Computational Methods in Classical Physics

Chapter 6 - Eliminating the Security Weakness of Linux and Unix Operating Systems

This paper offers an open distributed substation automation system which adopts industrial standards in hardware and software to meet modern electric power utilities aim for operation efficiency, substation automation and lower maintenance cost. The key technologies supported by industrial standards in the power systems control area include RISC processors, UNIX operating system, X-Window/Motif graphical user interface, Ethernet-LAN, TCP/IP, fiber optics, open communication protocols, and object-oriented design.

ID: 103 GAMOS: Implementation of a graphical user interface for dosimetry calculation in radiotherapy

Dynasol: A visual quantum dynamics package

Nowadays, JavaTM has become a widespread standard for object oriented programming and a growing number of applications is implemented in this language. For this reason, the Global Information Systems Group has chosen JavaTM as the language for the API to all the systems of the OMS family. This API, named OMSjp, serves as a uniform platform for OMS based application development. Furthermore, the group has created a graphical user interface on top of OMSjp for modelling and administrating OMS databases. This front-end is applicable to all OMS platforms supported by OMSjp. Again, this graphical user interface has been implemented in JavaTM. It has been developped as an Eclipse plug-in and allows OMS databases to be managed from within an integrated development environment. However, a schema editor for graphically editing the type and classification schema was still missing. The aim of this diploma thesis is to enrich the existing front-end with the ability to build and edit databases by means of a schema diagram, thereby minimising the user’s effort to create and maintain OMS databases.

Graphical User Interfaces (GUIs) are amongst the most common user interfaces, enabling interactions with applications through mouse movements and key presses. Tools for automated testing of programs through their GUI exist, however they usually rely on operating system or framework specific knowledge to interact with an application. Due to frequent operating system updates, which can remove required information, and a large variety of different GUI frameworks using unique underlying data structures, such tools rapidly become obsolete, Consequently, for an automated GUI test generation tool, supporting many frameworks and operating systems is impractical. We propose a technique for improving GUI testing by automatically identifying GUI widgets in screen shots using machine learning techniques. As training data, we generate randomized GUIs to automatically extract widget information. The resulting model provides guidance to GUI testing tools in environments not currently supported by deriving GUI widget information from screen shots only. In our experiments, we found that identifying GUI widgets in screen shots and using this information to guide random testing achieved a significantly higher branch coverage in 18 of 20 applications, with an average increase of 42.5% when compared to conventional random testing.

BackgroundFine-mapping projects require a high density of SNP markers and positional candidate gene sequences. In species with incomplete genomic sequence, the DNA sequences needed to generate markers for fine-mapping within a linkage analysis confidence interval may be available but may not have been assembled. To manually piece these sequences together is laborious and costly. Moreover, annotation and assembly of short, incomplete DNA sequences is time consuming and not always straightforward.FindingsWe have created a tool called BEAP that combines BLAST and CAP3 to retrieve sequences and construct contigs for localized genomic regions in species with unfinished sequence drafts. The rational is that a completed genome can be used as a template to query target genomic sequence for closing the gaps or extending contig sequence length in species whose genome is incomplete on the basis that good homology exists. Each user must define what template sequence is appropriate based on comparative mapping data such as radiation hybrid (RH) maps or other evidence linking the gene sequence of the template species to the target species.ConclusionThe BEAP software creates contigs suitable for discovery of orthologous genes for positional cloning. The resulting sequence alignments can be viewed graphically with a Java graphical user interface (GUI), allowing users to evaluate contig sequence quality and predict SNPs. We demonstrate the successful use of BEAP to generate genomic template sequence for positional cloning of the Angus dwarfism mutation. The software is available for free online for use on UNIX systems at .

Mark Watson Morgan Kaufmann Publishers, San Francisco, 1997, 377 pp. ISBN 1-55860-420-0, $44.95 This book is well written and organized to cover how to apply AI (Artificial Intelligence) techniques for practical Internet and Intranet tools by using the Java programming language. In the book, the author uses neural network and genetic algorithms to develop distributed systems that are applied for the Internet and Intranets, such as client/server model and information retrieval tool and so on. Part 1 begins with a good general introduction to AI. The history and survey of Artificial Intelligence research are given briefly. In addition, symbolic processing versus neural networks approaches are discussed. This author opts to use neural network to develop example Internet/Intranet systems in the book. Part 2 consists of Java programs developed for AI, neural networks, genetic algorithms, natural language processing, and expert systems. Chapter 2 illustrates Graphical User Interface (GUI) class that is derived from Applet and Canvas classes in Java, which is used in most example programs in the book. Chapter 3 introduces a frame data structure that is used as a message in distributed systems in the later chapters. Chapter 4 shows neural network classes developed in Java and its theory and implementation. Chapter 5 explains the genetic algorithms and the Java genetic algorithm classes. Chapter 6 describes how to develop and implement natural language processing classes using Java. Chapter 7 shows how to share data objects in distributed systems. For example, distributed AI agent classes are developed to share data objects, WWW data collection agent classes are shown to retrieve documents in the Internet, and small POP (Post Office Protocol) mail classes are developed to send and receive mails. Chapter 8 illustrates how to develop expert systems by using Java Jess, which is based on OPS5/CLIPS expert systems. Part 3 explains how to generate and implement the projects using the Java classes that are developed in Part 2. Chapter 9 shows the project that demonstrates the use of genetic algorithms in chapter 5 to control enemy ships in a scrolling arcade game. Chapter 10 describes the real-time handwriting recognition system developed by using the neural network classes in chapter 4. Chapter 11 illustrates a greedy algorithm to optimize neural networks that is based on the author’s hand-tuning neural training data. Chapter 12 improves neural network training data by applying genetic algorithms, to discard bad training data and to avoid discarding good training data. Chapter 13 describes the distributed natural language processing system that uses natural language processing classes in chapter 6. The data structures in chapter 2 are used to store historical data in a separate server application on any other computer in the Internet or Intranets. The final chapter provides the design and implementation of a complete agent-based information retrieval tool for the Internet. The retrieved documents are stored in ASCII or HTML format. This book is a very good reference book for anyone interested in developing systems using Java in distributed environments, especially applying AI techniques. Also, the author provides the CD-ROM that includes the source code for Java classes developed in the book. Haklin Kimm, University of Tennessee

AML/X is a modern general purpose high level programming language, aimed at applications in manufacturing and computer aided design. It includes features for both conventional and cPbject-oriented programming. The AML/X interpreter is implemented in C and has been ported to IBM 370, Motorola 68000, and IBM PC hardware, running under CMS, UNIX, XENIX, and DOS. This paper describes the rationale for AML/X and gives an overview of the language itself.

This report summarizes the final product developed for the US DOE Small Business Innovation Research (SBIR) Phase II grant made to Engineering Mechanics Corporation of Columbus (Emc2) between April 16, 2014 and August 31, 2016 titled ‘Adoption of High Performance Computational (HPC) Modeling Software for Widespread Use in the Manufacture of Welded Structures’. Many US companies have moved fabrication and production facilities off shore because of cheaper labor costs. A key aspect in bringing these jobs back to the US is the use of technology to render US-made fabrications more cost-efficient overall with higher quality. One significant advantage that has emerged in the US over the last two decades is the use of virtual design for fabrication of small and large structures in weld fabrication industries. Industries that use virtual design and analysis tools have reduced material part size, developed environmentally-friendly fabrication processes, improved product quality and performance, and reduced manufacturing costs. Indeed, Caterpillar Inc. (CAT), one of the partners in this effort, continues to have a large fabrication presence in the US because of the use of weld fabrication modeling to optimize fabrications by controlling weld residual stresses and distortions and improving fatigue, corrosion, and fracture performance. This report describes Emc2’s DOE SBIR Phase II final results to extend an existing, state-of-the-art software code, Virtual Fabrication Technology (VFT®), currently used to design and model large welded structures prior to fabrication - to a broader range of products with widespread applications for small and medium-sized enterprises (SMEs). VFT® helps control distortion, can minimize and/or control residual stresses, control welding microstructure, and pre-determine welding parameters such as weld-sequencing, pre-bending, thermal-tensioning, etc. VFT® uses material properties, consumable properties, etc. as inputs. Through VFT®, manufacturing companies can avoid costly design changes after fabrication. This leads to the concept of joint design/fabrication where these important disciplines are intimately linked to minimize fabrication costs. Finally service performance (such as fatigue, corrosion, and fracture/damage) can be improved using this product. Emc2’s DOE SBIR Phase II effort successfully adapted VFT® to perform efficiently in an HPC environment independent of commercial software on a platform to permit easy and cost effective access to the code. This provides the key for SMEs to access this sophisticated and proven methodology that is quick, accurate, cost effective and available “on-demand” to address weld-simulation and fabrication problems prior to manufacture. In addition, other organizations, such as Government agencies and large companies, may have a need for spot use of such a tool. The open source code, WARP3D, a high performance finite element code used in fracture and damage assessment of structures, was significantly modified so computational weld problems can be solved efficiently on multiple processors and threads with VFT®. The thermal solver for VFT®, based on a series of closed form solution approximations, was extensively enhanced for solution on multiple processors greatly increasing overall speed. In addition, the graphical user interface (GUI) was re-written to permit SMEs access to an HPC environment at the Ohio Super Computer Center (OSC) to integrate these solutions with WARP3D. The GUI is used to define all weld pass descriptions, number of passes, material properties, consumable properties, weld speed, etc. for the structure to be modeled. The GUI was enhanced to make it more user-friendly so that non-experts can perform weld modeling. Finally, an extensive outreach program to market this capability to fabrication companies was performed. This access will permit SMEs to perform weld modeling to improve their competitiveness at a reasonable cost.

We have developed a Machine Physics Application Program (MPAP) package for control, commissioning and error finding to be used on the SRRC storage ring with user friendly graphic interface. The program gives on-line machine parameters as well as Twiss functions together with the machine elements in graphic form. It supported the following capabilities: machine modeling, orbit corrections and adjusting, tune adjustments, error findings for the misalignment and strength setting, etc. The code is written in ANSI C and can be imported to both VAX and UNIX operating systems which support the standard X-window/Motif. The arrangements, of the code is in such a way that the interface with the on-line control data base can be easily implemented for use on any machine. It can be used both for on-line control and/or for off-line analysis. >

Systems programming with C and Unix

Control and risk are the two parts of the coin. Risk assessment is the process of identifying uncertainties, vulnerabilities and threats to the operating system resources in order to achieve business objectives. Risk evaluation involved deciding what counter measures to take in reducing uncertainty to the lowest level of risk. Control is probably the most important aspect of communications security and becoming increasingly important as basic building block for system security. Advanced Encryption Standard (AES) is a primary method of protecting system resources. AES is inversely proportional to the Risk (C=K/R) & mean while control is directly proportional to the quality of standard. AES Control will be optimize the risk as well as improve the IS standard. Control is directly proportional to risk mitigation & mitigation is directly proportional to standard. This paper contributes to the development of an optimization method that aims to determine the optimal cost to be invested into security method, model & mechanisms deciding on the measure component of operating system resources (i.e. Processor, Memory & Encryption). Furthermore, the method & mechanism optimize the cost, time & resources is supposed to optimize the system risks. The proposed model would be update the value of Processor, Memory & Encryption key dynamically as per business requirement and availability of technology & resources. Proposed model is going to be optimizing risk and maximizing the performance. In this study the researchers develop an isomorphic graph model for optimizing risk in the Unix operating system.

One of the reasons for the dramatic growth in popularity of the UNIX™ operating system is the portability of both the operating system and its associated user-level programs. This paper highlights the portability of the UNIX operating system, presents some general porting considerations, and shows how some of the ideas were used in actual UNIX operating system porting efforts. Discussions of the efforts associated with porting the UNIX operating system to an Intel™ 8086-based system, two UNI VAC™ 1100 Series processors, and the AT&T 3B20S and 3B5 minicomputers are presented.

In this paper the author addresses the issue of collective administration of graphical user interfaces according to the impact of the CJEU decision in BSA v. Ministry of Culture on the case-law in one of EU Member states (Czech Republic). The author analyses the decision of the Czech Supreme Court where this Court concluded that visitors of Internet cafés use graphical user interface actively, which represents relevant usage of a copyrighted works within the meaning of Art. 18 the Czech Copyright Act. In this paper, attention is first paid to the definition of graphical user interface, its brief history and possible regimes of intellectual property protection. Subsequently, the author focuses on copyright protection of graphical user interfaces in the Czech law and interprets the BSA decision from the perspective of collective administration of copyright. Although the graphical user interfaces are independent objects of the copyright protection, if they are used while running the computer program the legal regulation of computer programs has priority. Based on conclusions reached by the Supreme Administrative Court of the Czech Republic in the BSA case, the author claims that collective administration of graphical user interfaces is neither reasonable nor effective.