Brain tumour segmentation from MRI using superpixels based spectral clustering

Segmentation and classification of brain tumor are time-consuming and challenging chore in clinical image processing. Magnetic Resonance Imaging (MRI) offers more information related to human soft tissues that assists in diagnosing brain tumor. Precise segmentation of the MRI images is vital to diagnose brain tumor by means of computer-aided medical tools. Afterwards suitable segmentation of MRI brain tumor images, tumor classification is performed that is a hard chore owing to complications. Therefore, Gannet Aquila Optimization Algorithm_deep maxout network (GAOA_DMN) and GAOA_K-Net+speech enhancement generative adversarial network (GAOA_K-Net+Segan) is presented for classification and segmentation of brain tumor utilizing MRI images. Here, pre-processing phase performs noise removal from input image utilizing the Laplacian filter and also the region of interest (ROI) extraction is also carried out. Then, segmentation of brain tumor is conducted by K-Net+Segan, which is combined by Motyka similarity. However, K-Net+Segan for segmentation is trained by GAOA that is an amalgamation of Gannet Optimization Algorithm (GOA) and Aquila Optimizer (AO). From segmented image, features are extracted for performing classification phase. At last, brain tumor classification is conducted by DMN, which is tuned by GAOA and thus, output is obtained. Furthermore, GAOA_K-Net+Segan obtained better outcomes in terms of segmentation accuracy whereas devised GAOA_DMN achieved maximum accuracy, true negative rate (TNR) and true positive rate (TPR) of 92.7%, 94.5% and 91.5%.

Brain tumor detection and segmentation from Magnetic Resonance Imaging (MRI) images is being one of the emerging fields in the biomedicine. A formidable undertaking in brain tumor surgery, medical care, treatment programme and quantitative assessment of MRI images is to precisely diagnose its location and extent. Recently, the convolutional neural network (CNN) based detection and segmentation method on brain tumor MRI images is being one of the emerging fields in the medical imaging as an automatic clinic treatment and evaluation solution. In this article, we put forward a brand new quadruplet loss in CNN framework, which achieves higher accuracy in brain tumor detection and segmentation than other pairwise loss and triplet loss methods. By applying the proposed quadruplet loss to the original L2Net CNN architecture leads to a more compact descriptor named QuadrupletNet. From our experiments, QuadrupletNet shows higher performance than other state-of-the-art loss functions e.g., the Triplet loss, as indicated in experiments on Multimodal Brain Tumor Image Segmentation (BRATS 2018) datasets, and on our own collected MRI brain tumor datasets (named MBTD).

Brain tumor significantly impacts the quality of life and changes everything for a patient and their loved ones. Diagnosing a brain tumor usually begins with magnetic resonance imaging (MRI). The manual brain tumor diagnosis from the MRO images always requires an expert radiologist. However, this process is time-consuming and costly. Therefore, a computerized technique is required for brain tumor detection in MRI images. Using the MRI, a novel mechanism of the three-dimensional (3D) Kronecker convolution feature pyramid (KCFP) is used to segment brain tumors, resolving the pixel loss and weak processing of multi-scale lesions. A single dilation rate was replaced with the 3D Kronecker convolution, while local feature learning was performed using the 3D Feature Selection (3DFSC). A 3D KCFP was added at the end of 3DFSC to resolve weak processing of multi-scale lesions, yielding efficient segmentation of brain tumors of different sizes. A 3D connected component analysis with a global threshold was used as a post-processing technique. The standard Multimodal Brain Tumor Segmentation 2020 dataset was used for model validation. Our 3D KCFP model performed exceptionally well compared to other benchmark schemes with a dice similarity coefficient of 0.90, 0.80, and 0.84 for the whole tumor, enhancing tumor, and tumor core, respectively. Overall, the proposed model was efficient in brain tumor segmentation, which may facilitate medical practitioners for an appropriate diagnosis for future treatment planning.

Intracranial tumors are commonly known as brain tumors, which can be life-threatening in severe cases. Magnetic resonance imaging (MRI) is widely used in diagnosing brain tumors because of its harmless to the human body and high image resolution. Due to the heterogeneity of brain tumor height, MRI imaging is exceptionally irregular. How to accurately and quickly segment brain tumor MRI images is still one of the hottest topics in the medical image analysis community. However, according to the brain tumor segmentation algorithms, we could find now, most segmentation algorithms still stay in two-dimensional (2D) image segmentation, which could not obtain the spatial dependence between features effectively. In this study, we propose a brain tumor automatic segmentation method called scSE-NL V-Net. We try to use three-dimensional (3D) data as the model input and process the data by 3D convolution to get some relevance between dimensions. Meanwhile, we adopt non-local block as the self-attention block, which can reduce inherent image noise interference and make up for the lack of spatial dependence due to convolution. To improve the accuracy of convolutional neural network (CNN) image recognition, we add the “Spatial and Channel Squeeze-and-Excitation” Network (scSE-Net) to V-Net. The dataset used in this paper is from the brain tumor segmentation challenge 2020 database. In the test of the official BraTS2020 verification set, the Dice similarity coefficient is 0.65, 0.82, and 0.76 for the enhanced tumor (ET), whole tumor (WT), and tumor core (TC), respectively. Thereby, our model can make an auxiliary effect on the diagnosis of brain tumors established.

Accurate brain tumor segmentation from magnetic resonance imaging (MRI) images is important for proper medication. Manual segmentation may be erroneous and a computer-aided method is recommended for precise segmentation which is also challenging due to the contrast level of MRI images. This research work proposes to utilize a parametric active contour model (PACM)-based deformable snake model to segment brain tumors from MRI images. Conventional PACM model prerequisites some initial points for its initialization which may have a time-consuming issue. The main contribution of this paper is to modify the PACM algorithm, so that it can predict its initial points around the region of interest (ROI) from the given minimum (at least three) initial points. This proposed method aids PACM to find the initial contour points automatically to start the deformable mechanism. Furthermore, different parameters of the PACM algorithm are optimized for the segmentation by check and trial method. The proposed method is applied to different shapes of brain tumors inside the MRI images and found satisfactory segmentation outcomes. Furthermore, the proposed algorithm reports the number of total pixels inside the segmented area. Therefore, we hope that this proposal will help to find the area of critically shaped brain tumor in an MRI image.

Glioblastoma is an aggressive type of cancer that can develop in the brain or spinal cord. Magnetic Resonance Imaging (MRI) is key to diagnosing and tracking brain tumors in clinical settings. Brain tumor segmentation in MRI is required for disease diagnosis, surgical planning, and prognosis. As these tumors are heterogeneous in shape and appearance, their segmentation becomes a challenging task. The performance of automated medical image segmentation has considerably improved because of recent advances in deep learning. Introducing context encoding with deep CNN models has shown promise for semantic segmentation of brain tumors. In this work, we use a 3D UNet-Context Encoding (UNCE) deep learning network for improved brain tumor segmentation. Further, we introduce epistemic and aleatoric Uncertainty Quantification (UQ) using Monte Carlo Dropout (MCDO) and Test Time Augmentation (TTA) with the UNCE deep learning model to ascertain confidence in tumor segmentation performance. We build our model using the training MRI image sets of RSNA-ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2021. We evaluate the model performance using the validation and test images from the BraTS challenge dataset. Online evaluation of validation data shows dice score coefficients (DSC) of 0.7787, 0.8499, and 0.9159 for enhancing tumor (ET), tumor core (TC), and whole tumor (WT), respectively. The dice score coefficients of the test datasets are 0.6684 for ET, 0.7056 for TC, and 0.7551 for WT, respectively.

A Validation Framework for Brain Tumor Segmentation

Accurately separating healthy tissue from tumorous regions is crucial for effective diagnosis and treatment planning based on magnetic resonance imaging (MRI) data. Current manual detection methods rely heavily on human expertise, so MRI-based segmentation is essential to improving diagnostic accuracy and treatment outcomes. The purpose of this paper is to compare the performance of detecting brain tumors from MRI images through segmentation using an unmodified and modified U-Net architecture from deep neural network (DNN) that has been modified by adding batch normalization and dropout on the encoder layer with and without the freeze layer. The study utilizes a public 2D brain tumor dataset containing 3064 T1-weighted contrast-enhanced images of meningioma, glioma, and pituitary tumors. Model performance was evaluated using intersection over union (IoU) and standard metrics such as precision, recall, f1-score, and accuracy across training, validation, and testing stages. Statistical analysis, including ANOVA and Duncan's multiple range test, was conducted to determine the significance of performance differences across the architectures. Results indicate that while the modified architectures show improved stability and convergence, the freeze layer model demonstrated superior IoU and efficiency, making it a promising approach for more accurate and efficient brain tumor segmentation. The comparison of the three methods revealed that the modified U-Net architecture with a freeze layer significantly reduced training time by 81.72% compared to the unmodified U-Net while maintaining similar performance across validation and testing stages. All three methods showed comparable accuracy and consistency, with no significant differences in performance during validation and testing.

In this paper, we look at how to design and build a system to find tumors using 2 Convolutional Neural Network (CNN) models. With the help of digital image processing and deep Learning, we can make a system that automatically diagnoses and finds different diseases and abnormalities. The tumor detection system may include image enhancement, segmentation, data enhancement, feature extraction, and classification. These options are set up so that the CNN model can give the best results. During the training phase, the learning rate is used to change the weights and bias. The learning rate also changes the weights. One Epoch is when all of the training images are shown to the model. As the training data may be very large, the data in each epoch are split into batches. Every epoch has a training session and a test session. After each epoch, the weights are changed based on how fast the CNN is learning. This is done with the help of optimization algorithms. The suggested technique uses the anticipated mean intersection over union value to identify failure instances in addition to forecasting the mean intersection over union. This paper talks about how to separate brain tumors from magnetic resonance images of patients taken from "Brain web." Using basic ideas of digital image processing, magnetic resonance images are used to extract and find tumors using a hybrid method. In this paper, the proposed algorithm is applied with the help of MATLAB. In medical image processing, brain tumor segmentation is an important task. The goal of this paper is to look at different ways to divide brain tumors using magnetic resonance imaging. Recently, automatic segmentation using deep learning methods has become popular because these methods get the best results and are better at solving this problem than others. Deep learning methods can also be used to process and evaluate large amounts of magnetic resonance imaging image data quickly and objectively. A classification method based on a convolution neural network is also added to the proposed scheme to make it more accurate and cut down on the amount of time it takes to do the calculations. Also, the results of the classification are given as images of a tumor or a healthy brain. The training is 98.5% correct. In the same way, both the validation accuracy and validation loss are high.

Mutated Aquila Optimizer for assisting brain tumor segmentation

There is an emerging need for medical imaging data to provide patients with timely diagnosis. Magnetic resonance imaging (MRI) images based on brain tumor segmentation approaches possess greater importance in planning treatment. Though, mechanizing the process with different imaging conditions and accuracy is a major challenge due to variations in tumor structures. Hence, an efficient optimization-driven classifier, called BirCat optimization-based deep belief network (BirCat-based DBN)isdeveloped to detect brain tumors. The introduced BirCat is devised by incorporating birdswarm algorithm (BSA) into cat swarm optimization (CSO) algorithm and is employed in tuning the DBN classifier. Here, the first step is pre-processing, where noises, as well as artifacts in input image, are eliminated by means of ROI extraction and filtering method. Then, for segmentation, region growing algorithm is used in which the distance is calculated by the modified Bhattacharya measure. Afterward, each segment is adapted for mining the segment-based features and pixel-based features used for classification. Then, the feature vector is formed and given to the DBN classifier, which is tuned with the help of the introduced BirCat for brain tumor detection. The introduced technique effectively determines the regions with the tumor in the input MRI image. Finally, the change detection is evaluated by analyzing the post-operative MRI image and the segmented image by means of pixel mapping strategy with respect to SURF features. The pixel mapping is utilized to evaluate the percentage change in tumor pixels. The proposed BirCat surpassed other prevailing approaches by producing maximal values of specificity, accuracy, sensitivity, F1-score, and Dice score at 0.92, 0.927, 0.938, 0.909, and 0.937, correspondingly, for dataset 2.

Brain tumor is known as the most aggressive tumor among all other tumors, which leads to short life span of the patients. Therefore to improve the health of oncological patient, treatment planning is a critical stage. The most common method used worldwide is MRI (Magnetic resonance imaging) to understand the behaviour of the tumors. MRI takes huge amount of data to properly define the criticality of tumor. The time taken during Manual segmentation can be reduced by utilizing exact quantitative technique for the future clinical practices. This research is focused towards studying the different techniques used in past by various researchers. This work would summarize the benefits, limitations and future opportunity to detect brain tumor more precisely.

Enhanced performance of Dark-Nets for brain tumor classification and segmentation using colormap-based superpixel techniques

In this work, we propose a fully automatic brain tumor and edema segmentation technique in brain magnetic resonance (MR) images. Different brain tissues are characterized using the novel texture features such as piece-wise triangular prism surface area (PTPSA), multi-fractional Brownian motion (mBm) and Gabor-like textons, along with regular intensity and intensity difference features. Classical Random Forest (RF) classifier is used to formulate the segmentation task as classification of these features in multi-modal MRIs. The segmentation performance is compared with other state-of-art works using a publicly available dataset known as Brain Tumor Segmentation (BRATS) 2012 [1]. Quantitative evaluation is done using the online evaluation tool from Kitware/MIDAS website [2]. The results show that our segmentation performance is more consistent and, on the average, outperforms other state-of-the art works in both training and challenge cases in the BRATS competition.

In this paper, we propose an automated approach based on the geometric median shift algorithm over Riemannian manifolds, for the brain tumor detection and segmentation in magnetic resonance images (MRI). This approach is based on the geometric median, geodesic distance. We propose the median shift to overcome the limitation of mean which is not necessary a point in a set. The geodesic distance can describe data points distributed on a manifold, compared to the Euclidean distance, and produce efficient results for image analysis. Coupled with k-means algorithm, the proposed framework can cluster the brain image into tree regions (gray matter, white matter and cerebrospinal fluid) and abnormalities regions. We applied this approach to clustering the brain tissues and brain tumor segmentation, which is validated on a synthetic brain MRI. The obtained results using two datasets show the efficiency of the used algorithm validated qualitatively by the measurement of Dice Similarity Coefficient.