Global terrestrial nitrogen fixation and its modification by agriculture.

Biological nitrogen fixation is the main source of new nitrogen into natural terrestrial ecosystems and consequently in the nitrogen cycle in many earth system models. Representation of biological nitrogen fixation varies, and because of the tight coupling between the carbon and nitrogen cycles, previous studies have shown this affects net primary productivity. Here we present the first assessment of the performance of biological nitrogen fixation in models contributing to CMIP6 compared to observed and observation-constrained estimates of biological nitrogen fixation. We find that 9/10 models represent global total biological nitrogen fixation within the uncertainty of recent global estimates. However, 6/10 models overestimate the amount of fixation in the tropics, and therefore the extent of the latitudinal gradient in the global distribution. For the SSP3-7.0 scenario of future climate change, models project increases in fixation over the 21st century of up to 80 %. However, while the historical range of biological nitrogen fixation amongst models is large (up to 140 kg ha−1 yr−1 at the grid cell level and 43–208 TgN yr−1 globally) this does not have explanatory power for variations in net primary productivity or the coupled nitrogen-carbon cycle. Models with shared structures can have significant variations in both biological nitrogen fixation and other parts of the nitrogen cycle without differing in their net primary productivity. This points to systematic challenges in carbon-nitrogen model structures.

It is well documented that phosphorus (P) input stimulates biological nitrogen (N) fixation (BNF) in tropical forests with non-legume trees. However, in tropical legume forests with soil N enrichment and P deficiency, the effects of P availability and its combination with N on BNF remain poorly understood. In this study, we measured BNF rate in different compartments, i.e., bulk soil, forest floor, rhizosphere, and nodules, in two tropical plantations with legume trees Acacia auriculiformis (AA) versus non-legume trees Eucalyptus urophylla, (EU) in southern China after 4 years of P addition and combined N and P additions. The objective was to investigate how P addition and its combination with N addition regulate BNF in a tropical legume plantation, and to compare the effects with those in a non-legume plantation. Our results showed that total BNF rates were significantly higher in the P-addition plots than in the control plots by 27.4 ± 4.3 and 23.3 ± 1.7 % in the EU and AA plantations, respectively. Total BNF rates were significantly higher in the NP-addition plots than in the control plots by 27.7 ± 5.0 and 8.5 ± 1.4 % in the EU and AA plantations, respectively, which contrasted to our previous result that total BNF rates were significantly lower in N-addition plots than in the control plots in the AA plantation. These findings suggest that P input can stimulate BNF in tropical forest biome dominated by legume trees, even in consideration of elevated atmospheric N deposition. Thus, our study revealed the important role of P in regulating biological N input, which should be taken into account in the modeling of biogeochemical cycles in the future.

Core Ideas Cowpea nodule biomass was more sensitive to water stress compared to shoot biomass. Rainfed conditions resulted in 57% decrease in N2 fixation compared to well‐watered. Inter‐seasonal variability in rainfall accounted for 58% difference in cowpea grain yield. Future increase in drought and heat stress will challenge legume productivity in many regions. In Sub‐Saharan Africa, legumes are earmarked as an integral component in building resilience to climate change and food security in smallholder farming systems. Hence, the need for continuous screening of drought tolerant legume genotypes for sustained productivity. A 2‐yr field study was conducted to identify superior cowpea genotypes with high biological nitrogen fixation (BNF), grain yield, and drought tolerance. Four genotypes, selected from a pool of 91, were grown under four moisture levels ranging from well‐watered (WW) to severe water stress (SS). Grain yield, shoot biomass, nodule mass, and BNF were determined. There was significant effect of water stress on the measured parameters. Nodule mass and BNF were more sensitive to water stress compared to shoot biomass across genotypes. Water stress resulted in 80% reduction in nodule biomass between WW and SS. As a result, cowpea genotypes grown under SS conditions fixed 57% less N2 compared to those under WW. The study also revealed significant genotypic variation in shoot biomass, grain yield, and BNF. Genotype TVu4607 was low in grain yield but performed better for BNF (71 kg N ha−1 under WW and 30 kg N ha−1 under SS). Genotype IT00K‐1263, proved to be our superior genotype with a good balance of biomass, BNF and grain yield. Our findings suggest that future water stress may significantly affect cowpea productivity, mostly its capacity to fix nitrogen. Consequently, adaptation strategies to improve drought resistance in cowpea are needed, particularly improvement of BNF under water stress.

Biological nitrogen fixation is an important source of new nitrogen, influencing ocean fertility and carbon uptake. While recently documented in Arctic waters, its role in the Southern Ocean remains uncertain. We measured nitrogen fixation along the Western Antarctic Peninsula and at Palmer Station over two austral summer months. Rates from 15N2 assay were below conservative detection limits but detectable under less stringent detection thresholds. Continuous acetylene reduction assay provided further support. nifH gene sequencing identified Gammaproteobacteria as the dominating identified diazotrophs, while Epsilonproteobacteria contributed disproportionally to nifH expression when putative nitrogen fixation was highest. Combined with environmental observations, we hypothesize that vertical water mixing resuspended sediments into the water column and contributed to the limited nitrogen fixation. Given the sporadic and low rates, further research is needed to determine whether nitrogen fixation plays a minor role or represents an overlooked process with biogeochemical significance in the Southern Ocean.

Human activities have clearly caused dramatic alterations of the terrestrial nitrogen cycle, and analyses of the extent and effects of such changes are now common in the scientific literature. However, any attempt to evaluate N cycling processes within ecosystems, as well as anthropogenic influences on the N cycle, requires an understanding of the magnitude of inputs via biological nitrogen fixation (BNF). Although there have been many studies addressing the microbiology, physiology, and magnitude of N fixation at local scales, there are very few estimates of BNF over large scales. We utilized >100 preexisting published estimates of BNF to generate biome‐ and global‐level estimates of biological N fixation. We also used net primary productivity (NPP) and evapotranspiration (ET) estimates from the Century terrestrial ecosystem model to examine global relationships between these variables and BNF as well as to compare observed and Century‐modeled BNF. Our data‐based estimates showed a strong positive relationship between ecosystem ET and BNF, and our analyses suggest that while the model's simple relationships for BNF predict broad scale patterns, they do not capture much of the variability or magnitude of published rates. Patterns of BNF were also similar to patterns of ecosystem NPP. Our “best estimate” of potential nitrogen fixation by natural ecosystems is ∼195 Tg N yr−1, with a range of 100–290 Tg N yr−1. Although these estimates do not account for the decrease in natural N fixation due to cultivation, this would not dramatically alter our estimate, as the greatest reductions in area have occurred in systems characterized by relatively low rates of N fixation (e.g., grasslands). Although our estimate of BNF in natural ecosystems is similar to previously published estimates of terrestrial BNF, we believe that this study provides a more documented, constrained estimate of this important flux.

Biological nitrogen fixation (BNF) is the largest natural source of exogenous nitrogen (N) to unmanaged ecosystems and also the primary baseline against which anthropogenic changes to the N cycle are measured. Rates of BNF in tropical rainforest are thought to be among the highest on Earth, but they are notoriously difficult to quantify and are based on little empirical data. We adapted a sampling strategy from community ecology to generate spatial estimates of symbiotic and free-living BNF in secondary and primary forest sites that span a typical range of tropical forest legume abundance. Although total BNF was higher in secondary than primary forest, overall rates were roughly five times lower than previous estimates for the tropical forest biome. We found strong correlations between symbiotic BNF and legume abundance, but we also show that spatially free-living BNF often exceeds symbiotic inputs. Our results suggest that BNF in tropical forest has been overestimated, and our data are consistent with a recent top-down estimate of global BNF that implied but did not measure low tropical BNF rates. Finally, comparing tropical BNF within the historical area of tropical rainforest with current anthropogenic N inputs indicates that humans have already at least doubled reactive N inputs to the tropical forest biome, a far greater change than previously thought. Because N inputs are increasing faster in the tropics than anywhere on Earth, both the proportion and the effects of human N enrichment are likely to grow in the future.

Light-driven nitrogen fixation catalyzed by nanomaterials: link between PNF and BNF.

Abstract. Biological nitrogen fixation (BNF) by symbiotic and free-living bacteria is an important source of plant-available nitrogen (N) in terrestrial ecosystems supporting carbon (C) sequestration and food production worldwide. Dynamic global vegetation models (DGVMs) are frequently used to assess the N and C cycles under dynamic land use and climate. BNF plays an important role in the components of both these cycles, making a robust representation of the processes and variables that BNF depends on important to reduce uncertainty within the C and N cycles and improve the ability of DGVMs to project future ecosystem productivity, vegetation patterns or the land C sink. Still, BNF is often modelled as a function of net primary productivity or evapotranspiration, and the actual drivers are neglected. We implemented plant-functional-type-specific limitations for BNF dependent on soil temperature and soil water content, as well as a cost of BNF, in the Lund–Potsdam–Jena managed Land (LPJmL) DGVM and compared the new (“C-costly”) against the previous (“Original”) approach and data from the scientific literature. For our comparison, we simulated a potential natural vegetation scenario and one including anthropogenic land use for the period from 1901 to 2016 for which we evaluate BNF and legume crop yields. Our results show stronger agreement with BNF observations for the C-costly than the Original approach for natural vegetation and agricultural areas. The C-costly approach reduced the overestimation of BNF, especially in hot spots of legume crop production. Despite the reduced BNF in the C-costly approach, yields of legume crops were similar to the Original approach. While the net C and N balances were similar between the two approaches, the reduced BNF in the C-costly approach results in a slight underestimation of N losses from leaching, emissions and harvest compared to the values in the literature, supporting further investigation of the underlying reasons, such as processes represented in DGVMs and scenario assumptions. While we see the potential for further model development, for example, to separate symbiotic and free-living BNF, the C-costly approach is a major improvement over the simple Original approach because of the separate representation of important drivers and limiting factors of BNF, and the C-costly approach also improves the ability of LPJmL to project future C and N cycle dynamics.

AME Aquatic Microbial Ecology Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials AME 72:33-46 (2014) - DOI: https://doi.org/10.3354/ame01683 Differing responses of marine N2 fixers to warming and consequences for future diazotroph community structure Fei-Xue Fu*, Elizabeth Yu, Nathan S. Garcia, Jasmine Gale, Yunsheng Luo, Eric A. Webb, David A. Hutchins Department of Biological Sciences, The University of Southern California, 3616 Trousdale Parkway, Los Angeles, California 90089, USA *Corresponding author: ffu@usc.edu ABSTRACT: The globally distributed colonial cyanobacterium Trichodesmium and unicellular diazotrophs including Crocosphaera together carry out the majority of marine biological nitrogen (N2) fixation. Future sea surface warming is predicted to influence their abundance and distribution, but temperature reaction norms have been determined for very few representatives of each genus. We compared thermal responses within and between the 2 genera Trichodesmium and Crocosphaera by measuring reaction norms for growth, N2 fixation, carbon fixation, and elemental ratios in 7 strains from a global culture collection. Temperature reaction norms of Trichodesmium and Crocosphaera were remarkably similar for all isolates within each genus, regardless of their geographic origin. Thermal limits of Trichodesmium and Crocosphaera ranged from 18 to 32°C and 24 to 32°C, and optimum growth temperatures were ~26 and ~30°C, respectively. The highest cellular ratios of nitrogen to phosphorus and carbon to nitrogen were found at optimum growth temperatures, and the lowest ratios near their thermal limits. In a mixed competition experiment, Trichodesmium growth rates were ~25% higher than those of Crocosphaera at 24°C, while those of Crocosphaera were ~50% higher at 28°C. Comparison of these results to current and projected seasonal temperature regimes in the subtropical Atlantic and Pacific Oceans suggests that predicted warmer temperatures may favor Crocosphaera over Trichodesmium, but that both genera may be excluded where future temperatures consistently exceed 32°C. Sea surface warming could profoundly alter the community structure and stoichiometry of marine N2-fixing cyanobacteria, thus fundamentally changing the biogeochemical cycling of this globally significant source of new nitrogen. KEY WORDS: Global change · Warming · Temperature · Nitrogen fixation · Trichodesmium · Crocosphaera Full text in pdf format PreviousNextCite this article as: Fu FX, Yu E, Garcia NS, Gale J, Luo Y, Webb EA, Hutchins DA (2014) Differing responses of marine N2 fixers to warming and consequences for future diazotroph community structure. Aquat Microb Ecol 72:33-46. https://doi.org/10.3354/ame01683 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in AME Vol. 72, No. 1. Online publication date: March 07, 2014 Print ISSN: 0948-3055; Online ISSN: 1616-1564 Copyright © 2014 Inter-Research.

Nitrogen is a building block of life. Molecular nitrogen is the relatively inert atmospheric form of this element, and it must be fixed into more biologically accessible forms in order to be used for organic processes. In total, approximately 380 teragrams of nitrogen per year are fixed by atmospheric, biological, and industrial nitrogen fixation processes. Whereas the Haber–Bosch process currently accounts for the majority of the reduced nitrogen that is used agriculturally with the world’s increasing dependence on agriculture to feed its population, the use of reduced nitrogen derived from energy provided by fossil fuels in not likely to be sustainable. Biological nitrogen fixation is mediated by diazotrophic microorganisms that are capable of fixing atmospheric nitrogen using the enzyme nitrogenase. Much of this is carried out as a symbiotic association between plants and some diazotrophic bacteria. The study of symbiotic nitrogen fixation is an area of research that spans both microbiology and plant biology. Since this is an area that has had a great deal of renewed interest, this chapter reviews what is currently understood about the process of symbiotic nitrogen fixation at the molecular and physiological level from both the plant and bacterial perspective.

Currently, inorganic nitrogen fertilizer becomes a serious threat to the environment and human health. Thus, finding of alternate source of nitrogen is a viable option in assuring of sustainable agricultural system. Biological nitrogen fixation is a critical and key process in sustainable agricultural systems in tropical soils, which are frequently deficient in N and susceptible to leaching of plant nutrients. This process transforms atmospheric nitrogen to ammonia, nitrate and nitrogen dioxide. Several key abiotic and biotic factors limit legume productivity and biological nitrogen fixation in world agriculture, especially in sub-Saharan Africa. Within the soil, rhizobia frequently encounter various stresses that affect their growth, their initial steps of symbiosis and the capability of nitrogen fixation. Biotic and abiotic stresses impose a major threat to agriculture and symbiotic nitrogen fixation is dependent on host cultivar and rhizobia, but as well may be limited by pedoclimatic factors. The most common factors affecting biological nitrogen fixation and symbiosis activity in western parts of Ethiopia are soil acidity, quality of inoculants and low soil fertility. In most cases, the microsymbiont is the more affected partner, with plants growing on mineral N usually less sensitive to these stresses. Thus, it can be concluded that, particularly in a western part of Ethiopia, many studies should be focused on acidity related constraints on biological nitrogen fixation, screening of acid tolerant inoculants and low soil fertility improvements to enhance biological nitrogen fixation in smallholder farming system. Key words: Abiotic and biotic factors, legume, Rhizobium, symbiosis.

Biological nitrogen fixation (BNF) by canonical molybdenum and complementary vanadium and iron-only nitrogenase isoforms is the primary natural source of newly fixed nitrogen. Understanding controls on global nitrogen cycling requires knowledge of the isoform responsible for environmental BNF. The isotopic acetylene reduction assay (ISARA), which measures carbon stable isotope (13C/12C) fractionation between ethylene and acetylene in acetylene reduction assays, is one of the few methods that can quantify isoform-specific BNF fluxes. Application of classical ISARA has been challenging because environmental BNF activity is often too low to generate sufficient ethylene for isotopic analyses. Here we describe a high sensitivity method to measure ethylene δ13C by in-line coupling of ethylene preconcentration to gas chromatography-combustion-isotope ratio mass spectrometry (EPCon-GC-C-IRMS). Ethylene requirements in samples with 10% v/v acetylene are reduced from > 500 to ~ 20 ppmv (~ 2 ppmv with prior offline acetylene removal). To increase robustness by reducing calibration error, single nitrogenase-isoform Azotobacter vinelandii mutants and environmental sample assays rely on a common acetylene source for ethylene production. Application of the Low BNF activity ISARA (LISARA) method to low nitrogen-fixing activity soils, leaf litter, decayed wood, cryptogams, and termites indicates complementary BNF in most sample types, calling for additional studies of isoform-specific BNF.

Nutrient addition, fire and grass competition affects biological nitrogen fixation in Vachellia sieberiana, and associated soil respiration

Biological nitrogen fixation (BNF), a function performed by diazotrophic microbes, plays an essential role in nitrogen (N) bioavailability in terrestrial ecosystems. However, little is known about the effects of meadow degradation on soil BNF and diazotrophic communities in alpine meadows. We investigated changes in soil BNF and their potential drivers in alpine meadows along a degradation gradient on the Tibetan Plateau (non-degraded, lightly degraded, moderately degraded, and severely degraded meadows) using real-time quantitative PCR and amplicon sequencing. Soil BNF rates decreased significantly along the meadow degradation gradient with a range of 17.34–79.84 nmol C2H4 g−1 dry soil d−1 across all sites. The highest BNF rate in the non-degraded meadow was 1.5–4.6-fold higher than that in the degraded meadows. The abundance and diversity of diazotrophs measured by nifH abundance and Shannon diversity was also decreased in the degraded meadows, accompanied by decreases in plant biomass, soil moisture, and nutrient content (C, N). Soil BNF rate was correlated with plant biomass, soil nutrient content, and diazotrophic abundance (including Nostoc, Scytonema, Rhodopseudomonas, and unidentified genera within the Rhizobiales and Proteobacteria). The community composition of diazotrophs differed markedly among sites with different levels of degradation, with both autotrophic (Cyanobacteria) and heterotrophic (Proteobacteria) diazotrophs contributing significantly to BNF. The plant functional groups, particularly the sedge family, were the primary drivers of soil BNF rates via mediating soil moisture, nutrient content (dissolved organic C and N), nifH gene abundance, and diazotrophic community composition. Our results reveal the main drivers of decreased BNF during alpine meadow degradation and emphasize the importance of plant functional groups in shaping the diazotrophic community and regulating the BNF rate. This information can be applied to the restoration of degraded meadow ecosystems.

Biological nitrogen fixation (BNF) is an important nitrogen source for both N2-fixers and their neighboring plants in natural and managed ecosystems. Biological N fixation can vary considerably depending on soil conditions, yet there is a lack of knowledge on the impact of varying soils on the contribution of N from N2-fixers in mixed swards. In this study, the amount and proportion of BNF from red clover were assessed using three grassland soils. Three soil samples, Hallsworth (HH), Crediton (CN), and Halstow (HW) series, were collected from three grassland sites in Devon, UK. A pot experiment with 15N natural abundance was conducted to estimate BNF from red clover, and the proportion of N transferred from red clover to the non-N2 fixing grass in a grass-clover system. The results showed that BNF in red clover sourced from atmosphere in the HH soil was 2.92 mg N plant−1, which was significantly lower than that of the CN (6.18 mg N plant−1) and HW (8.01 mg N plant−1) soils. Nitrogen in grass sourced from BNF via belowground was 0.46 mg N plant−1 in the HH soil, which was significantly greater than that in CN and HW soils. However, proportionally there were no significant differences in the percentage N content of both red clover and grass sourced from BNF via belowground among soils, at 65%, 67%, 65% and 35%, 27%, 31% in HH, CN, and HW, respectively. Our observations indicate that the amount of BNF by red clover varies among grassland soils, as does the amount of N sourced from BNF that is transferred to neighboring plants, which is linked to biomass production. Proportionally there was no difference among soils in N sourced from BNF in both the red clover plants and transferred to neighboring plants.