Dynamic physiological information recovery : a sampled-data filtering framework

A.P. Dhawan, H.K. Huang, D.-S. Kim, eds. World Scientific Publishing; 2008, 868 pages, $228.00. At first glance at the cover and size of Principles and Advanced Methods in Medical Imaging and Image Analysis , a passerby might think that it is the latest Harry Potter novel; however, the gadgets and

This book places an emphasis on the basic principles and recent advances in medical imaging technologies. After an introduction, the rest of the text can be categorized into three main parts. Part 1 provides a comprehensive tutorial on the fundamentals of medical imaging modalities and image processing methodologies. Part 2 highlights the cutting-edge imaging modalities for radiography and the recent developments of information technology in biomedicine. Part 3 provides some case studies and applications in radiation therapy and computer-aided diagnosis along with a perspective on future trends in medical and molecular imaging. The book is well organized and well presented. A concise summary before each chapter highlights the most important points of the text. This book can be used as a textbook for graduate courses and as an excellent reference for radiologists, neurologists, biomedical engineers, and researchers who are interested in imaging processing and modeling.

Brain development and atrophy accompany people's life. Brain development diseases, such as autism and Alzheimer's disease, affect a large part of the population. Analyzing brain development is very important in public healthcare, and image registration is essential in medical brain image analysis. Many previous studies investigate registration accuracy by the “ground truth” dataset, marker-based similarity calculation, and expert check to find the best registration algorithms. But the evaluation of image registration technology only at the accuracy level is not comprehensive. Here, we compare the performance of three publicly available registration techniques in brain magnetic resonance imaging (MRI) analysis based on some key features widely used in previous MRI studies for classification and detection tasks. According to the analysis results, SPM12 has a stable speed and success rate, and it always works as a guiding tool for newcomers to medical image analysis. It can preserve maximum contrast information, which will facilitate studies such as tumor diagnosis. FSL is a mature and widely applicable toolkit for users, with a relatively stable success rate and good performance. It has complete functions and its function-based integrated toolbox can meet the requirements of different researchers. AFNI is a flexible and complex tool that is more suitable for professional researchers. It retains most details in medical image analysis, which makes it useful in fine-grained analysis such as volume estimation. Our study provides a new idea for comparing registration tools, where tool selection strategy mainly depends on the research task in which the selected tool can leverage its unique advantages.

The incorporation of physical information in machine learning frameworks is transforming medical image analysis (MIA). Integrating fundamental knowledge and governing physical laws not only improves analysis performance but also enhances the model’s robustness and interpretability. This work presents a systematic review of over 100 articles on the utility of PINNs dedicated to MIA (PIMIA) tasks. We propose a unified taxonomy to investigate what physics knowledge and processes are modeled, how they are represented, and the strategies to incorporate them into MIA models. We delve deep into a wide range of image analysis tasks, from imaging, generation, prediction, inverse imaging (super-resolution and reconstruction), registration, and image analysis (segmentation and classification). For each task, we thoroughly examine and present the central physics-guided operation, the region of interest (with respect to human anatomy), the corresponding imaging modality, the datasets used for model training, the deep network architectures employed, and the primary physical processes, equations, or principles utilized. Additionally, we also introduce a novel metric to compare the performance of PIMIA methods across different tasks and datasets. Based on this review, we summarize and distill our perspectives on the challenges, and highlight open research questions and directions for future research.

One major challenge in medical imaging analysis is the lack of label and annotation which usually requires medical knowledge and training. This issue is particularly serious in the brain image analysis such as the analysis of retinal vasculature, which directly reflects the vascular condition of Central Nervous System (CNS). In this paper, we present a novel semi-supervised learning algorithm to boost the performance of random forest under limited labeled data by exploiting the local structure of unlabeled data. We identify the key bottleneck of random forest to be the information gain calculation and replace it with a graph-embedded entropy which is more reliable for insufficient labeled data scenario. By properly modifying the training process of standard random forest, our algorithm significantly improves the performance while preserving the virtue of random forest such as low computational burden and robustness over over-fitting. Our method has shown a superior performance on both medical imaging analysis and machine learning benchmarks.

Medical imaging has developed into one of the most important fields within scientific imaging due to the rapid and continuing progress in computerised medical image visualisation and advances in analysis methods and computer-aided diagnosis. Several research applications are selected to illustrate the advances in image analysis algorithms and visualisation. Recent results, including previously unpublished data, are presented to illustrate the challenges and ongoing developments.

Medical image processing and analysis techniques play a significant role in diagnosing diseases. Thus, during the last decade, several noteworthy improvements in medical diagnostics have been made based on medical image processing techniques. In this article, we reviewed articles published in the most important journals and conferences that used or proposed medical image analysis techniques to diagnose diseases. Starting from four scientific databases, we applied the PRISMA technique to efficiently process and refine articles until we obtained forty research articles published in the last five years (2017–2021) aimed at answering our research questions. The medical image processing and analysis approaches were identified, examined, and discussed, including preprocessing, segmentation, feature extraction, classification, evaluation metrics, and diagnosis techniques. This article also sheds light on machine learning and deep learning approaches. We also focused on the most important medical image processing techniques used in these articles to establish the best methodologies for future approaches, discussing the most efficient ones and proposing in this way a comprehensive reference source of methods of medical image processing and analysis that can be very useful in future medical diagnosis systems.

Brain tumor classification using medical images is crucial for identification and therapy. However, brain tumors are complex and vary, making grouping them difficult. This work demonstrates a novel transfer learning method for brain tumor classification. We employ trained Convolutional Neural Networks (CNNs) models and data enrichment approaches to extract meaningful information from medical images. We want to fine-tune the models built on our dataset to uncover hierarchical patterns that distinguish tumor types. Through data enrichment, the training sample becomes more diverse and richer, making the model more generic and robust. Our team's extensive testing and research have shown that the suggested procedure can identify brain tumors. Our machine-learning approach performs better than others in terms of accuracy, sensitivity, specificity, and precision. Our technique improves brain tumor categorization and assures accurate clinical diagnosis. Automated testing systems are one way for physicians to assist patients in selecting the best course of treatment. Researchers may improve classification performance by incorporating modern imaging technology or topic-specific data. The Internet of Things, or IoT, is helping to drive the development of complex real-time data collection, processing, and sharing systems. These technological advancements have transformed medical imaging. This graphic depicts a cutting-edge transfer learning system that may be able to identify brain cancer from medical photos. This technology has the potential to enhance data collection and processing via the Internet of Things. Data augmentation and pre-trained convolutional neural networks may help to extract interpretable medical images. The Internet of Things improved the model's flexibility, resilience, and utility. We achieved this by expanding the training data set. Rapid categorization advancements have made clinical diagnosis more efficient. Classification, deep learning, medical imaging, machine learning, transfer learning, tumor detection, and image analysis all relate to this topic.

Medical image analysis plays a pivotal role in modern healthcare, aiding clinicians in accurate diagnosis and treatment planning. However, the complexity and diversity of medical images pose significant challenges for traditional image processing methods. Existing methods often struggle to precisely delineate structures in medical images, leading to suboptimal diagnostic accuracy. The demand for automated and accurate segmentation tools in medical imaging has grown, highlighting the necessity for robust and efficient algorithms capable of handling diverse anatomical variations and pathologies. While CNNs have shown promise in image analysis, their application to medical images requires customization to accommodate unique challenges. The literature lacks comprehensive studies that bridge the gap between general-purpose CNNs and the specific demands of medical image segmentation, especially concerning the diverse and intricate structures present in medical imagery. This study addresses the need for advanced techniques by leveraging Convolutional Neural Networks (CNNs) for semantic segmentation in medical image analysis. Our approach involves the design and implementation of a specialized CNN architecture tailored to the nuances of medical image data. We employ state-of-the-art techniques for data preprocessing, model training, and validation. The model is trained on a diverse dataset encompassing various medical imaging modalities, ensuring its adaptability and generalizability. The proposed CNN-based semantic segmentation model demonstrates superior performance in accurately delineating anatomical structures compared to traditional methods. Evaluation metrics, including Dice coefficient and sensitivity, indicate the model efficacy in achieving precise segmentation. The results underscore the potential of CNNs in advancing medical image analysis for improved clinical outcomes.

Organ-on-a-chip (OOC) is a new type of biochip technology. Various types of OOC systems have been developed rapidly in the past decade and found important applications in drug screening and precision medicine. However, due to the complexity in the structure of both the chip-body itself and the engineered-tissue inside, the imaging and analysis of OOC have still been a big challenge for biomedical researchers. Considering that medical imaging is moving towards higher spatial and temporal resolution and has more applications in tissue engineering, this paper aims to review medical imaging methods, including CT, micro-CT, MRI, small animal MRI, and OCT, and introduces the application of 3D printing in tissue engineering and OOC in which medical imaging plays an important role. The achievements of medical imaging assisted tissue engineering are reviewed, and the potential applications of medical imaging in organoids and OOC are discussed. Moreover, artificial intelligence - especially deep learning - has demonstrated its excellence in the analysis of medical imaging; we will also present the application of artificial intelligence in the image analysis of 3D tissues, especially for organoids developed in novel OOC systems.

There has been a significant increase in commercial products using imaging analysis techniques to solve real-world problems in diverse fields such as manufacturing, medical imaging, document analysis, transportation and public security, etc. This has been accelerated by various factors: more advanced algorithms, the availability of cheaper sensors, and faster processors. While algorithms continue to improve in performance, a major stumbling block in translating improvements in algorithms to faster deployment of image analysis systems is the lack of characterization of limits of algorithms and how they affect total system performance. The research community has realized the need for performance analysis and there have been significant efforts in the last few years to remedy the situation. Our efforts at SCR have been on statistical modeling and characterization of modules and systems. The emphasis is on both white-box and black box methodologies to evaluate and optimize vision systems. In the first part of this paper we review the literature on performance characterization and then provide an overview of the status of research in performance characterization of image and video understanding systems. The second part of the paper is on performance evaluation of medical image segmentation algorithms. Finally, we highlight some research issues in performance analysis in medical imaging systems.

Along with the development of medical imaging technology, medical image analysis has become a crucial part of clinical diagnosis. However, traditional image analysis methods rely on manual feature extraction and expert evaluation, triggering problems such as low efficiency and lack of accuracy. Deep learning techniques, especially convolutional neural networks (CNNs), have made significant breakthroughs in medical image analysis in recent years. The aim of this paper is to study the application of deep learning in medical imaging, and explore the advantages and development potential in early disease diagnosis, image segmentation and feature extraction. This paper reviews the basic principles of deep learning and analyses the applicability of deep learning in medical imaging by combining the characteristics of medical imaging. Through systematic analysis of existing literature, this paper summarises the remarkable achievements of deep learning in processing, analysing and applying it to various medical images, such as Optical Coherence Tomography (OCT), Magnetic Resonance Imaging (MRI) and so on. It has been shown that deep learning methods can significantly improve the accuracy and efficiency of medical image processing and demonstrate performance due to traditional methods in tasks such as classification. However, how to improve the interpretability of models and the generalisability of clinical applications are still current research hotspots and challenges.

Semiautomated methods for microscopic image acquisition, image analysis, and taxonomic identification have repeatedly received attention in diatom analysis. Less well studied is the question whether and how such methods might prove useful for clarifying the delimitation of species that are difficult to separate for human taxonomists. To try to answer this question, three very similar Fragilariopsis species endemic to the Southern Ocean were targeted in this study: F. obliquecostata, F. ritscheri, and F. sublinearis. A set of 501 extended focus depth specimen images were obtained using a standardized, semiautomated microscopic procedure. Twelve diatomists independently identified these specimen images in order to reconcile taxonomic opinions and agree upon a taxonomic gold standard. Using image analyses, we then extracted morphometric features representing taxonomic characters of the target taxa. The discriminating ability of individual morphometric features was tested visually and statistically, and multivariate classification experiments were performed to test the agreement of the quantitatively defined taxa assignments with expert consensus opinion. Beyond an updated differential diagnosis of the studied taxa, our study also shows that automated imaging and image analysis procedures for diatoms are coming close to reaching a broad applicability for routine use.

The traditional approach to automated analysis of medical data is mostly based on statistical or theoretical-decision methods of pattern recognition. Using such methods, we can obtain many valuable items, e.g., tracking patients' movements, control of medical treatment, etc. In medical informatics there are still many problems not solvable by computers and reserved for human medical staff. Such problems can be solved by the development of scientific research toward machine intelligence. In this paper, we try to show how the computer can understand medical data instead of simple processing and analysis. Sometimes it may be useful to make semantic content analysis leading to automatic understanding of medical data, e.g., for intelligent help in the diagnosis process or in semantics-based searching through medical databases. This paper will present the application of the cognitive-based approach for intelligent semantic analysis, allowing describing automatically important diagnostic features of analyzed images. This approach is based on a special kind of image description language and grammar formalism. During the linguistic analysis of medical patterns, we can solve the problem of generalization of features of a selected image and obtaining semantic content description of the image. The most important part of this analysis depends on the cognitive resonance process, in which features of real images are compared with some kind of expectation taken from the knowledge base containing knowledge regarding pathological cases originating from medical practice.

This year the MOL2NET is the online host conference for IWMEDIC-04 (see details on Section I). IWMEDIC-04 is the IV International Workshop on Medical Imaging, Medical Coding, and Clinical Data Analysis of University of Coruña (UDC). The IWMEDIC-04 workshop will be held presentially at the University Hospital Complex of A Coruña (June, 20, 2016), Hospital Médico Quirúrgico San Rafael (June, 21,2016), and Faculty of Computer Sciences, UDC (June, 20-22, 2016). The chairman of this workshop is Prof. Alejandro Pazos; Ph.D., M.D., Chair and Director of Department of Computer Sciences, UDC, Coruña, Spain. The topics include, but are not limited to, Medical Imaging Processing, Medical Informatics, Medical Coding, Bioinformatics, Computer Aided Drug Desing, Data Analysis, etc. English will be the official language for online publication and presentations, as per MDPI rules, presential lectures may be in English, Spanish, or Galician.