning model (TM-FL) to identify dynamic brain networks. TM-FL relearns the features of adjacent networks in high-dimensional space, mining the dynamic features between adjacent brain networks. Best of all, TM-FL can also capture resting information in the brain network at different times in the source space. The fuzzy TSK-based TM-FL also possesses the strong interpretability inherent in fuzzy systems. In this study, a fusion mechanism is designed to effectively integrate decision support under dynamic and static features, and enhance the classification and generalization performance of the proposed fuzzy classification model. For the proposed fusion fuzzy mechanism, Simon entropy is cleverly set as the regular term of the objective function, which not only constrains the decision weight, but also avoids the embarrassment of making mistakes in a leading decision. Experimental results show that TM-FL has good classification, generalization and interpretable capabilities in recognition of multi-channel epileptic electroencephalographic (EEG) signals.

Auditory-verbal hallucinations (AVH) are a key symptom of schizophrenia. Recent neuroimaging studies examining dynamic functional connectivity suggest that disrupted dynamic interactions between brain networks characterize complex symptoms in mental illness including schizophrenia. Studying dynamic connectivity may be especially relevant for hallucinations, given their fluctuating phenomenology. Indeed, it remains unknown whether AVH in schizophrenia are directly related to altered dynamic connectivity within and between key brain networks involved in auditory perception and language, emotion processing, and top-down control. In this study, we used dynamic connectivity approaches including sliding window and k-means to examine dynamic interactions among brain networks in schizophrenia patients with and without a recent history of AVH. Dynamic brain network analysis revealed that patients with AVH spent less time in a ‘network-antagonistic’ brain state where the default mode network (DMN) and the language network were anti-correlated, and had lower probability to switch into this brain state. Moreover, patients with AVH showed a lower connectivity within the language network and the auditory network, and lower connectivity was observed between the executive control and the language networks in certain dynamic states. Our study provides the first neuroimaging evidence of altered dynamic brain networks for understanding neural mechanisms of AVH in schizophrenia. The findings may inform and further strengthen cognitive models of AVH that aid the development of new coping strategies for patients.

Emotion affects human being's health to a great extent and it attracts lots of attention recently. Objective measurements are necessary for identifying various emotion states. As a powerful technique on high temporal resolution, Electroencephalogram (EEG) provides an effective way to quantify emotion impersonally, especially uncovering the dynamic characteristics. The implementation of time window length is one popular method for extracting dynamic interactions in the brain network. In this paper, the effect of time window length is revealed on dynamic brain network investigation. A quantitative pipeline is proposed based on brain network extraction and community mining in this paper. The EEG data of healthy subjects are recorded under sadness, happiness and neutral emotions that induced through video stimulation. Since beta (13-30Hz) band EEG signals are believed to play important role in cognitive processing, this paper focuses on the beta band EEG signals. Phase locking value (PLV) was adopted to calculate the functional interactions among brain areas. A nonoverlapping time window was taken in to produce dynamic connections. As a comparison, the dynamic brain networks were extracted by the length of 2s and 5S sliding time windows respectively. Later, the Louvain algorithm was used to detect the communities. As the member of community changes over time, the stationarity is quantified to measure the evolution of the varying communities in the brain network. The preliminary results illustrated that significant difference exists among communities from the beta band EEG networks that derived from 2s and 5s time windows separately. It is suggested that the choice of sliding time window will affect the stationarity quantification of the dynamic evolution of the brain network under various emotional conditions. It is necessary to pay attention to the choice of time length window when uncovering dynamic brain network changes in the future.

One of human brain's remarkable traits lies in its capacity to dynamically coordinate the activities of multiple brain regions or networks, adapting to an externally changing environment. Studying the dynamic functional brain networks (DFNs) and their role in perception, assessment, and action can significantly advance our comprehension of how the brain responds to patterns of sensory input. Movies provide a valuable tool for studying DFNs, as they offer a naturalistic paradigm that can evoke complex cognitive and emotional experiences through rich multimodal and dynamic stimuli. However, most previous research on DFNs have predominantly concentrated on the resting-state paradigm, investigating the topological structure of temporal dynamic brain networks generated via chosen templates. The dynamic spatial configurations of the functional networks elicited by naturalistic stimuli demand further exploration. In this study, we employed an unsupervised dictionary learning and sparse coding method combing with a sliding window strategy to map and quantify the dynamic spatial patterns of functional brain networks (FBNs) present in naturalistic functional magnetic resonance imaging (NfMRI) data, and further evaluated whether the temporal dynamics of distinct FBNs are aligned to the sensory, cognitive, and affective processes involved in the subjective perception of the movie. The results revealed that movie viewing can evoke complex FBNs, and these FBNs were time-varying with the movie storylines and were correlated with the movie annotations and the subjective ratings of viewing experience. The reliability of DFNs was also validated by assessing the Intra-class coefficient (ICC) among two scanning sessions under the same naturalistic paradigm with a three-month interval. Our findings offer novel insight into comprehending the dynamic properties of FBNs in response to naturalistic stimuli, which could potentially deepen our understanding of the neural mechanisms underlying the brain's dynamic changes during the processing of visual and auditory stimuli.

The human brain operates as a complex network, and understanding its functional connectivity is a core challenge in neuroscience. Functional near-infrared spectroscopy (fNIRS) offers a non-invasive, portable method for studying brain activity and connectivity, providing valuable insights into the brain's network dynamics. In this study, we used fNIRS to examine the functional connectivity of the human brain during the Dual n-back task, a cognitive challenge that varies in memory load (0-back, 1-back, and 2-back). Data were collected from 24 channels in the frontal cortex and pre-processed with discrete wavelet transform. Functional connectivity matrices for each task level were calculated using correlation analysis, and graph theory metrics such as clustering coefficient and local and global efficiency were assessed. Statistical comparisons (t-tests and ANOVA) revealed significant differences in these metrics across memory load levels, with higher memory loads leading to altered brain connectivity patterns (p < 0.05 for clustering coefficient and local efficiency, p < 0.04 for global efficiency). These findings suggest that as cognitive demand increases, the functional connectivity of the brain's frontal network changes, reflecting the dynamic nature of brain activity during complex tasks. This research highlights the potential of fNIRS for exploring brain network functions and has broader implications for understanding cognitive processes and developing neurocognitive diagnostics and interventions.

Objective. Schizophrenia (SCZ) is a severe mental disorder associated with persistent or recurrent psychosis, hallucinations, delusions, and thought disorders that affect approximately 26 million people worldwide, according to the World Health Organization. Several studies encompass machine learning (ML) and deep learning algorithms to automate the diagnosis of this mental disorder. Others study SCZ brain networks to get new insights into the dynamics of information processing in individuals suffering from the condition. In this paper, we offer a rigorous approach with ML and deep learning techniques for evaluating connectivity matrices and measures of complex networks to establish an automated diagnosis and comprehend the topology and dynamics of brain networks in SCZ individuals. Approach. For this purpose, we employed an functional magnetic resonance imaging (fMRI) and electroencephalogram (EEG) dataset. In addition, we combined EEG measures, i.e. Hjorth mobility and complexity, with complex network measurements to be analyzed in our model for the first time in the literature. Main results. When comparing the SCZ group to the control group, we found a high positive correlation between the left superior parietal lobe and the left motor cortex and a positive correlation between the left dorsal posterior cingulate cortex and the left primary motor. Regarding complex network measures, the diameter, which corresponds to the longest shortest path length in a network, may be regarded as a biomarker because it is the most crucial measure in different data modalities. Furthermore, the SCZ brain networks exhibit less segregation and a lower distribution of information. As a result, EEG measures outperformed complex networks in capturing the brain alterations associated with SCZ. Significance. Our model achieved an area under receiver operating characteristic curve (AUC) of 100% and an accuracy of 98.5% for the fMRI, an AUC of 95%, and an accuracy of 95.4% for the EEG data set. These are excellent classification results. Furthermore, we investigated the impact of specific brain connections and network measures on these results, which helped us better describe changes in the diseased brain.

Objective:Modeling dynamic neuronal activity within brain networks enables the precise tracking of rapid temporal fluctuations across different brain regions. However, current approaches in computational neuroscience fall short of capturing and representing the spatiotemporal dynamics within each brain network. We developed a novel weakly supervised spatiotemporal dense prediction model capable of generating personalized 4D dynamic brain networks from fMRI data, providing a more granular representation of brain activity over time.Methods:We developed a model that leverages the vision transformer (ViT) as its backbone, jointly encoding spatial and temporal information from fMRI inputs using two different configurations: space-time and sequential encoders. The model generates 4D brain network maps that evolve over time, capturing dynamic changes in both spatial and temporal dimensions. In the absence of ground-truth data, we used spatially constrained windowed independent component analysis (ICA) components derived from fMRI data as weak supervision to guide the training process. The model was evaluated using large-scale resting-state fMRI datasets, and statistical analyses were conducted to assess the effectiveness of the generated dynamic maps using various metrics.Results:Our model effectively produced 4D brain maps that captured both inter-subject and temporal variations, offering a dynamic representation of evolving brain networks. Notably, the model demonstrated the ability to produce smooth maps from noisy priors, effectively denoising the resulting brain dynamics. Additionally, statistically significant differences were observed in the temporally averaged brain maps, as well as in the summation of absolute temporal gradient maps, between patients with schizophrenia and healthy controls. For example, within the Default Mode Network (DMN), significant differences emerged in the temporally averaged space-time configurations, particularly in the thalamus, where healthy controls exhibited higher activity levels compared to subjects with schizophrenia. These findings highlight the model’s potential for differentiating between clinical populations.Conclusion:The proposed spatiotemporal dense prediction model offers an effective approach for generating dynamic brain maps by capturing significant spatiotemporal variations in brain activity. Leveraging weak supervision through ICA components enables the model to learn dynamic patterns without direct ground-truth data, making it a robust and efficient tool for brain mapping.Significance:This work presents an important new approach for dynamic brain mapping, potentially opening up new opportunities for studying brain dynamics within specific networks. By framing the problem as a spatiotemporal dense prediction task in computer vision, we leverage the spatiotemporal ViT architecture combined with weakly supervised learning techniques to efficiently and effectively estimate these maps.

Major depressive disorder (MDD) is a common and intractable mood disorder. Electroconvulsive therapy (ECT) is a common means of brain electrical stimulation for the treatment of MDD, but the neurobiological mechanism of its clinical symptom relief effect is still to be explored. This study aims to explore how ECT plays a role in depression remissions by investigating the changes of static and dynamic brain network characteristics in MDD patients before and after ECT. Resting-state functional magnetic resonance imaging (fMRI) scans were obtained from nine MDD patients twice before and after a full course of ECT, all of whom responded to ECT as defined by at least a 50% reduction from baseline Hamilton Depression Scale (HAMD) scores. Both static and dynamic characteristics of the functional brain network were compared between the pre- and post-ECT scans for all participants, and the correlations between changes in clinical symptoms and altered network metrics were also investigated. The clustering coefficient and local efficiency in static brain networks were increased significantly, while the global flexibility of dynamic brain networks was decreased significantly after ECT. Several regions of interest (ROIs) that changed significantly at the local level were also identified, which involved regions of the cerebellum, hippocampus as well as frontal and temporal cortices. Although not significant, the decrease of HAMD scores were associated with trends of changed network metrics after ECT. Our results suggest that ECT may alleviate the depressive symptoms of MDD by decreasing the randomness of the brain network as reflected by changes in both static and dynamic network properties and that the temporal gyrus, frontal gyrus, hippocampus, and cerebellar regions may play key roles in such mechanisms. These findings have important implications for our understandings of ECT and depression. However, this study is limited by a relatively small sample size and the results should be confirmed in larger samples.

Autism spectrum disorder (ASD) is a collection of neurodevelopmental disorders whose pathobiology remains elusive. This study aimed to investigate the possible neural mechanisms underlying ASD using a dynamic brain network model and a relatively large-sample, multi-site dataset. Resting-state functional magnetic resonance imaging data were acquired from 208 ASD patients and 227 typical development (TD) controls, who were drawn from the multi-site Autism Brain Imaging Data Exchange (ABIDE) database. Brain network flexibilities were estimated and compared between the ASD and TD groups at both global and local levels, after adjusting for sex, age, head motion, and site effects. The results revealed significantly increased brain network flexibilities (indicating a decreased stability) at the global level, as well as at the local level within the default mode and sensorimotor areas in ASD patients than TD participants. Additionally, significant ASD-related decreases in flexibilities were also observed in several occipital regions at the nodal level. Most of these changes were significantly correlated with the Autism Diagnostic Observation Schedule (ADOS) total score in the entire sample. These results suggested that ASD is characterized by significant changes in temporal stabilities of the functional brain network, which can further strengthen our understanding of the pathobiology of ASD.

In recent years, the field of network science has enabled researchers to represent the highly complex interactions in the brain in an approachable yet quantitative manner. One exciting finding since the advent of brain network research was that the brain network can withstand extensive damage, even to highly connected regions. However, these highly connected nodes may not be the most critical regions of the brain network, and it is unclear how the network dynamics are impacted by removal of these key nodes. This work seeks to further investigate the resilience of the human functional brain network. Network attack experiments were conducted on voxel-wise functional brain networks and region-of-interest (ROI) networks of 5 healthy volunteers. Networks were attacked at key nodes using several criteria for assessing node importance, and the impact on network structure and dynamics was evaluated. The findings presented here echo previous findings that the functional human brain network is highly resilient to targeted attacks, both in terms of network structure and dynamics.

Large-Scale Brain Network Dynamics Provide a Measure of Psychosis and Anxiety in 22q11.2 Deletion Syndrome

The multilayer dynamic network model has been proposed as an effective method to understand the brain function. In particular, derived from the definition of clustering coefficient in static networks, the temporal clustering coefficient provides a direct measure of the topological stability of dynamic brain networks and shows potential in predicting altered brain functions. However, test-retest reliability and demographic-related effects on this measure remain to be evaluated. Using a data set from the Human Connectome Project (157 male and 180 female healthy adults; 22-37 years old), the present study investigated: (1) the test-retest reliability of temporal clustering coefficient across four repeated resting-state functional magnetic resonance imaging scans as measured by intraclass correlation coefficient (ICC); and (2) sex- and age-related effects on temporal clustering coefficient. The results showed that (1) the temporal clustering coefficient had overall moderate test-retest reliability (ICC > 0.40 over a wide range of densities) at both global and subnetwork levels, (2) female subjects showed significantly higher temporal clustering coefficient than males at both global and subnetwork levels, particularly within the default-mode and subcortical regions, and (3) temporal clustering coefficient of the subcortical subnetwork was positively correlated with age in young adults. The results of sex effects were robustly replicated in an independent REST-meta-MDD data set, while the results of age effects were not. Our findings suggest that the temporal clustering coefficient is a relatively reliable and reproducible approach for identifying individual differences in brain function, and provide evidence for demographically related effects on the human brain dynamic connectomes.

Mechanisms of deep brain stimulation (DBS) on cortical networks were explored mainly by fMRI. Advanced analysis of high-density EEG is a source of additional information and may provide clinically useful biomarkers. The presented study evaluates EEG microstates in Parkinson’s disease and the effect of DBS of the subthalamic nucleus (STN). The association between revealed spatiotemporal dynamics of brain networks and changes in oscillatory activity and clinical examination were assessed. Thirty-seven patients with Parkinson’s disease treated by STN-DBS underwent two sessions (OFF and ON stimulation conditions) of resting-state EEG. EEG microstates were analyzed in patient recordings and in a matched healthy control dataset. Microstate parameters were then compared across groups and were correlated with clinical and neuropsychological scores. Of the five revealed microstates, two differed between Parkinson’s disease patients and healthy controls. Another microstate differed between ON and OFF stimulation conditions in the patient group and restored parameters in the ON stimulation state toward to healthy values. The mean beta power of that microstate was the highest in patients during the OFF stimulation condition and the lowest in healthy controls; sources were localized mainly in the supplementary motor area. Changes in microstate parameters correlated with UPDRS and neuropsychological scores. Disease specific alterations in the spatiotemporal dynamics of large-scale brain networks can be described by EEG microstates. The approach can reveal changes reflecting the effect of DBS on PD motor symptoms as well as changes probably related to non-motor symptoms not influenced by DBS.

Introduction: It is unknown the alterations in the dynamic networks of the brain and the underlying molecular pathological mechanism of Alzheimer's disease (AD) spectrum. Here, we aim to explore the association between alterations in the dynamic brain networks' trajectory and cognitive decline in the AD spectrum. Methods: One hundred sixty subjects were recruited from the ADNI database, including 49 early mild cognitive impairment, 28 late mild cognitive impairment, 24 AD patients, and 59 cognitively normal. All participants completed the resting-state functional magnetic resonance imaging scan and neuropsychological tests. We integrated a new method combining large-scale network analysis and canonical correlation analysis to explore the dynamic spatiotemporal patterns within- and between resting-state networks (RSNs) and their significance in the AD spectrum. Results: All RSNs represented an increase in connectivity within networks by enhancing inner cohesive ability, while 7 out of 10 RSNs were characterized by a decrease in connectivity between networks, which indicated a weakened connector among networks from the early stage to dementia. This dichotomous mode presenting large-scale dynamic network abnormality was significantly correlated with the levels of molecular biomarkers of AD, and cognitive performance, as well as with the accumulating effects of 10 identified AD-related genetic risk factors. Discussion: These findings deepen our understanding of the associated mechanism underlying large-scale network disruption, linking known molecular biomarkers and phenotypic variations in the AD spectrum.

Schizophrenia is increasingly recognized as a disorder of distributed neural dynamics, but the molecular and genetic contributions are poorly understood. Recent work highlights a role for altered N-methyl-d-aspartate (NMDA) receptor signaling and related impairments in the excitation-inhibitory balance and synchrony of large-scale neural networks. Here, we combined a pharmacological intervention with novel techniques from dynamic network neuroscience applied to functional magnetic resonance imaging (fMRI) to identify alterations in the dynamic reconfiguration of brain networks related to schizophrenia genetic risk and NMDA receptor hypofunction. We quantified "network flexibility," a measure of the dynamic reconfiguration of the community structure of time-variant brain networks during working memory performance. Comparing 28 patients with schizophrenia, 37 unaffected first-degree relatives, and 139 healthy controls, we detected significant differences in network flexibility [F(2,196) = 6.541, P = 0.002] in a pattern consistent with the assumed genetic risk load of the groups (highest for patients, intermediate for relatives, and lowest for controls). In an observer-blinded, placebo-controlled, randomized, cross-over pharmacological challenge study in 37 healthy controls, we further detected a significant increase in network flexibility as a result of NMDA receptor antagonism with 120 mg dextromethorphan [F(1,34) = 5.291, P = 0.028]. Our results identify a potential dynamic network intermediate phenotype related to the genetic liability for schizophrenia that manifests as altered reconfiguration of brain networks during working memory. The phenotype appears to be influenced by NMDA receptor antagonism, consistent with a critical role for glutamate in the temporal coordination of neural networks and the pathophysiology of schizophrenia.