Community detection in bipartite networks by multi label propagation algorithm

Many aspects from real life with bi-relational structure can be modeled as bipartite networks. This modeling allows the use of some standard solutions for prediction and/or recommendation of new relations between objects in such networks. In this work, we combine an existing bipartite local models method with approaches for link prediction from communities to address the link prediction problem in this type of networks. The motivation of this work stems from the importance of an application task, drug–target interaction prediction. Searching valid drug candidates for a given biological target is an essential part of modern drug development. We model the problem as link prediction in a bipartite multi-layer network, which helps to aggregate different sources of information into one single structure and as a result improves the quality of link prediction. We adapt existing community measures for link prediction to the case of bipartite multi-layer networks, propose alternative ways for exploiting communities, and show experimentally that our approach is competitive with the state-of-the-art. We also demonstrate the scalability of our approach and assess interpretability. Additional evaluations on data of a different origin than drug–target interactions demonstrate the genericness of the proposed approach.

Community detection has realistic meaning to the research of network structure. In this paper, we propose a community detection algorithm (BSSCD algorithm) by calculating the similarity of nodes and dividing the nodes with maximum similarity into the same community. In order to accurately calculate the similarity of nodes, we define a novel similarity calculation method which combines Salton index and the improved Logistic function by analyzing the structural characteristics of two types of nodes in bipartite networks and their effects on the density of community. BSSCD algorithm does not require prior knowledge about the number of communities and the result obtained with BSSCD algorithm is very stable. Experiments on real world network datasets show that the similarity calculation method can improve accuracy of similarity calculation and BSSCD algorithm is an efficient method for community detection in bipartite networks.

The community structure is a major feature of bipartite networks, which serve as a typical model for empirical networks consisting of two kinds of nodes. Over the past years, community detection has drawn a lot of attention. Numerous methods for community detection have been put forth. Nevertheless, some of them need a lot of time, which restricts their use in large networks. While several low-time complexity algorithms exist, their practical value in real-world applications is limited since they are typically non-deterministic. Typically, in bipartite networks, a unipartite projection of one part of the network is created, and then communities are detected inside that projection using methods for unipartite networks. Unipartite projections may yield incorrect or erroneous findings as they inevitably include a loss of information. In this paper, BiVoting, a two-mode and deterministic community detection method in bipartite networks, is proposed. This method is a consequence of bipartite modularity, which quantifies the strength of partitions and is based on how people vote in social elections. The proposed method’s performance was evaluated, and comparison with four common community detection methods in bipartite networks shows that for calculating the modularity score in large networks, BiVoting performs better than the best method.

Recommendation Algorithm Based on Community Detection in Bipartite Networks

A cascade information diffusion based label propagation algorithm for community detection in dynamic social networks

There is an increasing recognition on community detection in complex networks in recent years. In this study, we improve a recently proposed memetic algorithm for community detection in networks. By introducing a Population Generation via Label Propagation (PGLP) tactic, an Elitism Strategy (ES) and an Improved Simulated Annealing Combined Local Search (ISACLS) strategy, the improved memetic algorithm called (iMeme-Net) is put forward for solving community detection problems. Experiments on both computer-generated and real-world networks show the effectiveness and the multi-resolution ability of the proposed method.

With the rapid increase in popularity of online social networks, community detection in these networks has become a key aspect of research field. Overlapping community detection is an important NP-hard problem of social network analysis. Modularity-based community detection is one of the most widely used approaches for social network analysis. However, modularity-based community detection technique may fail to resolve small-size communities. Hence, we propose a novel two-step approach for overlapping community detection in social networks. In the first step, modularity density-based hybrid meta-heuristics approach is used to find the disjoint communities and the quality of these disjoint communities can be verified using Silhouette coefficient. In the second step, the quality disjoint communities with low computation cost are used to detect overlapping nodes based on Min-Max Ratio of minimum(indegree, outdegree) to the maximum(indegree, outdegree) values of nodes. We tested the proposed algorithm based on 10 standard community quality metrics along with Silhouette score using seven standard datasets. Experimental results demonstrate that the proposed approach outperforms the current state-of-the-art works in terms of quality and scalability.

Previous studies on network mining have focused primarily on learning a single task (such as classification or community detection) on a given network. This paper considers the problem of multi-task learning on heterogeneous network data. Specifically, we present a novel framework that enables one to perform classification on one network and community detection in another related network. Multi-task learning is accomplished by introducing a joint objective function that must be optimized to ensure the classes in one network are consistent with the link structure, nodal attributes, as well as the communities detected in another network. We provide both theoretical and empirical analysis of the framework. We also show that the framework can be extended to incorporate prior information about the correspondences between the clusters and classes in different networks. Experiments performed on both real-world and synthetic data sets demonstrate the effectiveness of the joint framework compared to applying classification and community detection algorithms on each network separately.

A spreading activation-based label propagation algorithm for overlapping community detection in dynamic social networks

There is a large amount of information in the network data that we can exploit. It is difficult for classical community detection algorithms to handle network data with sparse topology. Representation learning of network data is usually paired with clustering algorithms to solve the community detection problem. Meanwhile, there is always an unpredictable distribution of class clusters output by graph representation learning. Therefore, we propose an improved density peak clustering algorithm (ILDPC) for the community detection problem, which improves the local density mechanism in the original algorithm and can better accommodate class clusters of different shapes. And we study the community detection in network data. The algorithm is paired with the benchmark model Graph sample and aggregate (GraphSAGE) to show the adaptability of ILDPC for community detection. The plotted decision diagram shows that the ILDPC algorithm is more discriminative in selecting density peak points compared to the original algorithm. Finally, the performance of K-means and other clustering algorithms on this benchmark model is compared, and the algorithm is proved to be more suitable for community detection in sparse networks with the benchmark model on the evaluation criterion F1-score. The sensitivity of the parameters of the ILDPC algorithm to the low-dimensional vector set output by the benchmark model GraphSAGE is also analyzed.

Community structure is one of the vital characteristics of complex networks. How to effectively detect communities is a hot issue. From the perspective of information theory, the community structure of complex networks can be detected and revealed more accurately. This research introduces the average mutual information (AMI) into the detection process of the multi-label propagation algorithm (MLPA) and proposes a new community detection algorithm AMI-MLPA. The algorithm initially determines the propagation order according to the influence of nodes in the network. By selecting the label with stronger propagation intensity and smaller conditional entropy in the process of label propagation, a more reasonable community partition can be obtained. Experiments on real-world datasets and synthetic datasets show that the algorithm is better than FastGN, GN, and other LPA-based algorithms in general, with high accuracy of results on large-scale synthetic networks, which verifies the effectiveness of the algorithm.

Communities are basic units of complex networks and understanding of their structure help us to understand the structure of a network. Communities are groups of nodes that have many links inside and few links outside them. Community detection in a network can be modeled as an optimization problem. We can use some measures such as Modularity and Community Score for evaluating the quality of a partition of nodes. In this paper, we present a new algorithm for detecting communities in networks based on an Estimation of Distribution Algorithm (EDA) with the assumption that the problem variables are independent. EDAs are those evolutionary algorithms that build and sample the probabilistic models of selected solutions instead of using crossover and mutation operators. In this paper, we assess our algorithm by synthetic and real data sets and compare it with other community detection algorithms.

The problem of community detection is relevant in many disciplines of science and modularity optimization is the widely accepted method for this purpose. It has recently been shown that this approach presents a resolution limit by which it is not possible to detect communities with sizes smaller than a threshold, which depends on the network size. Moreover, it might happen that the communities resulting from such an approach do not satisfy the usual qualitative definition of commune; i.e., nodes in a commune are more connected among themselves than to nodes outside the commune. In this paper we present a different method for community detection in complex networks. We define merit factors based on the weak and strong community definitions formulated by Radicchi [Proc. Natl. Acad. Sci. U.S.A. 101, 2658 (2004)] and we show that these local definitions avoid the resolution limit problem found in the modularity optimization approach.

Community detection problem has been studied for years, but no agreement on the common definition of community has been reached till now. One topology may be of different types, unipartite or bipartite/multipartite. The previous literatures mostly proposed only one type of community. As the definition of community is understood differently, the grouping results are always applicable to some specified networks. If the definition changes, the grouping result will no longer be ``good''. This paper proposes an energy model to find communities in a PPI network and a hierarchical method to analyze relationship of vertices inside community. First, by analyzing the definition of community, energy model is proposed based on the characteristics of the PPI network types which are unipartite, bipartite or mixed type with both unipartite and bipartite. Second, energy model is used to find overlapping communities in PPI networks. Third, by finding the important vertices and the hierarchical levels inside a community. The experiment results show that the energy model is applicable to unipartite, bipartite or mixed PPI networks. Although the understanding of communities and the community results are different by using different community detection methods, the hierarchial method get the same level result based on different community results for a network. Hierarchical method inside community solves the limitation problem, makes community detection more accurately and universally. Furthermore, Finding local important vertices can control the spread of information of the whole network efficiently.

In this paper, we propose a new algorithm for the joint clustering of two sets of statistical units N\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\mathcal {N}$$\\end{document} and M\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\mathcal {M}$$\\end{document} which are also equipped with an adjacency structure which is represented by a bipartite network. Our model is based on the fuzzy Partition Around Medoids, and it combines it with techniques for community detection in bipartite complex networks based on Barber modularity maximization. The goal is to produce a partition of N∪M\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\mathcal {N}\\cup \\mathcal {M}$$\\end{document} into clusters, each of which is also identified by two medoids, one in N\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\mathcal {N}$$\\end{document} and one in M\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\mathcal {M}$$\\end{document}, which represent the typical units in the cluster for each set. Such clusters are optimized so that units in the same cluster both have similar values on their attributes and are likely to be adjacent. We test the algorithm on both simulated and real data, to show how it is able to capture a wide range of different interactions between the distribution of the attributes and the network structure.