Machine Learning Helps to Predict Pediatric OSA Based on Clinical Features

Aim: Machine learning (ML) and deep learning (DL) predictive models have been employed widely in clinical settings. Their potential support and aid to the clinician of providing an objective measure that can be shared among different centers enables the possibility of building more robust multicentric studies. This study aimed to propose a user-friendly and low-cost tool for COVID-19 mortality prediction using both an ML and a DL approach. Method: We enrolled 2348 patients from several hospitals in the Province of Reggio Emilia. Overall, 19 clinical features were provided by the Radiology Units of Azienda USL-IRCCS of Reggio Emilia, and 5892 radiomic features were extracted from each COVID-19 patient’s high-resolution computed tomography. We built and trained two classifiers to predict COVID-19 mortality: a machine learning algorithm, or support vector machine (SVM), and a deep learning model, or feedforward neural network (FNN). In order to evaluate the impact of the different feature sets on the final performance of the classifiers, we repeated the training session three times, first using only clinical features, then employing only radiomic features, and finally combining both information. Results: We obtained similar performances for both the machine learning and deep learning algorithms, with the best area under the receiver operating characteristic (ROC) curve, or AUC, obtained exploiting both clinical and radiomic information: 0.803 for the machine learning model and 0.864 for the deep learning model. Conclusions: Our work, performed on large and heterogeneous datasets (i.e., data from different CT scanners), confirms the results obtained in the recent literature. Such algorithms have the potential to be included in a clinical practice framework since they can not only be applied to COVID-19 mortality prediction but also to other classification problems such as diabetic prediction, asthma prediction, and cancer metastases prediction. Our study proves that the lesion’s inhomogeneity depicted by radiomic features combined with clinical information is relevant for COVID-19 mortality prediction.

BACKGROUND Timely identification of local failure after Stereotactic Radiosurgery (SRS) offers the opportunity for appropriate treatment modifications that may result in improved treatment outcomes, patient survival, and quality of life. Previous studies showed that the addition of either radiomics or deep learning features to clinical features increased the accuracy of the models in predicting local control (LC) of brain metastases after SRS. To date, however, no study combined both radiomics and deep learning features together with clinical features to develop machine learning algorithms to predict LC of brain metastases. In this study, we examined whether a model trained with a combination of all these features could predict LC better than models trained with only a subset of these features. MATERIAL AND METHODS Pre-treatment brain MRIs and clinical data were collected retrospectively for 129 patients at the Gamma Knife Center of Elisabeth-TweeSteden Hospital (ETZ), Tilburg, The Netherlands. The patients were split into 103 patients for training and 26 patients for testing. The segment-based radiomics features were extracted using the radiomics feature extractor of the python radiomics package. The deep learning features were extracted using a fine-tuned 3D ResNet model and then combined with the clinical and radiomics features. A Random Forest classifier was trained with the training data set and then tested with the test data set. The performance was compared across 4 different models trained with clinical features only, clinical and radiomics features, clinical and deep learning features, and clinical, radiomics and deep learning features. RESULTS The prediction model with only clinical variables demonstrated an area under the receiver operating characteristic curve (AUC) of 0.82 and an accuracy of 75.6%. The prediction model with the combination of clinical and radiomics features demonstrated an AUC of 0.880 and an accuracy of 83.3% whereas the prediction model with the combination of clinical and deep learning features demonstrated an AUC of 0.863 and an accuracy of 78.3%. The best prediction performance was associated with the model that combined the clinical, radiomics and deep learning features with an AUC of 0.886 and 87% accuracy. CONCLUSION Machine learning models built on radiomics features and deep learning features combined with patient characteristics show potential to predict LC after SRS with high accuracy. The promising findings from this study demonstrate the potential for early prediction of SRS outcome for brain metastasis prior to treatment initiation and might offer the opportunity for appropriate treatment modifications that may result in improved treatment outcomes, patient survival, and quality of life.

BackgroundTimely prevention of major adverse cardiovascular events (MACEs) is imperative for reducing cardiovascular diseases-related mortality. Perivascular adipose tissue (PVAT), the adipose tissue surrounding coronary arteries, has attracted increased amounts of attention. Developing a model for predicting the incidence of MACE utilizing machine learning (ML) integrating clinical and PVAT features may facilitate targeted preventive interventions and improve patient outcomes.MethodsFrom January 2017 to December 2019, we analyzed a cohort of 1077 individuals who underwent coronary CT scanning at our facility. Clinical features were collected alongside imaging features, such as coronary artery calcium (CAC) scores and perivascular adipose tissue (PVAT) characteristics. Logistic regression (LR), Framingham Risk Score, and ML algorithms were employed for MACE prediction.ResultsWe screened seven critical features to improve the practicability of the model. MACE patients tended to be older, smokers, and hypertensive. Imaging biomarkers such as CAC scores and PVAT characteristics differed significantly between patients with and without a 3-year MACE risk in a population that did not exhibit disparities in laboratory results. The ensemble model, which leverages multiple ML algorithms, demonstrated superior predictive performance compared with the other models. Finally, the ensemble model was used for risk stratification prediction to explore its clinical application value.ConclusionsThe developed ensemble model effectively predicted MACE incidence based on clinical and imaging features, highlighting the potential of ML algorithms in cardiovascular risk prediction and personalized medicine. Early identification of high-risk patients may facilitate targeted preventive interventions and improve patient outcomes.

ObjectiveTo identify DNA methylation and clinical features, and to construct machine learning classifiers to assign the patients with major depressive disorder (MDD) into responders and non-responders after a 2-week treatment into responders and non-responders.MethodHan Chinese patients (291 in total) with MDD comprised the study population. Datasets contained demographic information, environment stress factors, and the methylation levels of 38 methylated sites of tryptophan hydroxylase 2 (TPH2) genes in peripheral blood samples. Recursive Feature Elimination (RFE) was employed to select features. Five classification algorithms (logistic regression, classification and regression trees, support vector machine, logitboost and random forests) were used to establish the models. Performance metrics (AUC, F-Measure, G-Mean, accuracy, sensitivity, specificity, positive predictive value and negative predictive value) were computed with 5-fold-cross-validation. Variable importance was evaluated by random forest algorithm.ResultRF with RFE outperformed the other models in our samples based on the demographic information and clinical features (AUC = 61.2%, 95%CI: 60.1-62.4%) / TPH2 CpGs features (AUC = 66.6%, 95%CI: 65.4-67.8%) / both clinical and TPH2 CpGs features (AUC = 72.9%, 95%CI: 71.8-74.0%).ConclusionThe effects of TPH2 on the early-stage antidepressant response were explored by machine learning algorithms. On the basis of the baseline depression severity and TPH2 CpG sites, machine learning approaches can enhance our ability to predict the early-stage antidepressant response. Some potentially important predictors (e.g., TPH2-10-60 (rs2129575), TPH2-2-163 (rs11178998), age of first onset, age) in early-stage treatment response could be utilized in future fundamental research, drug development and clinical practice.

Machine learning value in the diagnosis of vertebral fractures: A systematic review and meta-analysis

Machine Learning–Based Ultrasound Radiomics for Evaluating the Function of Transplanted Kidneys

Machine learning accurately predicts mortality in adult NPM1-mutant Acute Myeloid Leukemia using baseline clinical and genomic features

Diabetic retinopathy (DR) is a late microvascular complication of Diabetes Mellitus (DM) that could lead to permanent blindness in patients, without early detection. Although adequate management of DM via regular eye examination can preserve vision in in 98% of the DR cases, DR screening and diagnoses based on clinical lesion features devised by expert clinicians; are costly, time-consuming and not sufficiently accurate. This raises the requirements for Artificial Intelligent (AI) systems which can accurately detect DR automatically and thus preventing DR before affecting vision. Hence, such systems can help clinician experts in certain cases and aid ophthalmologists in rapid diagnoses. To address such requirements, several approaches have been proposed in the literature that use Machine Learning (ML) and Deep Learning (DL) techniques to develop such systems. However, these approaches ignore the highly valuable clinical lesion features that could contribute significantly to the accurate detection of DR. Therefore, in this study we introduce a framework called DR-detector that employs the Extreme Gradient Boosting (XGBoost) ML model trained via the combination of the features extracted by the pretrained convolutional neural networks commonly known as transfer learning (TL) models and the clinical retinal lesion features for accurate detection of DR. The retinal lesion features are extracted via image segmentation technique using the UNET DL model and captures exudates (EXs), microaneurysms (MAs), and hemorrhages (HEMs) that are relevant lesions for DR detection. The feature combination approach implemented in DR-detector has been applied to two common TL models in the literature namely VGG-16 and ResNet-50. We trained the DR-detector model using a training dataset comprising of 1,840 color fundus images collected from e-ophtha, retinal lesions and APTOS 2019 Kaggle datasets of which 920 images are healthy. To validate the DR-detector model, we test the model on external dataset that consists of 81 healthy images collected from High-Resolution Fundus (HRF) dataset and MESSIDOR-2 datasets and 81 images with DR signs collected from Indian Diabetic Retinopathy Image Dataset (IDRID) dataset annotated for DR by expert. The experimental results show that the DR-detector model achieves a testing accuracy of 100% in detecting DR after training it with the combination of ResNet-50 and lesion features and 99.38% accuracy after training it with the combination of VGG-16 and lesion features. More importantly, the results also show a higher contribution of specific lesion features toward the performance of the DR-detector model. For instance, using only the hemorrhages feature to train the model, our model achieves an accuracy of 99.38 in detecting DR, which is higher than the accuracy when training the model with the combination of all lesion features (89%) and equal to the accuracy when training the model with the combination of all lesions and VGG-16 features together. This highlights the possibility of using only the clinical features, such as lesions that are clinically interpretable, to build the next generation of robust artificial intelligence (AI) systems with great clinical interpretability for DR detection. The code of the DR-detector framework is available on GitHub at https://github.com/Janga-Lab/DR-detector and can be readily employed for detecting DR from retinal image datasets.

Metabolic dysfunction-associated steatotic liver disease (MASLD) is a leading cause of chronic liver disease globally. Current diagnostic methods, such as liver biopsies, are invasive and have limitations, highlighting the need for non-invasive alternatives. To investigate extracellular vesicles (EVs) as potential biomarkers for diagnosing and staging steatosis in patients with MASLD using machine learning (ML) and explainable artificial intelligence (XAI). In this single-center observational study, 798 patients with metabolic dysfunction were enrolled. Of these, 194 met the eligibility criteria, and 76 successfully completed all study procedures. Transient elastography was used for steatosis and fibrosis staging, and circulating plasma EV characteristics were analyzed through nanoparticle tracking. Twenty ML models were developed: Six to differentiate non-steatosis (S0) from steatosis (S1-S3); and fourteen to identify severe steatosis (S3). Models utilized EV features (size and concentration), clinical (advanced fibrosis and presence of type 2 diabetes mellitus), and anthropomorphic (sex, age, height, weight, body mass index) data. Their performance was assessed using receiver operating characteristic (ROC)-area under the curve (AUC), specificity, and sensitivity, while correlation and XAI analysis were also conducted. The CatBoost C1a model achieved an ROC-AUC of 0.71/0.86 (train/test) on average across ten random five-fold cross-validations, using EV features alone to distinguish S0 from S1-S3. The CatBoost C2h-21 model achieved an ROC-AUC of 0.81/1.00 (train/test) on average across ten random three-fold cross-validations, using engineered features including EVs, clinical features like diabetes and advanced fibrosis, and anthropomorphic data like body mass index and weight for identifying severe steatosis (S3). Key predictors included EV mean size and concentration. Correlation, XAI, and SHapley Additive exPlanations analysis revealed non-linear feature relationships with steatosis stages. The EV-based ML models demonstrated that the mean size and concentration of circulating plasma EVs constituted key predictors for distinguishing the absence of significant steatosis (S0) in patients with metabolic dysfunction, while the combination of EV, clinical, and anthropomorphic features improved the diagnostic accuracy for the identification of severe steatosis. The algorithmic approach using ML and XAI captured non-linear patterns between disease features and provided interpretable MASLD staging insights. However, further large multicenter studies, comparisons, and validation with histopathology and advanced imaging methods are needed.

Prediction of Renal Function 1 Year After Transplantation Using Machine Learning Methods Based on Ultrasound Radiomics Combined With Clinical and Imaging Features.

Machine and deep learning identified metabolites and clinical features associated with gallstone disease

This study aimed to develop and validate an interpretable machine learning (ML) model based on nnU-Net automated segmentation and computed tomography (CT) radiomics for preoperative risk stratification in thymic epithelial tumors (TETs). In this retrospective multicenter study, 764 patients with pathologically confirmed TETs were enrolled and divided into training, internal validation, and two external validation cohorts. An nnU-Net model was trained for automatic tumor segmentation, with performance assessed by the dice similarity coefficient (DSC). Radiomic features were extracted from the automated segmentations of venous-phase CT images, and least absolute shrinkage and selection operator (LASSO) regression was applied for feature selection. Predictive models, including radiomics-only, clinical-only, and a clinical-radiomics (combined) model, were constructed using five ML algorithms (RF, SVM, KNN, DT, and LR). Model performance was evaluated using the receiver operating characteristic (ROC) curve. Delong’s test was employed to compare these ML models and select the best-performing model as the final model. Calibration curve and decision curve analysis (DCA) were performed to assess clinical efficacy of the final model. The interpretability of the optimal model was elucidated using SHapley Additive exPlanations (SHAP). The nnU-Net segmentation model achieved excellent performance, with a DSC of 0.979 on the test cohort. Compared to the other four combined models, the RF-based combined model demonstrated superior predictive efficacy, yielding area under the curve (AUC) values of 0.941 (training), 0.884 (internal validation), 0.867 (external validation 1), and 0.872 (external validation 2). The calibration curves indicated excellent agreement between the RF-based model’s predictions and actual outcomes, and furthermore, DCA confirmed its superior net benefit over baseline strategies across a wide range of thresholds. SHAP tool identified 11 radiomic features and 3 clinical features as the most influential features, providing transparency into the model’s decision-making process. The nnU-Net framework enables accurate and efficient automatic segmentation of TETs. The proposed RF-based combined model, integrating clinical and radiomic features, provides a robust and interpretable tool for identifying the high-risk TETs, holding promise for supporting clinical decision-making towards personalized therapy.

Parkinson’s disease (PD) is one of the fastest‐growing neurodegenerative disorders, where timely diagnosis is essential for optimizing treatment. In this study, we created a radiomics–MDS‐UPDRS, a robust dataset by integrating DaTscan SPECT radiomics data with the clinical characteristics of MDS‐UPDRS collected from Parkinson’s progression markers initiative (PPMI) to monitor dopamine depletion in the striatum (caudate and putamen) and allow classification and progression analysis of PD. To construct the dataset, the striatum was segmented using a modified K‐means clustering algorithm, extracting 25 radiomics features combined with 59 clinical features. In addition, linear discriminant analysis was used to select 22 significant characteristics, and a four‐way feature selection method was used to identify 30 significant clinical features, resulting in a refined set of 52. Classification with machine learning models improved performance after LDA, achieving over 91% accuracy. We evaluated feature behavior across six PD severity stages and four clinical visits for progression analysis. The clinical features of MDS‐UPDRS were more sensitive to changes in the severity of the initial PD. At the same time, the integrated dataset, radiomics–MDS‐UPDRS, provided more balanced insights, showing a progression of 33.30%–83.30% and 36.36%–45.50% from the first visit to the fourth visit among the clinical and radiomics features and a progression of 73.33%–96.67% and 13.64%–54.55% between the minimal vs mild and minimal vs very severe stage. Our analysis also revealed practical links between progression features and real‐life scenarios, which highlights the practical value of our study for clinical decision‐making.

This study aims to construct and validate a predictable deep learning model associated with clinical data and multi-sequence magnetic resonance imaging (MRI) for short-term postoperative facial nerve function in patients with acoustic neuroma. A total of 110 patients with acoustic neuroma who underwent surgery through the retrosigmoid sinus approach were included. Clinical data and raw features from four MRI sequences (T1-weighted, T2-weighted, T1-weighted contrast enhancement, and T2-weighted-Flair images) were analyzed. Spearman correlation analysis along with least absolute shrinkage and selection operator regression were used to screen combined clinical and radiomic features. Nomogram, machine learning, and convolutional neural network (CNN) models were constructed to predict the prognosis of facial nerve function on the seventh day after surgery. Receiver operating characteristic (ROC) curve and decision curve analysis (DCA) were used to evaluate model performance. A total of 1050 radiomic parameters were extracted, from which 13 radiomic and 3 clinical features were selected. The CNN model performed best among all prediction models in the test set with an area under the curve (AUC) of 0.89 (95% CI, 0.84-0.91). CNN modeling that combines clinical and multi-sequence MRI radiomic features provides excellent performance for predicting short-term facial nerve function after surgery in patients with acoustic neuroma. As such, CNN modeling may serve as a potential decision-making tool for neurosurgery.

Stent malapposition (SM) following percutaneous coronary intervention (PCI) for myocardial infarction continues to present significant clinical challenges. In recent years, machine learning (ML) models have demonstrated potential in disease risk stratification and predictive modeling. ML models based on optical coherence tomography (OCT) imaging, laboratory tests, and clinical characteristics can predict the occurrence of SM. We studied 337 patients from the Affiliated Hospital of Zunyi Medical University, China, who had PCI and coronary OCT from May to October 2023. We employed nested cross-validation to partition patients into training and test sets. We developed five ML models: XGBoost, LR, RF, SVM, and NB based on calcification features. Performance was assessed using ROC curves. Lasso regression selected features from 46 clinical and 21 OCT imaging features, which were optimized with the five ML algorithms. In the prediction model based on calcification features, the XGBoost model and SVM model exhibited higher AUC values. Lasso regression identified five key features from clinical and imaging data. After incorporating selected features into the model for optimization, the AUC values of all algorithmic models showed significant improvements. The XGBoost model demonstrated the highest calibration accuracy. SHAP values revealed that the top five ranked features influencing the XGBoost model were calcification length, age, coronary dissection, lipid angle, and troponin. ML models developed using plaque imaging features and clinical characteristics can predict the occurrence of SM. ML models based on clinical and imaging features exhibited better performance.