Plant diseases threaten global food security, necessitatingefficient,field-deployable diagnostics. Traditional approaches, including morphologicalassessments and conventional sampling methods such as swabs or multistepDNA extraction, are often unreliable in the early stages of infectionwhen visible symptoms are absent and subsurface pathogens remain inaccessible,underscoring the need for molecular tools. Here, we present a microneedle(MN)-based diagnostic platform integrated with loop-mediated isothermalamplification (LAMP) and lateral flow assay (LFA), supported by acustom-built portable heater (LAMPbox). The MNs enable the directextraction of plant fluids and associated pathogens, offering a rapid,simple, and efficient sampling approach. In this study, two MN typeswere evaluated: poly(vinyl alcohol) (PVA) and stereolithography-printedMNs fabricated from a plant-derived resin. The 3D-printed MNs exhibitedsuperior mechanical robustness, with a displacement ratio of only3.3% compared to 24.5% for PVA MNs, and provided an ∼12% higherDNA yield than conventional swab-based methods. Integrated with theLAMPbox, this platform enabled reliable detection of Puccinia triticina with clear differentiation betweenhealthy and infected leaves. This work establishes 3D-printed MNsas mechanically robust and effective tools for pathogen sampling whiledemonstrating the feasibility of a low-cost, portable, and sustainablesystem for early plant disease diagnosis.