- Research Article
- 10.1089/gen.42.06.15
Biopharma Is Going Digital … Bit by Bit
- Jun 01, 2022
- Genetic Engineering & Biotechnology News
- Gareth John Macdonald
Biopharma Is Going Digital … Bit by Bit
Autonomy has been touted to be a major asset of Cyber-Physical Systems (CPS) and its components. By intertwining non-physical and physical processes they seamlessly integrate interdependent computational and physical components. In this contribution we take a closer look on structural constellations of CPS and their components that refer to autonomy. We also take into account development aspects and demonstrate encoding autonomy aspects into a behavior-centered representation scheme for digital twins. It features encapsulation on various layers of abstraction in the course of design and choreography for self-contained while networked operation of CPS as System-of-Systems. As digital twin models created in the course of CPS design activities can be executed automatically, the implementation and adaptation of CPS (components) is intertwined with design activities. Consequently, users can act as designers and experience CPS behavior through digital twin execution interactively. Critical elements, such as managing private data in healthcare, can be monitored and adapted to individual needs.
Biopharma Is Going Digital … Bit by Bit
Biopharma Is Going Digital … Bit by Bit
605 Computational pathology-based digital twins enable the discovery of predictive biomarkers for precision immuno-oncology
605 Figure 2 Kaplan Meier analysis of (A) the Ph III MYSTIC study patients (N=303+285) considered in this proof-of-concept work, and (B) vPhIII study Digital Twins (N=121+121) generated by matching...
Read moreLeveraging digital twins for advanced threat modeling in cyber-physical systems cybersecurity
Threat modeling is a critical proactive security technique for identifying threats and determining mitigations. However, traditional approaches often fall short for Industrial Control Systems (ICS), which automate operations in domains like manufacturing and energy and are a subset of Cyber-Physical Systems (CPS). CPS integrates computation, networking, and physical processes, with ICS requiring specialized cybersecurity approaches due to its operational and safety-critical nature. This study explores the use of digital twin technology as a promising cybersecurity tool for ICS, enabling testing and analysis without disrupting operations. By examining the capabilities of digital twins in analysis, simulation, and replication, the research evaluates their potential to enhance threat modeling across the CPS life-cycle. Insights from the European Cyber Security Organisation (ECSO) Technical Paper on Cybersecurity Scenarios and Digital Twins guide the exploration of their role in threat modeling. The study addresses four research questions: 1. What purposes do digital twins serve in cybersecurity? 2. What benefits do digital twins offer in cybersecurity? 3. How can digital twin technology be leveraged for threat modeling? 4. What advantages can the use of digital twins bring to threat modeling? Our findings reveal that digital twins enhance ICS threat modeling by enabling continuous, dynamic, and autonomous assessment, offering valuable insights for advancing cybersecurity strategies in ICS, CPS, and related domains.
Read moreModel-driven digital twin construction
Digital twins emerge in many disciplines to support engineering, monitoring, controlling, and optimizing cyber-physical systems, such as airplanes, cars, factories, medical devices, or ships. There is an increasing demand to create digital twins as representation of cyber-physical systems and their related models, data traces, aggregated data, and services. Despite a plethora of digital twin applications, there are very few systematic methods to facilitate the modeling of digital twins for a given cyber-physical system. Existing methods focus only on the construction of specific digital twin models and do not consider the integration of these models with the observed cyber-physical system. To mitigate this, we present a fully model-driven method to describe the software of the cyber-physical system, its digital twin information system, and their integration. The integration method relies on MontiArc models of the cyber-physical system's architecture and on UML/P class diagrams from which the digital twin information system is generated. We show the practical application and feasibility of our method on an IoT case study. Explicitly modeling the integration of digital twins and cyber-physical systems eliminates repetitive programming activities and can foster the systematic engineering of digital twins.
Read moreData-driven Fault Diagnosis for Cyber-Physical Systems
The concept of Industry 4.0 uses cyber-physical systems and the Internet of Things to create "smart factories" that enable automated and connected production. However, the complex and diverse nature of cyber-physical systems makes them vulnerable to physical threats, where any fault in their physical components can lead to serious consequences, from financial losses to human safety. To reduce the risk of such failures, it is essential to have techniques in place to monitor the condition of these physical components closely. In recent years, data-driven predictive maintenance methods have become common due to the growth in data and advancements in machine learning. This thesis focuses on fault diagnosis, a key part of predictive maintenance, which aims to detect and identify faults in physical components. Incorporating advanced techniques, including machine learning algorithms and sensor data analysis, enhanced fault diagnosis systems' accuracy and efficiency. However, several real-world barriers challenge the effectiveness of these techniques. This research is structured around three primary objectives. The first objective aims to establish an efficient fault diagnosis system that is highly sensitive to fault occurrences while being resilient to uncertainties such as variability in fault patterns and data imbalance. To address variability in fault patterns, we developed a multi-step approach integrating clustering techniques and an adaptive neuro-fuzzy inference system, which significantly improved diagnosis robustness even under noisy conditions. For imbalanced datasets, a two-step method was introduced, combining permutation entropy for fault detection and envelope analysis for fault isolation. This approach was enhanced by an automatic frequency band selection method leveraging wavelet transform and statistical criteria, resulting in high fault diagnosis accuracy and reliability, even with limited labeled faulty data. The second objective focuses on developing fault diagnosis systems that can maintain high performance despite domain shifts and limited training data in both source and target domains. To address the challenge of domain shifts, a transfer learning technique was introduced, and a systematic literature review was conducted. This study bridges a technical gap by providing a comprehensive taxonomy, state-of-the-art methods, and insights into the challenges of applying transfer learning to predictive maintenance. Additionally, a conceptual framework was proposed to explore scenarios for transferring diagnostic knowledge from different source domains to target domains with insufficient training datasets. In a subsequent study, a new diagnostic framework was developed using digital twins and partial transfer learning to address the lack of real training datasets in both source and target domains as well as label space inconsistencies between them. The framework includes a general approach for developing digital twins of real machines to generate synthetic diagnostic data as source domain data. Furthermore, by incorporating a deep learning network and a double-layer attention mechanism, a partial transfer learning diagnostic model was developed to transfer diagnostic knowledge from the digital twin to the real target domain despite label space inconsistencies. The proposed framework was validated through an industrial case study involving rolling bearings in rotating equipment. The third objective focuses on developing an efficient fault diagnosis system capable of maintaining reliability under unseen and evolving working conditions. To achieve this, a novel self-adaptive fault diagnosis system was proposed, incorporating the MAPE-K loop, a domain generalization network model, and digital twin technologies. This self-adaptive fault diagnosis system leverages the MAPE-K loop to adapt in real time to evolving working conditions. Digital twins were employed to continuously generate data aligned with the real system’s operational context, enabling accurate fault diagnosis in dynamic environments. The domain generalization network model enhances generalization to unseen target working conditions by addressing overfitting and feature loss through multi-domain data augmentation, adversarial learning, and domain discrepancy modules. Validation using multiple rotating machinery datasets demonstrated that the developed fault diagnosis system outperformed state-of-the-art methods across various scenarios. In summary, this dissertation proposes a comprehensive and practical approach to addressing variability in fault patterns, imbalance datasets, data scarcity, domain shifts, and unseen and evolving working conditions challenges in existing fault diagnosis systems.
Read moreA Digital Twin (DT) approach to Narrow-Band Internet of Things (NB-IoT) wireless communication optimization in an industrial scenario
A Digital Twin (DT) approach to Narrow-Band Internet of Things (NB-IoT) wireless communication optimization in an industrial scenario
Read moreRisk auditing for Digital Twins in cyber physical systems: A systematic review
Digital Twins are emerging as a transformative technology within Cyber-Physical Systems (CPS), offering enhanced optimization, predictive maintenance, and real-time monitoring. However, their integration also introduces significant security challenges. These include vulnerabilities such as data breaches, unauthorized access, and cyber-attacks that disrupt real-time data flow between their physical and digital components. The involvement of IoT devices, sensors, and complex networked environments expands the attack surface, making Digital Twins susceptible to threats like Distributed Denial-of-Service (DDoS) attacks, malware infiltration, and insider sabotage. Effective risk management and assessment are crucial in identifying vulnerabilities, evaluating risks, and implementing mitigation strategies. Securing Digital Twins ensures data integrity, system reliability, and the continued functionality of the physical assets they represent. This paper aims to classify the various security threats associated with Digital Twins and propose structured risk management approaches to enhance their security within CPS. By addressing these challenges, organizations can ensure the dependability and trustworthiness of Digital Twin implementations across industries such as manufacturing, healthcare, smart cities, and IoT ecosystems.
Read moreCyber-WISE: A Cyber-Physical Deep Wireless Indoor Positioning System and Digital Twin Approach.
In recent decades, there have been significant research efforts focusing on wireless indoor localization systems, with fingerprinting techniques based on received signal strength leading the way. The majority of the suggested approaches require challenging and laborious Wi-Fi site surveys to construct a radio map, which is then utilized to match radio signatures with particular locations. In this paper, a novel next-generation cyber-physical wireless indoor positioning system is presented that addresses the challenges of fingerprinting techniques associated with data collection. The proposed approach not only facilitates an interactive digital representation that fosters informed decision-making through a digital twin interface but also ensures adaptability to new scenarios, scalability, and suitability for large environments and evolving conditions during the process of constructing the radio map. Additionally, it reduces the labor cost and laborious data collection process while helping to increase the efficiency of fingerprint-based positioning methods through accurate ground-truth data collection. This is also convenient for working in remote environments to improve human safety in locations where human access is limited or hazardous and to address issues related to radio map obsolescence. The feasibility of the cyber-physical system design is successfully verified and evaluated with real-world experiments in which a ground robot is utilized to obtain a radio map autonomously in real-time in a challenging environment through an informed decision process. With the proposed setup, the results demonstrate the success of RSSI-based indoor positioning using deep learning models, including MLP, LSTM Model 1, and LSTM Model 2, achieving an average localization error of ≤2.16 m in individual areas. Specifically, LSTM Model 2 achieves an average localization error as low as 1.55 m and 1.97 m with 83.33% and 81.05% of the errors within 2 m for individual and combined areas, respectively. These outcomes demonstrate that the proposed cyber-physical wireless indoor positioning approach, which is based on the application of dynamic Wi-Fi RSS surveying through human feedback using autonomous mobile robots, effectively leverages the precision of deep learning models, resulting in localization performance comparable to the literature. Furthermore, they highlight its potential for suitability for deployment in real-world scenarios and practical applicability.
Read moreUnmanned aerial vehicle‐aided edge networks with ultra‐reliable low‐latency communications: A digital twin approach
A digital twin (DT) framework for Internet‐of‐thing (IoT) networks is proposed where unmanned aerial vehicles (UAVs) acting as flying mobile edge computing (MEC) servers support the task offloading on the fly. The considered DT model is very well suitable for industrial automation with the strict constraints of mission‐critical services' ultra‐reliable low‐latency communication (URLLC) links. To support low‐latency IoT devices, we formulate the end‐to‐end (e2e) latency minimisation problem of digital twin‐aided offloading UAV‐URLLC. Specifically, the minimised latency is obtained by jointly optimising both communication and computation parameters, namely power, offloading factors, and the processing rate of IoT devices and MEC‐UAV servers. Due to the highly non‐convex optimisation problem, we first consider the K‐means clustering algorithm to optimally deploy the on‐demand UAVs. Then, an alternative optimisation approach combined with appropriate inner approximations is effectively exploited to tackle this challenge. We demonstrate the effectiveness of the proposed DT framework through representative numerical results.
Read moreCyber-Physical Systems and Their Impact on Modern Engineering Management Practices
Cyber Physical Systems (CPS) are redefining modern engineering practices by bringing the computational systems together with physical processes, boosting efficiency, security, and sustainability in different industries. This research highlights the influence of CPS in different sectors: its power to facilitate realtime decision making, predictive maintenance, and cybersecurity issues. The context in which this study occurs is to the application of digital twin technology in CPS — which is physical systems’ simulation for performance optimization and downtime reduction. The research includes the analysis of the efficiency of cybersecurity measures applied in CPS environment, the identification of vulnerabilities, and the suggestions of solutions for the mitigation of a cyber threat. Digital twins and predictive maintenance appears to improve the system performance by 30%, reduces the downtime by 25% due to application. Moreover, the research addresses upcoming concerns of sustainable practices in CPS and emerging technologies such as Industry 4.0 that promote resource optimization and waste reduction. The results show that CPS can improve both the operational efficiency and the environmental sustainability by enabling a smarter resource management. This work advances our understanding of trends, challenges and future directions in CPS as a means to inform engineering management practices, which are enabled by CPS.
Read moreDigital Twin in Industry 4.0: Technologies, Applications and Challenges
The digital transformation that is on-going worldwide, and triggered by the Industry 4.0 initiative, has brought to the surface new concepts and emergent technologies. One of these new concepts is the Digital Twin, which recently started gaining momentum, and is related to creating a virtual copy of the physical system, providing a connection between the real and virtual systems to collect and analyze and simulate data in the virtual model to improve the performance of the real system. The benefits of using the digital twin approach is attracting significant attention and interest from research and industry communities in the last few years, and its importance will increase in the upcoming years. Having this in mind, this paper surveys and discusses the digital twin concept in the context of the 4th industrial revolution, particularly focusing the concept and functionalities, the associated technologies, the industrial applications and the research challenges. The applicability of the digital concept is illustrated by the virtualisation of an UR3 collaborative robot which used the V-REP simulation environment and the Modbus communication protocol.
Read moreCo-Simulating Physical Processes and Network Data for High-Fidelity Cyber-Security Experiments
Recently, Digital Twin-based solutions have been proposed as experimentation platforms to study the behaviour of Cyber-Physical Systems (CPS) under attack, and design appropriate detection and mitigation measures. Existing solutions focus on physical process, control logic, or network communication simulation. Unfortunately, none of the Digital Twin solutions currently available provide a realistic and holistic solution to represent all three aspects. In this work, we propose the Digital HydrAuLic SIMulator (DHALSIM), a Digital Twin for water distribution systems that simulates physical, control, and network processes. DHALSIM builds on the integration of the Water Network Tool for Resilience (WNTR) hydraulic simulator and MiniCPS—an industrial network emulator—which are run in a co-simulation environment. Thanks to this integration, DHALSIM is able to simulate the hydraulic processes characterizing a water distribution system as well as full stack emulation of well-known industrial control protocols. The Digital Twin is demonstrated on the benchmark case study of C-Town, where we carry out a number of cyber-attack experiments. To our knowledge, DHALSIM is the first Digital Twin that implements a well known physics simulator with a virtual industrial logic and network emulation environment for water systems. DHALSIM is open source and available to the research community.
Read moreThe Impact of AI Foundation models on the future of digital engineering for logistics and supply Chain
• The objectives of this study match the CIE content as it provides academcians and practioners with innovative and helpful information on advanced computing technology in the industry. • Foundation models are large-scale machine learning models that have been trained on large amounts of data to perform a variety of tasks. • FMs are used to support management and operations in supply chain and logistics management and operations. • The paper is based on research conducted by the authors with several Italian and European organizations under a grant from the European Union's Next GenerationUE initiative. • The paper concludes with a real-world industrial case study to further substantiate these claims. The organizational environment is subject to constant change, driven by rapid technological progress and the advent of Industry 5.0. This dynamic scenario compels authors and practitioners in the fields of logistics and supply chain management and operations (LSCM) to explore the transformative impact of foundation models (FMs) and artificial intelligence (AI) on these areas. The integration of AI FMs, coupled with digital twins (DT) and cyber-physical systems (CPS), will not only optimize current processes but also fundamentally reshape the future of digital engineering (DE) in LSCM. Understanding the opportunities and challenges with FMs is critical to the strategic positioning in an ever-evolving marketplace where Industry 5.0 technologies drive innovation and efficiency. Organizations can gain a competitive advantage by analyzing the opportunities and risks of integrating FMs into LSCM operations and leveraging their ability to improve decision making and enhance predictive analytics and real-time monitoring through DT and CPS. This paper serves as a comprehensive and informative guide for evaluating the transformative potential of FMs in redesigning LSCM operations in the context of Industry 5.0, highlighting critical applications, exploring potential benefits and challenges, and pointing to upcoming innovations such as AI-driven DT and smart cyber-physical systems that are revolutionizing supply chain (SC) processes. The detailed analysis based on the Supply Chain Operations Reference (SCOR) components shows that FM-based solutions, supported by AI and Industry 5.0 technologies, can significantly improve LSCM business processes. This paper presents an integrated functional framework and technical architecture for implementing FM in LSCM, emphasizing the role of DT and CPS in enabling smart, adaptive, and resilient SC. The paper concludes with an industrial case study that further substantiates these claims and shows the practical application of FM in a shipbuilding organization. The case study describes successful approaches to implementing and effectively utilizing AI and DT. It provides a practical, functional, and technical framework for applying the transformative impact of FMs on LSCM within the Industry 5.0 paradigm. This integration highlights the synergy between FM, AI, DT, and CPS and paves the way. It paves the way for a more innovative, sustainable, and competitive management of supply networks and their operations.
Read moreCyber-physical systems and digital twins for “cognitive building” in the construction industry
PurposeDespite the growing attention on the relevance of improved building management systems with cognition in recent years in the architecture, engineering, construction and operation (AECO) community, no review has been conducted to understand the human-environment interaction features of cyber-physical systems (CPS) and digital twins (DTs) in developing the concept of a cognitive building (CB). Thus, this paper aims to review existing studies on CPS and DTs for CB to propose a comprehensive system architecture that considers human-environment interactions.Design/methodology/approachScientometric analysis and content analysis were adopted for this study.FindingsThe scientometric analysis of 1,042 journal papers showed the major themes of CPS/DTs for CB, and these can be categorized into three key technologies to realize CB in the AECO community: CPS, DTs and cognitive computing (CC). Content analysis of 44 relevant publications in the built environment assisted in understanding and evidently confirming the claim of this study on the integration of CPS and DTs for CB in construction by also involving the CC. It is found and confirmed that CB can be realized with CPS and DTs along with the CC. A CB system architecture (CBSA) is proposed from the three key technologies considering the human-environment interactions in the loop. The study discovered the potential applications of the CBSA across the building lifecycle phases, including the design, construction and operations and maintenance, with the potential promise of endowing resilience, intelligence, greater efficiency and self-adaptiveness. Based on the findings of the review, four research directions are proposed: human-environment interactions, CB for sustainable building performance, CB concept for modular buildings and moving beyond CB.Originality/valueThis study stands out for comprehensively surveying the intellectual core and the landscape of the general body of knowledge on CPS/DTs for CB in the built environment. It makes a distinctive contribution to knowledge as it does not only propose CBSA by integrating CPS and DTs along with CC but also suggests some potential practical applications. These may require expert judgments and real case examples to enhance reproducibility and validation.
Read moreENIGMA: An explainable digital twin security solution for cyber–physical systems
Digital Twins (DTs), being the virtual replicas of their physical counterparts, share valuable knowledge of the underlying physical processes and act as data acquisition and dissemination sources to Cyber–Physical System (CPS). Moreover, without obstructing the ongoing operations, DTs also provide an assessment platform for evaluating the operational behavior and security of the CPS. Therefore, they become a potential source of data breaches and a broad attack surface for attackers to launch covert attacks. To detect and mitigate security loopholes in DTs, one of the potential solutions is to leverage a gamification approach that can assess the security level of DTs while providing security analysts with a controlled and supportive virtual training environment. Artificial Intelligence/Machine Learning (AI/ML)-based approaches can complement the idea of security orchestration and automation in the gamification approach. However, AI/ML-based DTs security solutions are generally constrained by the lack of transparency of AI operations, which results in less confidence in the decisions made by the AI models. To address the explainable security challenges of DTs, this article proposes a gamification approach called sEcuriNg dIgital twins through GaMification Approach (ENIGMA). While leveraging DTs as an offensive security platform, ENIGMA provides gaming scenarios to assess DTs’ security and train security analysts. The game players within ENIGMA are humans (the attacker team) and AI agents (the defender team). Furthermore, ENIGMA is supported by an eXplainable AI (XAI)-based DT security assessment model that explains the decisions made based on the SHAP values by the AI model on attack vectors for the defender team, i.e., the AI agent. The SHAP values illustrate the contribution of different features towards predicting the outcome of attack vectors. This explanation can help security analysts to take security measures based on reasoned and trustworthy decisions. Finally, experimental validation has been carried out to demonstrate the viability of ENIGMA.
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