Food and Herbals - Diseases and Symptoms Relation Extraction Method based on BERT

The escalating frequency and severity of cyber-attacks have presented formidable challenges to the safeguarding of cyberspace. Named Entity Recognition (NER) technology is utilized for the rapid identification of threat entities and their relationships within cyber threat intelligence, enabling security researchers to be promptly informed of the occurrence of cyber threats, thereby enhancing the efficiency of security defense and analysis. However, current models for identifying network threat entities and extracting relationships suffer from limitations such as the inadequate representation of textual semantic information, insufficient granularity in threat entity recognition, and errors in relationship extraction propagation. To address these issues, this article proposes a novel model for Network Threat Entity Recognition and Relationship Extraction (CtiErRe). Additionally, it redefines seven network threat entities and two types of relationships between threat entities. Specifically, first, domain knowledge is collected to build a domain knowledge graph, which is then embedded using graph convolutional networks (GCN) to enhance the feature representation of threat intelligence text. Next, the features from domain knowledge graph embedding and those generated by the bidirectional encoder representations from transformers (BERT) model are fused using the Layernorm algorithm. Finally, the fused features are processed using the GlobalPointer algorithm to generate both the threat entity type matrix and the threat entity relation type matrix, thereby enabling the identification of threat entities and their relationships. To validate our proposed model, we conducted extensive experiments, and the results demonstrate its superiority over existing models. Our model performs remarkably in threat entity recognition tasks, with accuracy and F1 scores reaching 92.13% and 93.11%, respectively. In the relationship extraction task, our model achieves accuracy and F1 scores of 91.45% and 92.45%, respectively.

Fenomena bullying di media sosial, khususnya di Twitter, telah menjadi isu yang semakin memprihatinkan dengan dampak signifikan terhadap kesehatan mental pengguna. Dalam rangka mengatasi masalah ini, deteksi otomatis tweet yang mengandung konten bullying menjadi sangat penting. Penelitian ini bertujuan untuk membandingkan performa dua model pemrosesan bahasa alami terbaru, yaitu BERT (Bidirectional Encoder Representations from Transformers) dan XLNet, dalam klasifikasi tweet yang mengandung bullying. Metodologi penelitian ini melibatkan pengumpulan dataset tweet yang telah dilabeli sebagai bullying atau non-bullying. Proses preprocessing teks dilakukan untuk membersihkan dan menyiapkan data sebelum digunakan dalam pelatihan model. Kedua model, BERT dan XLNet, dilatih dan diuji menggunakan dataset yang sama. Evaluasi performa dilakukan dengan menggunakan metrik akurasi, presisi, recall, dan F1-score. Hasil penelitian menunjukkan bahwa kedua model memiliki kemampuan yang baik dalam mengidentifikasi tweet bullying, akan tetapi XLNet menunjukkan performa yang lebih unggul dibandingkan BERT dengan tingkat akurasi sebesar 95%. Dengan nilai presisi = 100%, recall = 0,87%, dan F1-score = 0,88%. XLNet mampu menangkap konteks dan nuansa bahasa yang lebih kompleks dalam tweet, yang berkontribusi pada akurasi klasifikasi yang lebih tinggi. Penelitian ini memberikan kontribusi penting dalam bidang deteksi bullying di media sosial dengan menunjukkan bahwa penggunaan model XLNet lebih efektif dibandingkan BERT. Temuan ini dapat membantu platform seperti Twitter dalam mengidentifikasi dan mencegah konten bullying, sehingga menciptakan lingkungan online yang lebih aman bagi pengguna, serta dapat digunakan sebagai dasar untuk pengembangan sistem deteksi bullying yang lebih canggih dan efisien di masa depan. Abstract The phenomenon of bullying on social media, particularly on Twitter, has become an increasingly concerning issue with significant impacts on users' mental health. In order to address this issue, automatic detection of tweets containing bullying content is crucial. This study aims to compare the performance of two recent natural language processing models, namely BERT (Bidirectional Encoder Representations from Transformers) and XLNet, in the classification of tweets containing bullying. The research methodology involves collecting a dataset of tweets that have been labelled as bullying or non-bullying. Text preprocessing is done to clean and prepare the data before it is used in model training. Both models, BERT and XLNet, were trained and tested using the same dataset. Performance evaluation was conducted using accuracy, precision, recall, and F1-score metrics. The results show that both models have a good ability to identify bullying tweets, but XLNet shows superior performance compared to BERT with an accuracy rate of 95%. With precision = 100%, recall = 0.87%, and F1-score = 0.88%. XLNet is able to capture more complex context and language nuances in tweets, which contributes to higher classification accuracy. This research makes an important contribution to the field of bullying detection on social media by showing that the use of the XLNet model is more effective than BERT. These findings can help platforms like Twitter identify and prevent bullying content, thereby creating a safer online environment for users, and can be used as a basis for the development of more sophisticated and efficient bullying detection systems in the future.

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and analyzing what BERT has already known when solving this task, we obtain better understanding of what task-specific knowledge BERT needs the most and where it is most needed. The analysis further motivates us to take a different approach than most existing works. Instead of using prior knowledge to create a new training task for fine-tuning BERT, we directly inject knowledge into BERT's multi-head attention mechanism. This leads us to a simple yet effective approach that enjoys fast training stage as it saves the model from training on additional data or tasks other than the main task. Extensive experiments demonstrate that the proposed knowledge-enhanced BERT is able to consistently improve semantic textual matching performance over the original BERT model, and the performance benefit is most salient when training data is scarce.

Recently, people used social media to convey their emotions in the text. Text classification is required for group a text containing emotion or not and identify the type of emotion. Most of the research in emotion classification use machine learning methods. So this research offers the use of deep learning for the classification of emotions in text. One of the algorithms that is widely used for deep learning is BERT (Bidirectional Encoder Representations from Transformers). For the experiment, classification is divided into two phases, namely the first phase groups emotion or not emotion tweets, and the second phase groups emotion tweets into five types of emotions, namely happy, angry, sad, scared and surprised. The experiment uses three data scenarios, namely the commuter line, transjakarta and combination data. The BERT method was compared with the BiLSTM and LSTM methods for emotion classification. The result of this study is BERT generates the highest accuracy compared to other methods for the three data scenarios with values of 87.24%, 86.27%, and 86.99% in the first phase. Then, the next accuracy value followed by obtained BiLSTM, and the last is LSTM. In the second phase, BERT also obtained the highest accuracy values for the three data scenarios with values of 94.26%, 93.71 %, and 93.98%. Then, the evaluation using Precision, Recall and F1-Measure results that BERT provides the best overall method. In this study, BERT has good performance for emotion classification.

Information about bacteria biotopes (BB) is important for fundamental research and applications in microbiology. BB task at BioNLP-OST 2019 focuses on the extraction of locations and phenotypes of microorganisms from PubMed abstracts and full-text excerpts. The subtask BB-rel+ner aims to recognize relevant entities and extract interrelationships about BBs. The corresponding corpus owns some distinctive features (e.g. nested entities) which are challenging to deal with. Therefore, previous methods achieved low performance on entity and relation extraction and limited the mutual effect between named entity recognition and relation extraction. There is still much room for improvement. We propose a span-based model to extract entities and relations jointly from biomedical text regarding the BBs. For alleviating the problem of annotated data deficiency in domain-specific task, we employ a BERT (Bidirectional Encoder Representations from Transformers) model pre-trained on the domain-specific corpus to encode sentences. Our model considers all spans in a sentence as potential entity mentions and computes relation scores between the most confident entity spans based on representations of spans and contexts between spans. Experiments on the BB-rel+ner 2019 corpus demonstrate that our model achieves significantly better performance than the state-of-the-art method, with a reduction of 21.6% slot error rate (SER) for extracting relations. Our model is also effective in recognizing nested entities. Furthermore, the model can be applied to the CHEMPROT corpus for joint extraction of chemical-protein entities and relations, achieving state-of-the-art performance. Our source code is available at https://github.com/zmmzGitHub/SpanMB_BERT. Supplementary data are available at Bioinformatics online.

In this paper we focus on an Natural Language Inference task. Being given two sentences, we classify their relation as NEUTRAL, ENTAILMENT or CONTRADICTION. Considering the achievements of BERT (Bidirectional Encoder Representations from Transformers) in many Natural Language Processing tasks, we use BERT features to create our base model for this task. However, several questions arise: can other features improve the performance obtained with BERT? If we are able to predict the situations in which BERT will fail, can we improve the performance by providing alternative models for these situations? We test several strategies and models, as alternatives to the standalone BERT model in the possible failure situations, and we take advantage of semantic features extracted from Discourse Representation Structures.

The traditional topic-based auditing model lacks the ability of multi-object and multi-abnormal correlation auditing, which makes it impossible to solve the multi-scenario and multi-factor correlation-based auditing problem. This paper designs an intelligent power marketing audit model based on a knowledge graph. First, an entity identification and relationship extraction method for power marketing business based on NLP (natural language processing) and sequence annotation technology is proposed, and the description content is imported into the knowledge graph database; then, semantic disambiguation and knowledge are carried out by using bidirectional encoder representation from transformers (BERT). Link to build a knowledge map of business audit rules: Finally, an experimental analysis is carried out by taking the copying and receiving business with a large business volume in the marketing audit work as an example, and it is verified that the proposed model can effectively improve the information analysis ability and the audit accuracy of the audit work.

Deep learning approaches, utilizing Bidirectional Encoder Representation from Transformers (BERT) and advanced fine-tuning techniques, have achieved state-of-the-art accuracies in the domain of term extraction from texts. However, BERT presents some limitations in that it primarily captures the semantic context relative to the surrounding text without considering how relevant or central a token is to the overall document content. There has also been research on the application of sequence labeling on contextualized embeddings; however, the existing methods often rely solely on local context for extracting key phrases from texts. To address these limitations, this study proposes a centrality-weighted BERT model for key phrase extraction from text using sequence labelling (CenBERT-SEQ). The proposed CenBERT-SEQ model utilizes BERT to represent terms with various contextual embedding architectures, and introduces a centrality-weighting layer that integrates document-level context into BERT. This layer leverages document embeddings to influence the importance of each term based on its relevance to the entire document. Finally, a linear classifier layer is employed to model the dependencies between the outputs, thereby enhancing the accuracy of the CenBERT-SEQ model. The proposed CenBERT-SEQ model was evaluated against the standard BERT base-uncased model using three Computer Science article datasets, namely, SemEval-2010, WWW, and KDD. The experimental results show that, although the CenBERT-SEQ and BERT-base models achieved higher and close comparable accuracy, the proposed CenBERT-SEQ model achieved higher precision, recall, and F1-score than the BERT-base model. Furthermore, a comparison of the proposed CenBERT-SEQ model to that of related studies revealed that the proposed CenBERT-SEQ model achieved a higher accuracy, precision, recall, and F1-score of 95%, 97%, 91%, and 94%, respectively, than related studies, showing the superior capabilities of the CenBERT-SEQ model in keyphrase extraction from scientific documents.

Text classification algorithms investigate the intricate relationships between words or phrases and attempt to deduce the document's interpretation. In the last few years, these algorithms have progressed tremendously. Transformer architecture and sentence encoders have proven to give superior results on natural language processing tasks. But a major limitation of these architectures is their applicability for text no longer than a few hundred words. In this paper, we explore hierarchical transfer learning approaches for long document classification. We employ pre-trained Universal Sentence Encoder (USE) and Bidirectional Encoder Representations from Transformers (BERT) in a hierarchical setup to capture better representations efficiently. Our proposed models are conceptually simple where we divide the input data into chunks and then pass this through base models of BERT and USE. Then output representation for each chunk is then propagated through a shallow neural network comprising of LSTMs or CNNs for classifying the text data. These extensions are evaluated on 6 benchmark datasets. We show that USE + CNN/LSTM performs better than its stand-alone baseline. Whereas the BERT + CNN/LSTM performs on par with its stand-alone counterpart. However, the hierarchical BERT models are still desirable as it avoids the quadratic complexity of the attention mechanism in BERT. Along with the hierarchical approaches, this work also provides a comparison of different deep learning algorithms like USE, BERT, HAN, Longformer, and BigBird for long document classification. The Longformer approach consistently performs well on most of the datasets.

Augmenting commit classification by using fine-grained source code changes and a pre-trained deep neural language model

This study aims to explore and develop tools for early identification of depression concerns among cancer patients by leveraging the novel data source of messages sent through a secure patient portal. We developed classifiers based on logistic regression (LR), support vector machines (SVMs), and 2 Bidirectional Encoder Representations from Transformers (BERT) models (original and Reddit-pretrained) on 6600 patient messages from a cancer center (2009-2022), annotated by a panel of healthcare professionals. Performance was compared using AUROC scores, and model fairness and explainability were examined. We also examined correlations between model predictions and depression diagnosis and treatment. BERT and RedditBERT attained AUROC scores of 0.88 and 0.86, respectively, compared to 0.79 for LR and 0.83 for SVM. BERT showed bigger differences in performance across sex, race, and ethnicity than RedditBERT. Patients who sent messages classified as concerning had a higher chance of receiving a depression diagnosis, a prescription for antidepressants, or a referral to the psycho-oncologist. Explanations from BERT and RedditBERT differed, with no clear preference from annotators. We show the potential of BERT and RedditBERT in identifying depression concerns in messages from cancer patients. Performance disparities across demographic groups highlight the need for careful consideration of potential biases. Further research is needed to address biases, evaluate real-world impacts, and ensure responsible integration into clinical settings. This work represents a significant methodological advancement in the early identification of depression concerns among cancer patients. Our work contributes to a route to reduce clinical burden while enhancing overall patient care, leveraging BERT-based models.

Sentence Boundary Disambiguation (SBD) is crucial for building datasets for tasks such as machine translation, syntactic analysis, and semantic analysis. Currently, most automatic sentence segmentation in Tibetan adopts the methods of rule-based and statistical learning, as well as the combination of the two, which have high requirements on the corpus and the linguistic foundation of the researchers and are more costly to annotate manually. In this study, we explore Tibetan SBD using deep learning technology. Initially, we analyze Tibetan characteristics and various subword techniques, selecting Byte Pair Encoding (BPE) and Sentencepiece (SP) for text segmentation and training the Bidirectional Encoder Representations from Transformers (BERT) pre-trained language model. Secondly, we studied the Tibetan SBD based on different BERT pre-trained language models, which mainly learns the ambiguity of the shad (“།”) in different positions in modern Tibetan texts and determines through the model whether the shad (“།”) in the texts has the function of segmenting sentences. Meanwhile, this study introduces four models, BERT-CNN, BERT-RNN, BERT-RCNN, and BERT-DPCNN, based on the BERT model for performance comparison. Finally, to verify the performance of the pre-trained language models on the SBD task, this study conducts SBD experiments on both the publicly available Tibetan pre-trained language model TiBERT and the multilingual pre-trained language model (Multi-BERT). The experimental results show that the F1 score of the BERT (BPE) model trained in this study reaches 95.32% on 465,669 Tibetan sentences, nearly five percentage points higher than BERT (SP) and Multi-BERT. The SBD method based on pre-trained language models in this study lays the foundation for establishing datasets for the later tasks of Tibetan pre-training, summary extraction, and machine translation.

In the rapidly evolving Internet of Things (IoT) landscape, accurate indoor positioning is increasingly vital. The proposed algorithm synergizes an ultrawideband (UWB) sensor with an inertial measurement unit (IMU) and artificial intelligence to obtain precise positioning in nonline-of-sight (NLOS) scenarios. In the proposed UWB module, a large language model (LLM) such as bidirectional encoder representations from transformers (BERT) algorithm is designed to utilize the channel impulse response (CIR) for effective NLOS identification and UWB ranging trustworthiness evaluation. Concurrently, the IMU module is also designed with BERT to recognize various pedestrian activity states, thereby optimizing positioning. BERT’s self-attention mechanism and deep learning (DL) bidirectional training efficiently extract essential features from sequential data, capturing both local and global information. The integration of both UWB and IMU through a proposed tightly coupled algorithm significantly boosts positioning performance. Experimental campaigns demonstrate an average NLOS identification accuracy, line-of-sight (LOS), and <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">${F}2$ </tex-math></inline-formula> of 98.8%, 99.4%, and 0.9926, respectively. These performances surpass the state-of-the-art least-squares support vector machine (LS-SVM), convolutional neural network (CNN), and CNN with long short-term memory (CNN-LSTM) up to 17.66% in NLOS identification. In terms of pedestrian activity recognition using BERT, the BERT algorithm achieves a precision (recall) of 99.3% (99.4%), notably outperforming the CNN and CNN-LSTM by 17.9% (16.2%) and 11.9% (10.9%), respectively. Finally, the UWB-IMU algorithm significantly enhances positioning accuracy by 80.5%, outperforming Kalman, LSTM-EKF, and particle filter (PF) methods by 68.1%, 48.3%, and 45.0%, respectively. The proposed approach presents a robust solution for indoor positioning for IoT applications, particularly in challenging NLOS environments.

Bidirectional Encoder Representations from Transformers (BERT) and BERT-based approaches are the current state-of-the-art in many natural language processing (NLP) tasks; however, their application to document classification on long clinical texts is limited. In this work, we introduce four methods to scale BERT, which by default can only handle input sequences up to approximately 400 words long, to perform document classification on clinical texts several thousand words long. We compare these methods against two much simpler architectures - a word-level convolutional neural network and a hierarchical self-attention network - and show that BERT often cannot beat these simpler baselines when classifying MIMIC-III discharge summaries and SEER cancer pathology reports. In our analysis, we show that two key components of BERT - pretraining and WordPiece tokenization - may actually be inhibiting BERT's performance on clinical text classification tasks where the input document is several thousand words long and where correctly identifying labels may depend more on identifying a few key words or phrases rather than understanding the contextual meaning of sequences of text.

The omnipresence of smartphones helps people to declare an emergency in realtime. In times of crisis, Twitter has become a big communication platform. As a result, more organizations are interested in tracking Twitter programmatically. Although governments and emergency management agencies work together through their respective national system for response to disasters, the sentiments of the people affected during and after the catastrophe decide the effectiveness of the disaster response and the recovery process. In recent years, sentiment analysis via Twitter-based machine learning has become a common subject. However, the detection of such tweets was often difficult due to the tweets’ language structure’s uncertainty. Thus, it is not always apparent if the words of a person announce a catastrophe. BERT (Bidirectional Encoder Representations by Transformers) is a profound learning model developed by Google. Since Google opened it, several scientists and companies have embraced it and have applied it to many text classification tasks. Therefore, we use BERT in this paper to some dataset disaster tweets. This research will help rescue and emergency responders establish effective knowledge management techniques for a rapidly evolving disaster environment.