Machine Learning Models for Predicting Liver Toxicity.

The best practice of watershed management is through the understanding of the hydrological processes. As a matter of fact, hydrological processes are highly associated with stochastic, non-linear, and non-stationary phenomena. Hydrological processes simulation and modeling are challenging issues in the domains of hydrology, climate and environment. Hence, the development of machine learning (ML) models for solving those complex hydrological problems took essential place over the past couple decades. It can be observed, hydrological data availability has increased remarkably, and thus computational resources has led to a resurgence in ML models’ development. It has been witnessed huge efforts on the hydrological processes modeling using the facility of ML models and several review researches have been conducted. Literature studies approved the capacity of ML models in the field of hydrology over the classical “traditional models” based on their forecastability, flexibility, precision, generalization, and modeling execution convergence speed. However, although several potential merits were observed in ML model’s development, several limitations are allied such as the interpretability of those black-box models, the practicality of the ML models in watershed management, and difficulty to explain the physical hydrological processes. In this survey, an exhibition for all the published review articles on the development of ML models for hydrological processes and recognize all the research gaps and potential research direction. The ultimate aim of the current survey is to establish a new milestone for the interested hydrology, environment and climate researchers on the applications of ML models.

Development of machine learning models for prediction of antibody non-specificity.

The application of machine learning models for prediction and prognosis of disease development has become an irrevocable part of cancer studies aimed at improving the subsequent therapy and management of patients. The application of machine learning models for accurate prediction of survival time in breast cancer on the basis of clinical data is the main objective of the presented study. The paper discusses an approach to the problem in which the main factor used to predict survival time is the originally developed tumor-integrated clinical feature, which combines tumor stage, tumor size, and age at diagnosis. Two datasets from corresponding breast cancer studies are united by applying a data integration approach based on horizontal and vertical integration by using proper document-oriented and graph databases which show good performance and no data losses. Aside from data normalization and classification, the applied machine learning methods provide promising results in terms of accuracy of survival time prediction. The analysis of our experiments shows an advantage of the linear Support Vector Regression, Lasso regression, Kernel Ridge regression, K-neighborhood regression, and Decision Tree regression—these models achieve most accurate survival prognosis results. The cross-validation for accuracy demonstrates best performance of the same models on the studied breast cancer data. As a support for the proposed approach, a Python-based workflow has been developed and the plans for its further improvement are finally discussed in the paper.

not merely the absence of disease or infirmity.

Background and purpose — External validation of machine learning (ML) prediction models is an essential step before clinical application. We assessed the proportion, performance, and transparent reporting of externally validated ML prediction models in orthopedic surgery, using the Transparent Reporting for Individual Prognosis or Diagnosis (TRIPOD) guidelines. Material and methods — We performed a systematic search using synonyms for every orthopedic specialty, ML, and external validation. The proportion was determined by using 59 ML prediction models with only internal validation in orthopedic surgical outcome published up until June 18, 2020, previously identified by our group. Model performance was evaluated using discrimination, calibration, and decision-curve analysis. The TRIPOD guidelines assessed transparent reporting. Results — We included 18 studies externally validating 10 different ML prediction models of the 59 available ML models after screening 4,682 studies. All external validations identified in this review retained good discrimination. Other key performance measures were provided in only 3 studies, rendering overall performance evaluation difficult. The overall median TRIPOD completeness was 61% (IQR 43–89), with 6 items being reported in less than 4/18 of the studies. Interpretation — Most current predictive ML models are not externally validated. The 18 available external validation studies were characterized by incomplete reporting of performance measures, limiting a transparent examination of model performance. Further prospective studies are needed to validate or refute the myriad of predictive ML models in orthopedics while adhering to existing guidelines. This ensures clinicians can take full advantage of validated and clinically implementable ML decision tools.

Enhancing wastewater treatment efficiency through machine learning-driven effluent quality prediction: A plant-level analysis

The increasing complexity of social science data and phenomena necessitates using advanced analytical techniques to capture nonlinear relationships that traditional linear models often overlook. This chapter explores the application of machine learning (ML) models in social science research, focusing on their ability to manage nonlinear interactions in multidimensional datasets. Nonlinear relationships are central to understanding social behaviors, socioeconomic factors, and psychological processes. Machine learning models, including decision trees, neural networks, random forests, and support vector machines, provide a flexible framework for capturing these intricate patterns. The chapter begins by examining the limitations of linear models and introduces essential machine learning techniques suited for nonlinear modeling. A discussion follows on how these models automatically detect interactions and threshold effects, offering superior predictive power and robustness against noise compared to traditional methods. The chapter also covers the practical challenges of model evaluation, validation, and handling imbalanced data, emphasizing cross-validation and performance metrics tailored to the nuances of social science datasets. Practical recommendations are offered to researchers, highlighting the balance between predictive accuracy and model interpretability, ethical considerations, and best practices for communicating results to diverse stakeholders. This chapter demonstrates that while machine learning models provide robust solutions for modeling nonlinear relationships, their successful application in social sciences requires careful attention to data quality, model selection, validation, and ethical considerations. Machine learning holds transformative potential for understanding complex social phenomena and informing data-driven psychology, sociology, and political science policy-making.

Systematic literature review of machine learning based software development effort estimation models

Introduction: Achievement of specified qualitative indicators in machine learning solutions depends not only on the efficiency of algorithms, but also on data properties. One of the lines for the development of classification and regression models is the specification of local properties of data. Purpose: To improve the qualitative predictors when solving classification and regression problems based on the adaptive selection of various machine learning models on separate local segments of data sample. Results: We propose a method that uses a combination of different models and machine learning algorithms on subsamples in regression and classification problems. The method is based on the calculation of qualitative predictors and the selection of the best models on the local segments of data sample. The finding of transformations of data and time series allows to create sample sets, with the data having different properties (for example, variance, sampling fraction, data range, etc.). We consider the data segmentation based on the change point detection algorithm in time series trends and on analytical information. On the example of the real dataset, we show the experimental values of the loss function for the proposed method with different classifiers on separate segments and on the whole sample. Practical relevance: The results can be used in classification and regression problems for the development of machine learning models and methods. The proposed method allows to improve classification and regression qualitative predictors by assigning models that have the best performance on separate segments.

Application of machine learning models for prediction of rheological properties of wax-modified asphalt binders

Development and validation of an explainable machine learning model for mortality prediction among patients with infected pancreatic necrosis.

The naturally occurring antioxidant lignan nordihydroguaiaretic acid has been used in traditional medicine to treat a variety of conditions and more recently has been investigated for its anticancer and antimicrobial properties. Nordihydroguaiaretic acid has also been shown to cause kidney toxicity in rats and there is evidence to suggest that chronic nordihydroguaiaretic acid consumption may cause liver toxicity in humans. Nordihydroguaiaretic acid likely undergoes biotransformation to a reactive quinone species, either an ortho-quinone or a para-quinone methide, which is responsible for its toxicity. In an effort to probe the toxicity of nordihydroguaiaretic acid, we oxidized nordihydroguaiaretic acid with both chemical and enzymatic systems and trapped the resultant products with glutathione. The nordihydroguaiaretic acid-glutathione adducts were compared with the products found when nordihydroguaiaretic acid was incubated in rat hepatic microsomes in the presence of glutathione. Glutathione metabolites consistent with ortho-quinone formation were the only oxidation products observed. Control experiments in microsomes however suggested that a majority of the nordihydroguaiaretic acid ortho-quinone glutathione adducts were formed as the result of nordihydroguaiaretic acid autoxidation. We measured the rate of this autoxidation process over a range of pH values and determined that the autoxidation reaction is base-catalyzed. We suggest that caution must be exercised when using nordihydroguaiaretic acid in experiments above pH 7.4 as relatively little of the parent compound may be left in incubations longer than 3 h.

Evidence Suggesting the 58-kDa Acetaminophen Binding Protein Is a Preferential Target for Acetaminophen Electrophile

An alternative biomimetic tool – Dual hydrophilic/reversed-phase interaction mode

The advent of modern genotyping technologies has revolutionized genomic selection in animal breeding. Large marker datasets have shown several drawbacks for traditional genomic prediction methods in terms of flexibility, accuracy, and computational power. Recently, the application of machine learning models in animal breeding has gained a lot of interest due to their tremendous flexibility and their ability to capture patterns in large noisy datasets. Here, we present a general overview of a handful of machine learning algorithms and their application in genomic prediction to provide a meta-picture of their performance in genomic estimated breeding values estimation, genotype imputation, and feature selection. Finally, we discuss a potential adoption of machine learning models in genomic prediction in developing countries. The results of the reviewed studies showed that machine learning models have indeed performed well in fitting large noisy data sets and modeling minor nonadditive effects in some of the studies. However, sometimes conventional methods outperformed machine learning models, which confirms that there's no universal method for genomic prediction. In summary, machine learning models have great potential for extracting patterns from single nucleotide polymorphism datasets. Nonetheless, the level of their adoption in animal breeding is still low due to data limitations, complex genetic interactions, a lack of standardization and reproducibility, and the lack of interpretability of machine learning models when trained with biological data. Consequently, there is no remarkable outperformance of machine learning methods compared to traditional methods in genomic prediction. Therefore, more research should be conducted to discover new insights that could enhance livestock breeding programs.