Controlling the Assembly of Silver Nanocubes through Selective Functionalization of Their Faces

We report the deposition of DNA nanostructures on self-assembled monolayers (SAMs), focusing on the stability of DNA nanostructures on both hydrophilic and hydrophobic SAMs. Our study reveals distinct outcomes based on the nature of the SAMs. DNA nanostructures maintain structural integrity on hydrophilic SAMs, whereas they experience deformation on the most hydrophobic SAMs. Interestingly, the stability of DNA nanostructures is also sensitive to postdeposition washing procedures. The observations shed light on the intricate interplay between the wettability of SAMs and the structural stability of the DNA nanostructures. An empirical trend emerged where increased hydrophobicity is associated with a more severe deformation of DNA nanostructures. This deformation is hypothesized to arise from disrupted hydrogen bonding within DNA nanostructures and is exacerbated by interfacial tension during the drying process. Our study also highlights the potential role of π-π stacking interactions between the DNA bases and the SAMs in stabilizing the DNA nanostructures. Our work expands the type of substrates that can be used for applications of DNA nanotechnology and highlights the need for a comprehensive understanding of the interactions between DNA nanostructures with different surfaces.

Method of oriented and activity-preserved immobilization of biologically active proteins based on concepts of active-site masking and kinetic control was previously reported. We extended our study and found that the surface hydrophobicity had a noticeable effect on the activity of active-site protected immobilized (PIM) Taq DNA polymerase on mixed self-assembled monolayer (SAM) manufactured on Au surface. Hydrophobic SAM was created by using 12-mercaptododecanoic acid and 1-heptanethiol. The resulting Taq DNA polymerase activity was measured by performing PCR amplification and compared with previously reported values acquired with hydrophilic SAM. The maximum activity of immobilized Taq DNA polymerase was achieved at 17.5% of 12-mercaptododecanoic acid and within 90 min of reaction time which are higher than those acquired with hydrophilic SAM; maximum activity at 5% of 12-mercaptododecanoic acid and at 10 min. In order to be applicable to commercial level, immobilized enzyme need to be stable, reusable and storable. PIM Taq DNA polymerase was stably attached to the surface and could be used for as many as 10 PCR runs which were comparable to solution-phase enzyme. Even after 56 days of storage at 4 °C, immobilized enzyme pertained 70% of the initial PIM enzyme activity. These data suggest that PIM Taq DNA polymerase can be used for various commercial applications.

A method for the spectroscopic characterization of interfacial fluid molecular structure near solid substrates is reported. The thickness and interfacial molecular structure of residual ultrathin D20 films remaining after forced dewetting on alkanethiolate self-assembled monolayers (SAMs) of 11 1-mercaptoundecanoic acid (11-MUA), 11-mercaptoundecanol (11-MUD), and undecanethiol (UDT) on Ag are investigated using ellipsometry and surface Raman spectroscopy. The residual film thickness left after withdrawal is greater on hydrophilic SAMs than on hydrophobic SAMs. This behavior is rationalized on the basis of differing degrees of fluid slip within the interfacial region due to different interfacial molecular structure. The v(O-D) regions of surface Raman spectra clearly indicate unique interfacial molecular properties within these films that differ from bulk D20. Although the residual films are created by shear forces and Marangoni flow at the three-phase line during the forced dewetting process, the nature of the films sampled optically must also be considered from the standpoint of thin film stability after dewetting. Thus, the resulting D20 films exist in vastly different morphologies depending on the nature of the water-SAM interactions. Residual D20 is proposed to exist as small nanodroplets on UDT surfaces due tospontaneous rupture of the film after dewetting. In contrast, on 11-MUD and 11-MUA surfaces, these films exist in a metastable state that retains their conformal nature on the underlying modified surface. Analysis of the peak intensity ratios of the so-called "ice-like" to "liquid-like" v(O-D) modes suggests more ice-like D20 character near 11-MUD surfaces, but more liquid-like character near 11-MUA and UDT surfaces. The creation of residual ultrathin films by forced dewetting is thus demonstrated to be a powerful method for characterizing interfacial molecular structure of fluids near a solid substrate under ambient conditions of temperature and pressure.

Semiconductor nanowires are an emerging class of materials with great potential for applications in future electronic devices. The small footprint and the large charge-carrier mobilities of nanowires make them potentially useful for applications with high-integration density, but also to replace thin-film transistors in large-area electronics. This thesis investigates the use of wet-chemically grown ZnO nanowires for the fabrication of high-performance, low-voltage field-effect transistors (FETs). The first part of this thesis addresses the electrical characteristics of the wet-chemically grown ZnO nanowires. The as-grown ZnO nanowires are highly conductive due to a large charge-carrier concentration caused by dopants unintentionally incorporated into the ZnO nanowires during the synthesis. This large charge-carrier concentration makes it difficult to modulate the conductivity of the nanowires by an external electric field, so that the as-grown wires are not suitable for FETs. A post-growth annealing step is employed to dramatically reduce the charge-carrier concentration of the nanowires which makes it possible to fabricate FETs with useful characteristics. ZnO-nanowire FETs in a global back-gate geometry based on annealed ZnO nanowires have a transconductance of 300 nS, an on/off current ratio of 107 and a subthrehold slope of 500 mV/decade. The maximum field-effect mobility of the annealed ZnO nanowires is around 50 cm2/Vs. An important requirement to obtain good FET characterisitcs is to minimize the influence of the source and drain contact resistance on the total device resistance. The material used for the source and drain contacts in this thesis is aluminum. It is demonstrated that the use of a plasma treatment in the contact regions prior to the evaporation of the aluminum contacts can greatly influence the contact properties between ZnO and aluminum. An argon-plasma treatment locally increases the charge-carrier concentration in the ZnO. It is shown that the doping effect of the argon-plasma treatment can be exploited to reduce the contact resistance between alumiunm and ZnO and improve the electrical performance of the FETs. In the second part of this thesis, the influence of the ambient air on the electrical characteristics of the ZnO-nanowire FETs is investigated. The electrical conductivity of the FETs is strongly affected by the distinct atmospheric conditions, which makes it difficult to obtain reliable FET characteristics. The potential of a self-assembled monolayer (SAM) based on fluoroalkylphosphonic acid molecules to passivate the ZnO nanowires against the undesirable effects of the ambient and to stabilize the electrical performance of ZnO-nanowire FETs is demonstrated. The stabilizing effect is attributed to the formation of a densely packed, hydrophobic SAM on the surface of ZnO and aluminum oxide. The quality of the hydrophobic SAMs is confirmed by means of water-contact-angle measurements on SAM-covered ZnO single crystals that show a contact angle of more than 110°. The third part of this thesis is dedicated to the fabrication of high-performance ZnO-nanowire FETs with patterned metal top-gate electrodes. A top-gate fabrication process is developed that uses a very thin gate dielectric consisting only of an alkylphosphonic acid SAM that can be deposited from solution. The insulating quality of the SAM is investigated for top-gate FETs that utilize either gold or aluminum for the top-gate electrode. Gold top-gate FETs show a transconductance of 1 µS, an on/off current ratio of 107, and a steep subthreshold slope of 90 mV/decade. The thin gate dielectric makes it possible to operate the gold top-gate FETs at low voltages of 1 V and simultaneously reduces the undesired gate current by more than three orders of magnitude compared to gold top-gate FETs that have been fabricated without a gate dielectric (MESFETs). The gate current of the gold top-gate FETs with SAM gate dielectric is as low as 1 pA for gate-source voltages between -1 V and 0.5 V. When aluminum is used for the top-gate electrode, a hybrid dielectric is formed at the interface between the SAM and the aluminum, consisting of the SAM and a spontaneously formed aluminum oxide layer. Owing to the hybrid gate dielectric, the aluminum top-gate FETs are operated with gate currents below 1 pA for voltages up to 3 V. The top-gate fabrication process does not require temperatures above 160 °C, which makes it possible to fabricate FETs on unconventional substrates that cannot tolerate high temperatures, such as glass or flexible plastics. Integrated circuits on single ZnO nanowires that are fabricated on glass and plastic substrates are demonstrated. The maximum switching frequency of the inverters is 1 MHz.

A self-assembled microarray (SAMA) of organic light-emitting diodes (OLEDs) has been fabricated using self-assembled monolayers (SAMs) by microcontact printing (μCP). The hydrophobic methyl-terminated SAMs modify the surface properties of the substrates to become hydrophobic, i.e., with low surface energy. Thus, the hydrophobic SAMs pattern, by the μCP, can be applied to form SAMAs on the patterned SAMs since the difference of the local surface energy modifies the patterns on the substrates. In this study, octadecyltrichlorosilane based hydrophobic methyl-terminated SAMs have been used and the fabricated OLEDs, with the SAMAs show local light emissions on the micron scale with efficient performances.

Gallium nitride, with a thin passivating layer of Ga2O3, has been functionalized with octadecyltrichlorosilane (OTS) and aminopropyltriethoxysilane (APTES) self-assembled monolayers (SAMs). Water contact angles, atomic force microscopy, and X-ray photoelectron spectroscopy were used for characterization of the bare and functionalized surfaces. The SAMs are stable in acetonitrile, but both the hydrophobic OTS SAM and the hydrophilic APTES SAM completely desorb after 1-24 h of immersion in water and common buffers. The concentration of gallium in solution after a clean GaN chip is immersed in water is consistent with dissolution of roughly one monolayer of interfacial gallium oxide. Dissolution of this oxide layer could account for the loss of SAMs from GaN surfaces.

To understand protein adsorption on a surface is very important in bio-related domains of technology and application such as biomaterials, implant biocompatibility, and biosensor technology. (Gray 2004) Self-assembled monolayers (SAMs) are excellent model surfaces for biology and biochemistry because they are stable, highly ordered, easy to prepare, and provide a wide range of organic functionality. (Love et al. 2005) Previous experimental studies (Ostuni et al. 2003; Prime & G.M. Whitesides 1991) have indicated that hydrophobic interactions are the major mechanism for protein adsorption on surfaces, and the dehydration of both the protein and hydrophobic SAMs provides an entropic driving force for protein adsorption. (Ostuni et al. 2003) Nonetheless, there are still many questions needed to be clarified and difficult to be investigated in experiments. Molecular dynamics (MD) simulation is a powerful tool that is able to investigate the atomic details of a molecular system. This paper summarizes the investigations of proteins adsorption on alkanethiol SAMs by means of MD simulations in order to expand the limited information that the experiments can provide. (Hung et al.2006; Hung et al.2010; Hung et al. 2011)

An attempt is made to estimate, via computer simulation of the force-distance relation, the free energy of adhesion between a phosphatidylethanolamine bilayer and an alkanethiolate self-assembled monolayer (SAM) in aqueous medium. The simulations are performed using the grand canonical Monte Carlo technique and atomistic force fields. The bilayer adhesion free energy is predicted to be -22 ± 3 mJ/m(2) (-1.4 ± 0.2 kcal/mol) on a hydrophilic carboxyl-terminated SAM and -1 ± 1 mJ/m(2) (-0.06 ± 0.06 kcal/mol) on a hydrophobic methyl-terminated SAM.

Zein, the prolamine of corn, has been investigated for its potential as an industrial biopolymer. In previous research, zein was plasticized with oleic acid and formed into sheets/films. Physical properties of films were affected by film structure and controlled in turn by zein-oleic acid interactions. The nature of such interactions is not well understood. Thus, protein-fatty acid interactions were investigated in this work by the use of surface plasmon resonance (SPR). Zein adsorption from 75% aqueous 2-propanol solutions, 0.05% to 0.5% w/v, onto hydrophilic and hydrophobic self-assembled monolayers (SAMs) formed by 11-mercaptoundecanoic acid and 1-octanethiol, respectively, was monitored by high time resolution SPR. Initial adsorption rate and ultimate surface coverage increased with bulk protein concentration for both surfaces. The initial slope of plotted adsorption isotherms was higher on 11-mercaptoundecanoic acid than on 1-octanethiol, indicating higher zein affinity for hydrophilic SAMs. Also, maximum adsorption values were higher for zein on hydrophilic than on hydrophobic SAMs. Flushing off loosely bound zein in the SPR cell allowed estimation of apparent monolayer values. Differences in monolayer values for hydrophobic and hydrophilic surfaces were explained in terms of zein adsorption footprint.

Supported lipid membranes are versatile biomimetic coatings for the chemical functionalization of inorganic surfaces. Developing simple and effective fabrication strategies to form supported lipid membranes with micropatterned geometries is a long-standing challenge. Herein, we demonstrate how the combination of chemical lift-off lithography (CLL) and easily prepared lipid bicelle nanostructures can yield micropatterned, supported lipid membranes on gold surfaces with high pattern resolution, conformal character, and biofunctionality. Using CLL, we functionalized gold surfaces with patterned arrays of hydrophilic and hydrophobic self-assembled monolayers (SAMs). Time-lapse fluorescence microscopy imaging revealed that lipid bicelles adsorbed preferentially onto the hydrophilic SAM regions, while there was negligible lipid adsorption onto the hydrophobic SAM regions. Functional receptors could be embedded within the lipid bicelles, which facilitated selective detection of receptor-ligand binding interactions in a model streptavidin-biotin system. Quartz crystal microbalance-dissipation measurements further identified that lipid bicelles adsorb irreversibly and remain intact on top of the hydrophilic SAM regions. Taken together, our findings indicate that lipid bicelles are useful lipid nanostructures for reproducibly assembling micropatterned, supported lipid membranes with precise pattern fidelity.

Selective deposition holds promise to simplify next-generation device fabrication and bring down economic cost. In this work, selectively depositing polymers on metal/dielectric patterns was achieved by spin dewetting, a phenomenon that refers to the dewetting of polymers during spin coating. Our strategy utilizes self-assembled monolayers (SAMs) to induce dewetting of polymers over some areas. Line patterns of Cu/SiO2 were investigated. A hydrophobic SAM, octyltrichlorosilane (OTS, Cl3Si–C8H17), was selectively formed on SiO2 in the presence of Cu to render SiO2 non-wettable. During a subsequent spin coating step, polymers dewet from OTS-functionalized SiO2 and coat Cu exclusively. The spin dewetting process is strongly dictated by the spin coating kinetics. A systematic study of the processing conditions revealed strong dependence of polymer film coverage on spin speed, solution concentration, polymer molecular weight, casting solvent, and SAM hydrophobicity.

In this paper, a flexible approach for chip to wafer high-accurate alignment and bonding is developed using a self-assembled monolayer (SAM). In this approach, a hydrophobic SAM, FDTS (CF <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> (CF <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> ) <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">7</sub> (CH <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> ) <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> SiCl <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> ), is successfully patterned by lift-off process on an oxidized silicon wafer to define the binding-sites. A certain volume of H <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> O (μ/mm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ) is dropped and then spread on the non-coated hydrophilic SiO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> binding-sites for self-alignment of various microelectromechanical systems (MEMS) and IC chips by capillary force of H <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> O. Our results demonstrate that reasonably high alignment speed (in milliseconds) and excellent alignment accuracy ( ≤ 1 μm) are achieved when the difference in the measured contact angle between hydrophobic FDTS and hydrophilic binding-sites is >;70°. It is also found that the hydrophilic frame at the edge of each binding-site is effective in achieving successful self-alignment, while a super fine pattern at the center of the binding-site can be used to control the bonding strength. The effects of the Au/Cr thin film pattern on self-alignment are studied and discussed in this paper to enable the application of the above approach in various MEMS-IC integration processes, especially for low-cost mass production of wireless sensor nodes.

Selective deposition of the silver nano-particles using patterned the hydrophobic self-assembled monolayer patterns and zero-residual nano-imprint lithography

Nucleate pool boiling heat transfer augmentation on hydrophobic self-assembly mono-layered alumina nano-porous surfaces

: Objectives are proposed concerning the molecules that form self assembled monolayers (SAMs) that can be used in colloidal powder processing and the fabrication of textured, super-hydrophobic ceramic surfaces. The first objective is to understand and control the steric forces between particles coated with hydrophilic (water loving) SAMs. This approach is new and will be exploited by industry in a variety of applications. The second is to use this knowledge to produce ceramics with micron to submicron periodic surface features using elastomer molds that are produced by a new photolithographic methods. The third objective is to produce textured surfaces with hydrophobic (water hating) SAMs to produce super-hydrophobic surfaces (wetting angles > 165 degrees) with unique features that include the biologically inspired self-cleaning properties of the lotus leaf, rain-repellent radomes with improved reliability during storms, surfaces designed to decrease the resistance to fluid flow (drug delivery in MEMS devices), and surfaces that either restrict or encourage selective liquid condensation. Progress towards these and other goals have been reported in the 15 technical reports. Many of these have been published in refereed journals.