Fractional paradigms in quantum chemistry

A comparative analysis on the performance of Kohn-Sham density functional theory (KS-DFT) and Hartree-Fock (HF) methods to obtain reliable energy and electronic properties has been performed in this study using a simple test case. It is crucial to re-emphasize the key differences between these methods to address common conceptual difficulties that occur among freshmen studying basic computational chemistry. The results suggested that the eigenvalue theorem in determining ionization potential could be well implemented in the HF but not in the KS-DFT method. The total energy difference between ionized and non-ionized species was an appropriate procedure to calculate the first ionization potential within the KS-DFT method. The HOMO-LUMO gap in the HF was larger than the gaps obtained from the KS-DFT method. Among all of the performed calculation methods, the B3LYP hybrid functional provided better total energy where the eigenvalues were located between the HF and the LDA/GGA functionals.

By examining the natural orbital occupation numbers, it was discovered that unrestricted Møller–Plesset perturbation theory (MP2) can violate N-representability by having natural occupation numbers greater than 2 or less than 0, even though the energy appears well behaved. Analytically, this problem stems from the fact that the MP2 effective one-particle density matrix is dependent on the inverse of the orbital hessian matrix (A′). When a molecular system goes through the point where spin-restricted orbitals become unstable to unrestriction, one of the eigenvalues of the A′ matrix will become 0, making it a singular matrix, thereby causing problems in the relaxed one-particle density matrix and discontinuities in the first order properties such as nuclear forces and dipole moments. Since the new ‘double-hybrid’ density functionals also involve a second-order perturbation expression for correlation using Kohn–Sham orbitals, these functionals also exhibit similar issues near the unrestriction point. The unphysical orbital occupations can be eliminated and the first derivative discontinuities removed by optimizing orbitals with inclusion of the second order correlation energy. Connections to the second derivative discontinuities in Hartree–Fock and Kohn–Sham density functional theory are also discussed.

We present a quasienergy-based formulation of damped response theory where a common effective lifetime parameter has been introduced for all excited states in terms of complex excitation energies. The introduction of finite excited state lifetimes leads to a set of (complex) damped response equations, which have the same form to all orders in the perturbation. An algorithm is presented for solving the damped response equations in Hartree-Fock theory and Kohn-Sham density functional theory. The use of the quasienergy formulation allows us to obtain directly the computationally simplest expressions for damped response functions by applying a set of response parameter elimination rules, which minimize the total number of damped response equations to be solved. In standard response theory broadened absorption spectra are obtained by ad hoc superimposing lineshape functions onto the absorption stick spectra, whereas an empirical lineshape function common to all excitations is an integrated part of damped response theory. By superimposing the lineshape functions inherent in damped response theory onto the stick spectra of standard response theory, we show that the absorption spectra obtained in standard and damped response theory calculations are identical. We demonstrate that damped response theory may be applied to obtain absorption spectra in all frequency ranges, also those that are not readily addressed using standard response theory. This makes damped response theory an effective tool, e.g., for determining absorption spectra for large molecules, where the density of the excited states may be very high, and where standard response theory therefore is not applicable in practice. A thorough comparison is given between our formulation of damped response theory and the formulation by Norman et al. [J. Chem. Phys. 123, 194103 (2005)].

SQDFT: Spectral Quadrature method for large-scale parallel [formula omitted] Kohn–Sham calculations at high temperature

A simple and completely general representation of the exact exchange-correlation functional of density-functional theory is derived from the universal Lieb-Oxford bound, which holds for any Coulomb-interacting system. This representation leads to an alternative point of view on popular hybrid functionals, providing a rationale for why they work and how they can be constructed. A similar representation of the exact correlation functional allows to construct fully nonempirical hyper-generalized-gradient approximations (HGGAs), radically departing from established paradigms of functional construction. Numerical tests of these HGGAs for atomic and molecular correlation energies and molecular atomization energies show that even simple HGGAs match or outperform state-of-the-art correlation functionals currently used in solid-state physics and quantum chemistry.

We explore a new formalism to study the nonlinear electronic density response based on Kohn–Sham density functional theory (KS-DFT) at partially and strongly quantum degenerate regimes. It is demonstrated that the KS-DFT calculations are able to accurately reproduce the available path integral Monte Carlo simulation results at temperatures relevant for warm dense matter research. The existing analytical results for the quadratic and cubic response functions are rigorously tested. It is demonstrated that the analytical results for the quadratic response function closely agree with the KS-DFT data. Furthermore, the performed analysis reveals that currently available analytical formulas for the cubic response function are not able to describe simulation results, neither qualitatively nor quantitatively, at small wavenumbers q < 2qF, with qF being the Fermi wavenumber. The results show that KS-DFT can be used to describe warm dense matter that is strongly perturbed by an external field with remarkable accuracy. Furthermore, it is demonstrated that KS-DFT constitutes a valuable tool to guide the development of the nonlinear response theory of correlated quantum electrons from ambient to extreme conditions. This opens up new avenues to study nonlinear effects in a gamut of different contexts at conditions that cannot be accessed with previously used path integral Monte Carlo methods.

The commutator direct inversion of the iterative subspace (commutator DIIS or C-DIIS) method developed by Pulay is an efficient and the most widely used scheme in quantum chemistry to accelerate the convergence of self-consistent field (SCF) iterations in Hartree-Fock theory and Kohn-Sham density functional theory. The C-DIIS method requires the explicit storage of the density matrix, the Fock matrix, and the commutator matrix. Hence, the method can only be used for systems with a relatively small basis set, such as the Gaussian basis set. We develop a new method that enables the C-DIIS method to be efficiently employed in electronic structure calculations with a large basis set such as planewaves for the first time. The key ingredient is the projection of both the density matrix and the commutator matrix to an auxiliary matrix called the gauge-fixing matrix. The resulting projected commutator-DIIS method (PC-DIIS) only operates on matrices of the same dimension as that consists of Kohn-Sham orbitals. The cost of the method is comparable to that of standard charge mixing schemes used in large basis set calculations. The PC-DIIS method is gauge-invariant, which guarantees that its performance is invariant with respect to any unitary transformation of the Kohn-Sham orbitals. We demonstrate that the PC-DIIS method can be viewed as an extension of an iterative eigensolver for nonlinear problems. We use the PC-DIIS method for accelerating Kohn-Sham density functional theory calculations with hybrid exchange-correlation functionals, and demonstrate its superior performance compared to the commonly used nested two-level SCF iteration procedure. Furthermore, we demonstrate that in the context of ab initio molecular dynamics (MD) simulation with hybrid functionals one can extrapolate the gauge-fixing matrix to achieve the goal of extrapolating the entire density matrix implicitly along the MD trajectory. Numerical results indicate that the new method significantly reduces the number of SCF iterations per MD step, compared to the commonly used strategy of extrapolating the electron density.

The accurate description of reaction barrier heights is challenging for quantum mechanical methods due to the need for a balanced treatment of dynamic and static correlation energies because their importance varies during the course of a chemical reaction. While some regions of potential energy surfaces are well-described by a single-reference wave function or by Kohn-Sham density functional theory, in other cases a multireference treatment is needed. For systems with many active electrons, most accurate multireference methods have prohibitive computational scalings with system size. Multiconfiguration pair-density functional theory, MC-PDFT, is a more affordable multireference approach that computes the total electron correlation energy in a single step by using the multiconfiguration kinetic energy, density, and on-top pair density and an on-top density functional. In this work, we apply MC-PDFT to a benchmark database (DBH24/18) of 24 diverse reaction barrier heights. We explore the role of active space and basis set selection on the performance of MC-PDFT. We find that MC-PDFT is able to calculate reaction barrier heights with a similar accuracy to complete active space second order perturbation theory, CASPT2, but at a lower computational cost, and we find that MC-PDFT is less dependent on basis set selection than CASPT2.

The exchange-correlation energy in Kohn-Sham density functional theory is expressed as a functional of the electronic density and the Kohn-Sham orbitals. An alternative to Kohn-Sham theory is to express the energy as a functional of the reduced first-order density matrix or equivalently the natural orbitals. In the former approach the unknown part of the functional contains both a kinetic and a potential contribution whereas in the latter approach it contains only a potential energy and consequently has simpler scaling properties. We present an approximate, simple and parameter-free functional of the natural orbitals, based solely on scaling arguments and the near satisfaction of a sum rule. Our tests on atoms show that it yields on average more accurate energies and charge densities than the Hartree Fock method, the local density approximation and the generalized gradient approximations.

Approximate functionals in Kohn-Sham density functional theory (KS-DFT) and reduced density matrix functional theory (RDMFT) have advantages in dealing with dynamic correlation and strong correlation, respectively; their combination can benefit from complementarity while suffering from the problem of correlation double-counting. Herein, a short-range corrected reduced density matrix (1-RDM) functional is developed to take advantage of the functionals in KS-DFT and RDMFT without double-counting. The resulting functional, denoted as ωP22, outperforms other 1-RDM functionals for the tests of thermochemistry, nonbonded interactions, and bond dissociation energy. In particular, ωP22 shows much less systematic error for systems involving fractional spins, and it can properly predict the energies at both equilibrium and dissociated distances for different single and multiple bonds, which cannot be achieved by commonly used KS-DFT and RDMFT functionals. Therefore, ωP22 is demonstrated effective in balance handling dynamic and strong correlation, and the advances in this work would create new possibilities for the development and application of approximate functionals.

KSSOLV (Kohn-Sham Solver) is a MATLAB (Matrix Laboratory) tool-box for solving the Kohn-Sham density functional theory (KS-DFT) with the plane-wave basis set. In the KS-DFT calculations, the most expensive part is commonly the diagonalization of Kohn-Sham Hamiltonian in the self-consistent field (SCF) scheme. To enable a personal computer to perform medium-sized KS-DFT calculations that contain hundreds of atoms, we present a hybrid CPU-GPU implementation to accelerate the iterative diagonalization algorithms implemented in KSSOLV by using the MATLAB built-in Parallel Computing Toolbox. We compare the performance of KSSOLV-GPU on three types of GPU, including RTX3090, V100, and A100, with conventional CPU implementation of KSSOLV respectively and numerical results demonstrate that hybrid CPU-GPU implementation can achieve a speedup of about 10 times compared with sequential CPU calculations for bulk silicon systems containing up to 128 atoms.

Long‐range correction for exchange functionals in Kohn–Sham density functional theory and its applicability are reviewed. Long‐range correction simply supplements the long‐range exchange effect in exchange functionals by replacing the Hartree–Fock exchange integral with the long‐range part of exchange functionals. Nevertheless, this correction has solved many problems in Kohn–Sham calculations. Using this correction, valence occupied and unoccupied orbital energies are quantitatively reproduced in a comprehensive manner for the first time. Long‐range correction has also solved the underestimations of charge transfer excitation energies and oscillator strengths in time‐dependent Kohn–Sham calculations and has clearly improved poor optical response properties such as hyperpolarizability in coupled‐perturbed Kohn–Sham and finite‐field calculations. Moreover, this correction has drastically improved the reproducibility of van der Waals bonds by simply combining with conventional van der Waals calculation methods. We, therefore, believe that the long‐range correction clearly extends the applicability of the Kohn–Sham method in future quantum chemistry calculations.This article is categorized under: Electronic Structure Theory &gt; Density Functional Theory

Developing a computational method that is both affordable and accurate for transition-metal chemistry is a major challenge. The bond dissociation energies and the potential energy curves are two important targets for theoretical prediction. Here, we investigate the performance of multiconfiguration pair-density functional theory (MC-PDFT) based on wave functions calculated by the complete-active-space (CAS) and generalized active space (GAS) self-consistent-field (SCF) methods for three transition-metal diatomics (TiC, TiSi, and WCl) for which accurate bond energies are available from recent experiments. We compare the results to those obtained by CAS second-order perturbation theory (CASPT2) and Kohn-Sham DFT (KS-DFT). We use six systematic methods to choose the active spaces: (1) we put the bonding orbitals, antibonding orbitals, and singly occupied nonbonding orbitals into the active space in the first method; (2) we also put s and p valence orbitals into the active space; we tried two levels of correlated participating orbitals (CPO) active spaces: (3) nominal CPO (nom-CPO) and (4) extended CPO (ext-CPO); and we used (5) the separated-pair (SP) approximation and (6) a new method presented here called extended separate pairs (ESP) approximation to divide the nom-CPO active space into subspaces. Schemes 1-4 are carried out within the CAS framework, and schemes 5 and 6 are carried out in the GAS framework to eliminate deadwood configurations. For TiC and TiSi, we used all six kinds of active spaces. For WCl, we used three active spaces (nom-CPO, SP, and ESP). We found that MC-PDFT performs better than both CASPT2 and KS-DFT. We also found that the SP (for TiSi) and ESP (for TiC and WCl) approximations are particularly appealing because they make the potential curves smoother and significantly decrease the computational cost of CASSCF calculations. Furthermore, ESP-PDFT can be as accurate as CAS-PDFT.

A theoretically correct breakdown of the molecular wave function into Hartree-Fock and electron correlation components leads to the identification of four parameter problems important in approximate molecular orbital theory. The effects of the intramolecular environment on isolated atom optimized atomic orbitals, the deviation of simple basis atomic orbitals from true Hartree-Fock atomic orbitals, differences made in transforming to a basis of orthogonal atomic orbitals, and the estimation of the molecular electron correlation energy are considered. Order-of-magnitude corrections are suggested for each of these problems. Comparative NDDO all electron calculations on the carbon monoxide molecule illustrate the improved results obtained. Additional information on the performance of methods more approximate than the NDDO all electron one indicates that quantitatively they leave much to be desired.

The term biological systems may be used in reference to a wide class of polyatomic systems. They can be defined as minimal functional units which perform specific biological functions: enzymatic reactions, transport across membranes, or photosynthesis. At present, such systems as a whole are not amenable to quantum-chemistry studies because of their large size. The smallest enzymes are built of few thousands of atoms (e.g., lysozyme consists of 129 amino-acid subunits), the smallest nucleic acids are of similar size (e.g., t-RNA molecules consist of about 80 nucleotide subunits), whereas biological membranes are even larger and include different biological macromolecules embedded in a phospholipide medium. On the other hand, a common-sense definition of the term biological systems refers to any chemical molecule or molecular complex which is involved in biological or biochemical processes. The latter definition, which will be used throughout this review, covers not only complete functional units performing biological functions but also fragments of such units. Theoretical studies have provided data on properties of such fragments and have helped understanding of the biological processes at the molecular level. Depending upon the size of such fragments, they can be studied by means of various quantum-chemical methods. Molecular systems of up to a few thousands of atoms can be studied using semi-empirical methods. For the Hartree-Fock or Kohn-Sham density functional theory (DFT) calculations, the current size limit is a few hundreds of atoms. (Throughout the text, Hartree-Fock refers to ab initio Self-Consistent Field calculations using the approximation of linear combination of atomic orbitals.) When the desired accuracy requires the calculation of electron correlation at the ab initio level, only systems containing no more than few tens of atoms can be treated. Therefore, a theoretician aiming at the elucidation of biological processes by quantum-mechanical calculations faces two crucial issues. The first one is the selection of a fragment for modeling at the quantum-mechanical level. The second one is the assessment of the effects associated with parts of the system which cannot be modeled at the quantum-mechanical level. In this review, the DFT studies of biological systems are divided into two groups corresponding to different ways of addressing the second aforementioned issue.