Compensation among root classes in Phaseolus vulgaris L.

Basal root whorl number: a modulator of phosphorus acquisition in common bean (Phaseolus vulgaris).

Roots function dually as a support system and as the nutrient uptake organ of plants. Root morphology changes in response to the soil environment to minimize the metabolic cost of maintaining the root system, while maximizing nutrient acquisition. In response to nutrient-limiting conditions, plants may increase root fineness or specific root length (root length per gram root weight), root/shoot ratio, or root hair length and number. Each of these adaptations involves a different metabolic cost to the plant, with root hair formation as the least costly change, buffering against more costly changes in root/shoot ratio. Mycorrhizal symbiosis is another alternative to such changes. Plants with high degrees of dependence on the symbiosis have coarser root systems, less plasticity in root/shoot ratio, and develop fewer root hairs in low-fertility soils. In nutrient-limited soils, plants highly dependent on mycorrhiza reduce metabolic cost by developing an even more coarse or magnolioid root system, which is less able to obtain nutrients and thus creates a greater dependence of the plant on the symbiosis. These subtle changes in root architecture may be induced by mycorrhizal fungi and can be quantified using topological analysis of rooting patterns. The ability of mycorrhizal fungi to elicit change in root architecture appears to be limited to plant species which are highly dependent upon mycorrhizal symbiosis.

The root system is responsible for water and nutrients uptake from the soil, and therefore, its extension is basic for an efficient acquisition. The maize root system is formed by different types of roots, and the lateral root branching substantially increases the surface for nutrient uptake. Therefore, the regulation of lateral root formation is fundamental in the development of root functions. Root architecture is basically controlled by auxin and cytokinins, which antagonize in the formation of lateral roots (LR) along the primary root axis, with auxin, a stimulator, and cytokinins inhibitors of LR development. This interaction has been analyzed in several zones along the primary root where LRs in different developmental stages were located. The root has been divided into several zones, such as meristem, elongation zone, and mature zone, according to the developmental processes occurring in each one. As Arabidopsis root elongated more slowly than maize root, these zones are shorter, and its delimitation is more difficult. However, these zones have previously been delimitated clearly in maize, and therefore, they analyze the effect of exogenous hormones in several LR developmental stages. The inhibitory effect of cytokinin on lateral root formation was observed in already elongated primary root zones in which initial events to form new lateral roots are taking place. Contrarily, auxin increased LR formation in the primary root segments elongated in the presence of the hormone. The inhibitory effect of cytokinin was reversed by auxin in a concentration-dependent manner when both hormones were combined. However, auxin is unable to recover LR development in primary root zones that have been previously elongated only in the presence of cytokinin. This antagonistic auxin-cytokinin effect on LR development depended on the balance between both hormones, which controls the root system architecture and determines the formation of LR during the process of initiation.

Changes in root architecture are one of the adaptive strategies used by plants to compensate for local phosphate (Pi) deficiency in soils. Root architecture variables triggered by Pi availability are well documented in Arabidopsis (Arabidopsis thaliana), but the molecular mechanisms behind these adaptive responses remain to be elucidated. By the use of transcriptomic and quantitative RT-PCR analysis, we observed that an AINTEGUMENTA-like gene, named PRD for Phosphate Root Development, was rapidly repressed in roots under low Pi conditions. The physiological function of the PRD gene was analyzed through the null allele mutant prd, which displayed less development of primary and lateral roots under Pi-starvation conditions than wild-type plants. Complementation of the prd mutant with the wild-type gene led to a similar response to Pi starvation as wild-type plants, indicating the complete rescue of the mutant phenotype. These results suggest that PRD gene is involved in the regulation of root architectural responses to Pi starvation by controlling primary and lateral root elongation. This model is in agreement with the tissue-specific pattern of PRD gene expression, which was observed to occur specifically in the apex in both the primary and lateral roots. However, Pi influx, anionic profiles and root expression of genes typically induced by Pi starvation, such as high affinity Pi transporters (PHT1;1 and PHT1;4) and an acid phosphatase (AtACP5), were similar in wild type and prd plants in response to Pi starvation. These results support the hypothesis that the PRD gene is not a checkpoint for Pi-starvation responses, but acts specifically as a regulator of root architectural responses to Pi starvation.

Theoretical evidence for the functional benefit of root cortical aerenchyma in soils with low phosphorus availability.

Root architecture can be very important in plant productivity. The importance of studies on root morphology and development is discussed to improve seedling growth. Root systems of dicotyledonous species are reviewed, with emphasis on differences between growth of basal and lateral roots. The presence of different types of roots in plant species suggests possible differences in function as well. The architecture of a root system related to its functions is considered. Classical methods for studying root systems comprise excavation of root system, direct observation, and indirect analyses. While the first method is destructive and the third is effective in understanding root architecture only on a relatively gross scale, observation methods allow the scientist a complete a nondestructive architectural study of a root system. The three groups are reviewed related to their potential to give valuable information related to the root architecture and development of the seedling, with emphasis on the availability of a medium-transparent plant-growing system, enabling nondestructive daily observations and plant measurements under controlled environmental conditions. Effects of CO 2 enrichment on seedling growth is reviewed, emphasizing the effects of CO 2 on root growth.

SPACSYS: Integration of a 3D root architecture component to carbon, nitrogen and water cycling—Model description

Total root biomass of two black bean (Phaseolus vulgaris L.) cultivars, ‘Black Turtle Soup’ (BTS) and ‘Strain 39,’ and four black‐seeded lines (70001, 70002, 70003, and 70004) was partitioned into adventitious, basal, and taproot components at several growth stages under both greenhouse and field conditions. Basal root weights were significantly higher for the four lines in the field and for 70001 and 70002 in the greenhouse than for BTS and Strain 39. Genotypes did not differ for adventitious root weights in both environments. Taproot weights were higher for all the lines compared with BTS; and for 70001, 70003, and 70004 compared with Strain 39 in the field. Genotypes did not differ for taproot weights in the greenhouse.Stem, hypocotyl, and taproot diameters were significantly higher for all the lines than for the two cultivars in the field. Hypocotyl and stem diameters of all lines were higher than for the two cultivars, except for stem diameter of 70002 when compared with BTS in the greenhouse. Taproot diameters of 70001, 70002, and 70004 were significantly higher than for Strain 39 under greenhouse conditions. Basal root diameters (sum of individual basal root diameters) of the four lines were significantly higher than for BTS or Strain 39 in both experiments. Genotypes did^ot differ in the number of basal roots under field conditions.In the field, most root parameters increased up to the seed initiation stage, followed by a significant decrease or no further increase at the pod fill stage. Significant stage ✕ genotype interactions occurred for basal root diameter and hypocotyl diameter in the field and for taproot weight, stem, hypocotyl, and basal root diameters in the greenhouse. The erect plant type of the lines may be attributable to larger basal roots.

Fusarium root rot is a major limiting factor in snap bean ( Phaseolus vulgaris L.) production. The level of genetic resistance in commercial bean cultivars is minimal and disease is frequently exacerbated by environmental factors. We investigated the contribution of vigorous, adventitious roots to enhancing root rot tolerance in snap bean. Seedling root system architecture was evaluated in 17 recombinant inbred lines (RILs) from a cross of a resistant snap bean line (FR266) and a susceptible dry bean cultivar (Montcalm). The RILs varied in tolerance to Fusarium root rot. Although overall length and branching density (as measured by fractal dimension and meristem numbers) of root systems were not related to root rot resistance, the lateral root number at the root: shoot interface was positively correlated with genotype tolerance ( R 2 = 0.6 * ). Root diameter was also positively correlated with tolerance; this is consistent with the hypothesis that larger adventitious and basal roots are beneficial under disease stress. A field-based study of commercial snap bean cultivars compared raised and flat-bed systems of production, in a soil inoculated with Fusarium solani f. sp. phaseoli. Substantially greater yields (40% to 90%) were observed in raised beds. Root vigor was relatively high (root length density >0.2 cm·cm −3 ) and root rot scores were lower with raised than with flat-beds, in 2001, but not in 2000. Overall, this is suggestive that integrated crop management practices can improve lateral root vigor and reduce root rot severity.

Understanding the development of roots exposed to contaminants and the potential of plant-associated bacteria for optimization of growth.

We evaluated the effect of root shallowness on interplant competition for phosphorus in common bean (Phaseolus vulgaris L.). Recombinant inbred lines (RILs) segregating for basal root gravitropism were evaluated in monogenetic and polygenetic stands with varying phosphorus availability in the field in South China and in solution culture and solid media in controlled environments. In the field, shallow‐rooted RILs were more productive than deep‐rooted RILs. Shoot biomass of these RILs almost doubled the deep‐rooted ones when in competition. In the greenhouse, three treatments representing different soil phosphorus distributions were compared. Root shallowness did not confer any competitive advantage when phosphorus availability was uniformly low or uniformly high, but did confer a competitive advantage when phosphorus availability was concentrated in the topsoil. Shallow and deep‐rooted RILs did not differ in response to phosphorus availability in solution culture where phosphorus is mixed and uniformly available. Our results demonstrate that basal root gravitropism, which is a specific root architectural trait under genetic control, is important for belowground competition in low phosphorus soils.

Because of the crucial role coarse roots (>2 mm diameter) play in plant functions and terrestrial ecosystems, detecting and quantifying the size, architecture, and biomass of coarse roots are important. Traditional excavation methods are labor intensive and destructive, with limited quantification and repeatability of measurements over time. As a nondestructive geophysical tool for delineating buried features in shallow subsurface, ground penetrating radar (GPR) has been applied for coarse root detection since 1999. This article reviews the state-of-knowledge of coarse root detection and quantification using GPR, and discusses its potentials, constraints, possible solutions, and future outlooks. Some useful suggestions are provided that can guide future studies in this field. The feasibility and accuracy of coarse root investigation by GPR have been tested in various site conditions (mostly in controlled conditions or within plantations) and for different plant species (mostly tree root systems). Thus far, single coarse root identification and coarse root system mapping have been conducted using GPR, including roots under pavements in urban environment. Coarse root diameter and biomass have been estimated from indexes extracted from root GPR radargrams. Coarse root development can be observed by repeated GPR scanning over time. Successful GPR-based coarse root investigation is site specific, and only under suitable conditions can reliable measurements be accomplished. The best quality of root detection by GPR is achieved in well-drained and electrically-resistive soils (such as sands) under dry conditions. Numerous factors such as local soil conditions, root electromagnetic properties, and GPR antenna frequency can impact the reliability and accuracy of GPR detection and quantification of coarse roots. As GPR design, data processing software, field data collection protocols, and root parameters estimation methods are continuously improved, this noninvasive technique could offer greater potential to study coarse roots.

The primary root, or the root that is initiated in the embryo within the seed, is the original root of a plant to discover its soil environment. It is essential for the anchoring of the plant and ensures plant growth through the uptake of water and nutrients. In this review, we describe the tissue organisation of the primary root, not only largely focusing on the model species Arabidopsis thaliana but also mentioning some other plant species where relevant. We also flag, non‐comprehensively, some of the molecular factors important for proper root formation and growth, plant growth regulators or hormones that determine primary root growth as well as interactions with the environment that shape the root system and refer to relevant literature for further detailed information. Key Concepts The primary root is initiated in the embryo within the seed. The primary root is only a (small) part of the complex root system architecture. The primary root is an ideal model system to study cell division, differentiation and identity. There are complex and tightly regulated molecular patterning events to ensure proper primary root tissue organisation and a lot of these regulations involve plant hormones. The primary root is a dynamic interface with the soil environment.

The soil in the production of clonal seedlings of black pepper (Piper nigrum L.) contributes to fusarium and nematodes infestation in commercial crops, and thus the usage of alternative substrates might be a preventive control measure against these pathogens. The aim of this study was to investigate the rhizogenic behavior of the cultivars Bragantina, Iaçará and Guajarina of black pepper in different substrates. The experimental design was in randomized blocks in a 3x4 factorial design (cultivars: Bragantina, Iaçará and Guajarina x substrates: soil + organic compound (18%), vermiculite, carbonized rice hulls and commercial substrate), with four replications of 16 cuttings each. The evaluated characteristics were: survival (%); rooting (basal or nodal) (%); nodal rooting (%); basal rooting (%); number of nodal roots; number of basal roots; total number of roots; length of the largest nodal root (cm); basal root length (cm); nodal root volume (cm3); basal root volume (cm3); Total root volume (cm3); nodal root dry mass (mg); basal root dry mass (mg) and the total root dry mass (mg). There are differences within black pepper cultivars as to the characteristics related to the root system. The vermiculite substrate was the most suitable, and carbonized rice hull is not recommended for the adventitious rooting of cuttings of cultivars Bragantina, Iaçará and Guajarina.

BackgroundRoot system architecture is important for water acquisition and nutrient acquisition for all crops. In soybean breeding programs, wild soybean alleles have been used successfully to enhance yield and seed composition traits, but have never been investigated to improve root system architecture. Therefore, in this study, high-density single-feature polymorphic markers and simple sequence repeats were used to map quantitative trait loci (QTLs) governing root system architecture in an inter-specific soybean mapping population developed from a cross between Glycine max and Glycine soja.ResultsWild and cultivated soybean both contributed alleles towards significant additive large effect QTLs on chromosome 6 and 7 for a longer total root length and root distribution, respectively. Epistatic effect QTLs were also identified for taproot length, average diameter, and root distribution. These root traits will influence the water and nutrient uptake in soybean. Two cell division-related genes (D type cyclin and auxin efflux carrier protein) with insertion/deletion variations might contribute to the shorter root phenotypes observed in G. soja compared with cultivated soybean. Based on the location of the QTLs and sequence information from a second G. soja accession, three genes (slow anion channel associated 1 like, Auxin responsive NEDD8-activating complex and peroxidase), each with a non-synonymous single nucleotide polymorphism mutation were identified, which may also contribute to changes in root architecture in the cultivated soybean. In addition, Apoptosis inhibitor 5-like on chromosome 7 and slow anion channel associated 1-like on chromosome 15 had epistatic interactions for taproot length QTLs in soybean.ConclusionRare alleles from a G. soja accession are expected to enhance our understanding of the genetic components involved in root architecture traits, and could be combined to improve root system and drought adaptation in soybean.Electronic supplementary materialThe online version of this article (doi:10.1186/s12864-015-1334-6) contains supplementary material, which is available to authorized users.