An Overview of Disease Prediction based on Graph Convolutional Neural Network

Cross-subject emotion recognition in brain-computer interface based on frequency band attention graph convolutional adversarial neural networks

Video-based human action recognition is one of the most important and challenging areas of research in the field of computer vision. Human action recognition has found many pragmatic applications in video surveillance, human-computer interaction, entertainment, autonomous driving, etc. Owing to the recent development of deep learning methods for human action recognition, the performance of action recognition has significantly enhanced for challenging datasets. Deep learning techniques are mainly used for recognizing actions in images and videos comprising of Euclidean data. A recent development in deep learning methods is the extension of these techniques to non-Euclidean data or graph data with many nodes and edges. Human body skeleton resembles a graph, therefore, the graph convolutional network (GCN) is applicable to the non-Euclidean body skeleton. In the past few years, GCN has emerged as an important tool for skeleton-based action recognition. Therefore, we conduct a survey using GCN methods for action recognition. Herein, we present a comprehensive overview of recent GCN techniques for action recognition, propose a taxonomy for the categorization of GCN techniques for action recognition, carry out a detailed study of the benchmark datasets, enlist relevant resources and open-source codes, and finally provide an outline for future research directions and trends. To the best of authors' knowledge, this is the first survey for action recognition using GCN techniques.

Exploring the optimization of communication strategies for animation films in the context of cross-cultural communication, this research integrates the Internet of Things (IoT) and convolutional networks. The research constructs a collaborative filtering (CF) movie recommendation model based on a graph convolutional neural network (GCN) and investigates its application in cross-cultural communication. The fusion of IoT and convolutional networks in movie communication is also analyzed, and the effectiveness of the proposed GCN-CF model is validated through comparative experiments. The results indicate that, compared to other models, the GCN-CF model achieves the lowest Root Mean Square Error (RMSE) on the MovieLens 100 K and MovieLens 1 M datasets, with values of 0.8762 and 0.8275, respectively. Compared to traditional models, the GCN-CF model exhibits significantly superior performance in terms of RMSE, with reductions ranging from 0.6 to 5.2%, highlighting its heightened detection accuracy and overall performance. Moreover, the performance of the GCN-CF model is enhanced after introducing attention mechanisms and auxiliary information on both datasets, showing an improvement of 0.4% compared to the scenario without these additions. This data demonstrates the effectiveness of attention mechanisms and auxiliary information. Finally, the research presents an animation film communication strategy based on IoT and convolutional networks, offering novel insights for film production and communication, along with positive implications for cultural exchange and the advancement of the global media industry.

Automatic building extraction from optical imagery remains a challenge due to, for example, the complexity of building shapes. Semantic segmentation is an efficient approach for this task. The latest development in deep convolutional neural networks (DCNNs) has made accurate pixel-level classification tasks possible. Yet one central issue remains: the precise delineation of boundaries. Deep architectures generally fail to produce fine-grained segmentation with accurate boundaries due to their progressive down-sampling. Hence, we introduce a generic framework to overcome the issue, integrating the graph convolutional network (GCN) and deep structured feature embedding (DSFE) into an end-to-end workflow. Furthermore, instead of using a classic graph convolutional neural network, we propose a gated graph convolutional network, which enables the refinement of weak and coarse semantic predictions to generate sharp borders and fine-grained pixel-level classification. Taking the semantic segmentation of building footprints as a practical example, we compared different feature embedding architectures and graph neural networks. Our proposed framework with the new GCN architecture outperforms state-of-the-art approaches. Although our main task in this work is building footprint extraction, the proposed method can be generally applied to other binary or multi-label segmentation tasks.

Vehicle trajectory prediction is an important research basis for the decision making and path planning of the intelligent and connected vehicle. In the connected vehicle environment, vehicles share information and drive cooperatively, and the intelligent and connected vehicles are able to obtain more accurate and rich perception information, which provides a data basis for accurate prediction of vehicle trajectories. However, attaining accurate and effective vehicle trajectory predictions poses technical challenges due to insufficient extraction of vehicular spatial–temporal interaction features. In this paper, we propose a vehicle trajectory prediction model based on graph convolutional neural network (GCN) in a connected vehicle environment. Specifically, using the driving scene information obtained by the intelligent and connected vehicle, the spatial graph and temporal graph are constructed based on the spatial interaction coefficient (SIC) and self-attention mechanism, respectively. Then, the graph data are entered into the interaction extraction module, and the spatial interaction features and temporal interaction features are extracted separately using the graph convolutional networks, which are fused to obtain the spatial–temporal interaction information. Finally, the interaction features are learned based on the convolutional neural networks to output the future trajectory information of all vehicles in the scene by one forward operation rather than a step-by-step process. The ablation experiment results show that the method proposed in this study to model the spatiotemporal interaction among vehicles based on SIC and self-attention mechanism reduces the prediction error by 5% and 12%, respectively. The results from the model comparison experiment show that the proposed method engenders an 8% improvement in prediction accuracy over the state-of-the-art solution, providing technical and theoretical support for trajectory prediction research of intelligent and connected vehicles.

Graph convolutional neural networks have difficulties in model training takes a lot of time and lack of universality in meta-path design when processing knowledge graphs. To solve these issues, this paper proposes an efficient recommendation algorithm integrating knowledge graphs with graph convolutional networks(EKG-GCN). The algorithm is mainly based on the graph convolution algorithm. Firstly, the relationship between users and entities is standardized and scored, then a new neighborhood aggregation method is proposed. Some nodes in the knowledge graph are set as central nodes. A distance-influence function is set up according to the distance from other nodes to the central node, and the feature extraction of information in the knowledge graph is completed according to the distance-influence function. Finally, the knowledge graph features are used as an auxiliary to complete the recommendation task. In the experiment, three data sets were selected to compare with other advanced models, and it was found that the model is in an advantageous position in terms of training time and recommendation effect, and has a certain degree of universality.

The objective of extracting relations between document components lies in identifying the Within a single document, the focus often lies on understanding the connections between different entities. This type of analysis goes beyond individual sentences, as it demands an understanding of how information from multiple sentences interacts to form these connections. Over recent years, the importance of exploring relationships involving several entities simultaneously has grown significantly. To advance the field of studying such connections across entire documents, a novel collection of data points, known as DocRED, has been introduced. Currently, the standard approach for this task involves using BiLSTM networks to process the entire document as a whole. However, this method struggles to effectively capture the intricate relationships that exist among various entities. To overcome this limitation, a new model designed for document-level relationship identification has been developed, which leverages Graph Convolutional Networks (GCN). GCNs are particularly useful here because they can gather information from surrounding entities, allowing for a more detailed modeling of their interactions. The proposed approach starts by identifying coreferential links to gather features that represent the relationships between pairs of entities. These features are then analyzed using GCN to construct a graph structure that represents the entire document, ultimately revealing the complex interactions between different entities. Testing this model on the large-scale DocRED dataset from Tsinghua University has demonstrated its strong performance in this challenging task.

Predicting DNA sequence splice site based on graph convolutional network and DNA graph construction

Drainage network pattern recognition is a significant task with wide applications in geographic information mining, map cartography, water resources management, and urban planning. Accurate identification of spatial patterns in river networks can help us understand geographic phenomena, optimize map cartographic quality, assess water resource potential, and provide a scientific basis for urban development planning. However, river network pattern recognition still faces challenges due to the complexity and diversity of river networks. To address this issue, this study proposes a river network pattern recognition method based on graph convolutional networks (GCNs), aiming to achieve accurate classification of different river network patterns. We utilize binary trees to construct a hierarchical tree structure based on river reaches and progressively determine the tree hierarchy by identifying the upstream and downstream relationships among river reaches. Based on this representation, input features for the graph convolutional model are extracted from both spatial and geometric perspectives. The effectiveness of the proposed method is validated through classification experiments on four types of vector river network data (dendritic, fan-shaped, trellis, and fan-shaped). The experimental results demonstrate that the proposed method can effectively classify vector river networks, providing strong support for research and applications in related fields.

Baseline-free assisted lamb wave-based damage detection in CFRP composites using graph convolutional networks and Transformer models

This study addresses limitations in EEG-based stress detection research by developing a novel approach to differentiate multiple mental states in different stress baseline population samples. Utilizing EEG signals, graph convolutional neural networks (GCNs), and binaural beats stimulation (BBs), the research investigates stress detection and reduction in two population sample groups with distinct baselines (group 1: low daily baseline, and group 2: stressed daily baseline). The experiment comprises four phases: rest state, control alertness, stress induction, and stress mitigation. Mental states were assessed using behavioral data: reaction time to stimuli (RT) and target detection accuracy, subjective reports: Perceived Stress Scale scores (PSS-10), biochemical indicators: salivary cortisol levels, and neurophysiological measure: EEG effective connectivity via Partial Directed Coherence (PDC). BBs significantly improved target detection accuracy by 31.6% and 22.8% for low and high-stress groups, respectively. PDC connectivity showed a shift to the temporal region during mitigation, indicating a return to a more balanced state. GCN classification achieved accuracies of <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$76.43~\pm ~9.01$ </tex-math></inline-formula>% and <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$76.32~\pm ~7.79$ </tex-math></inline-formula>% for each group, and <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$76.37~\pm ~8.40$ </tex-math></inline-formula>% for a common baseline. While 16-Hz BBs enhanced focusing abilities they did not significantly reduce subjective stress scores. This study highlights the complex relationship between cognitive performance, perceived stress, and neurophysiological measures, emphasizing the need for multifaceted stress research and management approaches.

As a current research hotspot, graph convolution networks (GCNs) have provided new opportunities for tree species classification in multi-source remote sensing images. To solve the challenge of limited label information, a new tree species classification model was proposed by using the semi-supervised graph convolution fusion method for hyperspectral images (HSIs) and multispectral images (MSIs). In the model, the graph-based attribute features and pixel-based features are fused to deepen the correlation of multi-source images to improve accuracy. Firstly, the model employs the canonical correlation analysis (CCA) method to maximize the correlation of multi-source images, which explores the relationship between information from various sources further and offers more valuable insights. Secondly, convolution calculations were made to extract features and then map graph node fusion, which not only reduces redundancy features but also enhances compelling features. Finally, the relationship between representative descriptors is captured through the use of hyperedge convolution in the training process, and the dominant features on the graph are fully mined. The tree species are classified through two fusion feature operations, leading to improved classification performance compared to state-of-the-art methods. The fusion strategy can produce a complete classification map of the study areas.

Aiming at the problems of diversification, complexity and islanding of power operation and inspection data and the high dependence of operation and inspection operations on expert experience and normative information, the key technology research of intelligent judgment of defect types of power operation inspection equipment is carried out. For the field of power operation and inspection, the defect text classification algorithm based on graph convolutional neural network is proposed. And the practical tests in a large defect text network diagram built by main transformer defect reports are performed. And the proposed model achieves better classification results than 7 benchmark models in the defect text classification task. Specifically, the Accuracy, Weighed-Precision, and Weighed-F1 indicators reach 73.39, 72.42, and 72.21 respectively, which improves the model’s ability to identify defect types to a greater extent and plays an important role in improving the intelligence and digitalization of power operation and inspection work.

Contemporary deep learning approaches exhibit state-of-the-art performance in various areas. In healthcare, the application of deep learning remains limited since deep learning methods are often considered as non-interpretable black-box models. However, the Machine Learning (ML) community made recent elaborations to develop the methods of eXplainable Artificial Intelligence (XAI). The explanation methods explain single decisions of an ML model when a single data point is fed into the model’s input. In a clinical setup, a data point can represent a single patient. Data point-specific explanations could possibly assist the need in personalized precision medicine decisions via explaining patient-specific predictions. Convolutional Neural Networks (CNNs) as deep learning methods have been already applied to classify transformed into images gene expression profiles of patients. Gene expression data can be structured by a prior knowledge molecular network (encoded as a graph) representing connections between genes. Each vertex of a molecular network is assigned a gene expression value as an attribute. The set of the attributes creates a graph signal representing a patient. Emerging field of geometric deep learning deals with methods applicable to graph structured data and extends CNNs as Graph Convolutional Neural Networks (GCNNs) classifying graph signals. Layer-wise Relevance Propagation (LRP) is a method to explain decisions of CNNs classifying image data. I extended the LRP method to make it available for GCNNs. Graph Layer-wise Relevance Propagation (GLRP) is presented as a new method to explain single decisions made by a GCNN model. In this thesis, I present a novel methodology generating patient-specific molecular subnetworks as explanations for classification decisions of an ML approach utilizing prior knowledge of molecular networks. GCNN serves as a ML approach, and its decisions are explained by developed GLRP. A sanity check of the developed GLRP method was demonstrated on a hand-written digits dataset. The biological validation was performed by applying the developed methodology to gene expression data from Human Umbilical Vein Endothelial Cells (HUVEC) treated or not treated with tumor necrosis factor alpha. To show the utility of introduced methodology in the scopes of precision medicine, it was applied to a large breast cancer dataset. The generated patient-specific subnetworks largely agree with clinical knowledge and could assist precision medicine approaches by identifying common as well as novel, and potentially druggable, drivers of tumor progression. Apart from generating patient-specific subnetworks, the developed methodology can be used as a general feature selection approach. The outcome of a feature selection approach is a subset of important for classification genes corresponding to a whole dataset. It is essential to sustain stability of selected feature subsets across different datasets with the same clinical endpoint since the selected genes are possible candidates for prognostic biomarkers. I analysed the stability of feature selection performed by GCNN+LRP. I have implemented a graph convolutional layer of GCNN as a Keras layer so that the SHapley Additive exPlanations (SHAP) method could be also applied to a Keras version of a GCNN model. The stability of feature selection performed by GCNN+LRP was compared to the stability of GCNN+SHAP and other ML-based feature selection approaches. The GCNN+LRP approach shows the highest stability. GCNN+LRP subnetworks were compared to GCNN+SHAP subnetworks in terms of connectivity and permutation feature importance. While GCNN+SHAP subnetworks demonstrate higher permutation importance than GCNN+LRP subnetworks, a GCNN+LRP subnetwork of an individual patient is on average substantially more connected and, therefore more interpretable in the context of prior knowledge than a GCNN+SHAP subnetwork which consists mainly of single vertices.

miRNAs are important regulators for many crucial biological processes. Many recent studies have shown that miRNAs are closely related to various human diseases and can be potential biomarkers or therapeutic targets for some diseases, such as cancers. Therefore, accurately predicting miRNA-disease associations is of great importance for understanding and curing diseases. However, how to efficiently utilize the characteristics of miRNAs and diseases and the information on known miRNA-disease associations for prediction is still not fully explored. In this study, we propose a novel computational method for predicting miRNA-disease associations. The proposed method combines the graph convolutional network and the hypergraph convolutional network. The graph convolutional network is utilized to extract the information from miRNA-similarity data as well as disease-similarity data. Based on the representations of miRNAs and diseases learned by the graph convolutional network, we further use the hypergraph convolutional network to capture the complex high-order interactions in the known miRNA-disease associations. We conduct comprehensive experiments with different datasets and predictive tasks. The results show that the proposed method consistently outperforms several other state-of-the-art methods. We also discuss the influence of hyper-parameters and model structures on the performance of our method. Some case studies also demonstrate that the predictive results of the method can be verified by independent experiments.