Measurement Performance Assessment of Analytical Chemistry Analysis Methods using Sample Exchange Data

Measured surface-atmosphere fluxes of energy (sensible heat, H, and latent heat, LE) and CO 2 ( FCO 2) represent the “true” flux plus or minus potential random and systematic measurement errors. Here, we use data from seven sites in the AmeriFlux network, including five forested sites (two of which include “tall tower” instrumentation), one grassland site, and one agricultural site, to conduct a cross-site analysis of random flux error. Quantification of this uncertainty is a prerequisite to model-data synthesis (data assimilation) and for defining confidence intervals on annual sums of net ecosystem exchange or making statistically valid comparisons between measurements and model predictions. We differenced paired observations (separated by exactly 24 h, under similar environmental conditions) to infer the characteristics of the random error in measured fluxes. Random flux error more closely follows a double-exponential (Laplace), rather than a normal (Gaussian), distribution, and increase as a linear function of the magnitude of the flux for all three scalar fluxes. Across sites, variation in the random error follows consistent and robust patterns in relation to environmental variables. For example, seasonal differences in the random error for H are small, in contrast to both LE and FCO 2, for which the random errors are roughly three-fold larger at the peak of the growing season compared to the dormant season. Random errors also generally scale with R n ( H and LE) and PPFD ( FCO 2). For FCO 2 (but not H or LE), the random error decreases with increasing wind speed. Data from two sites suggest that FCO 2 random error may be slightly smaller when a closed-path, rather than open-path, gas analyzer is used.

Multiple-component radiation-measurement error models

We investigated the conditions under which the information matrix, conditional on covariates, and the unconditional version, integrated over marginal distribution of covariates, are increasing functions of the measurement error variance, and when the conditional and unconditional asymptotic variances of the maximum likelihood estimate are decreasing functions of the measurement error variance. We say that a paradox occurs when one can decrease the variance of the maximum likelihood estimate by increasing measurement error. Two covariate measurement error models were considered: the Berk-son and the classical measurement error models, with continuous and binary dependent variables, The measurement error variance was assumed known. We found that in the linear model with Berkson eovariate measurement error, the paradox can occur when the model variance is known and quite large. With binary data and the Berkson eovariate measurement error, the paradox is likely to occur for rare events. The paradox based upon the unconditional variance, calculated as the inverse of the unconditional information matrix, does not occur with the classical measurement error model. However, if does occur for the conditional variance, as calculated by the inverse of the observed information matrix, in some circumstances. Empirical evidence for this is illustrated using data from the Nurses' Health Study.

ABSTRACTAn objective analysis is one of the main components of data assimilation. By combining observations with the output of a predictive model we combine the best features of each source of information: the complete spatial and temporal coverage provided by models, with a close representation of the truth provided by observations. The process of combining observations with a model output is called an analysis. To produce an analysis requires the knowledge of observation and model errors, as well as its spatial correlation. This paper is devoted to the development of methods of estimation of these error variances and the characteristic length-scale of the model error correlation for its operational use in the Canadian objective analysis system. We first argue in favor of using compact support correlation functions, and then introduce three estimation methods: the Hollingsworth–Lönnberg (HL) method in local and global form, the maximum likelihood method (ML), and the diagnostic method. We perform one-dimensional (1D) simulation studies where the error variance and true correlation length are known, and perform an estimation of both error variances and correlation length where both are non-uniform. We show that a local version of the HL method can capture accurately the error variances and correlation length at each observation site, provided that spatial variability is not too strong. However, the operational objective analysis requires only a single and globally valid correlation length. We examine whether any statistics of the local HL correlation lengths could be a useful estimate, or whether other global estimation methods such as by the global HL, ML, or should be used. We found in both 1D simulation and using real data that the ML method is able to capture physically significant aspects of the correlation length, while most other estimates give unphysical and larger length-scale values.Implications: This paper describes a proposed improvement of the objective analysis of surface pollutants at Environment and Climate Change Canada (formerly known as Environment Canada). Objective analyses are essentially surface maps of air pollutants that are obtained by combining observations with an air quality model output, and are thought to provide a complete and more accurate representation of the air quality. The highlight of this study is an analysis of methods to estimate the model (or background) error correlation length-scale. The error statistics are an important and critical component to the analysis scheme.

BackgroundIn epidemiological studies explanatory variables are frequently subject to measurement error. The aim of this paper is to develop a Bayesian method to correct for measurement error in multiple continuous exposures in individually matched case-control studies. This is a topic that has not been widely investigated. The new method is illustrated using data from an individually matched case-control study of the association between thyroid hormone levels during pregnancy and exposure to perfluorinated acids. The objective of the motivating study was to examine the risk of maternal hypothyroxinemia due to exposure to three perfluorinated acids measured on a continuous scale. Results from the proposed method are compared with those obtained from a naive analysis.MethodsUsing a Bayesian approach, the developed method considers a classical measurement error model for the exposures, as well as the conditional logistic regression likelihood as the disease model, together with a random-effect exposure model. Proper and diffuse prior distributions are assigned, and results from a quality control experiment are used to estimate the perfluorinated acids' measurement error variability. As a result, posterior distributions and 95% credible intervals of the odds ratios are computed. A sensitivity analysis of method's performance in this particular application with different measurement error variability was performed.ResultsThe proposed Bayesian method to correct for measurement error is feasible and can be implemented using statistical software. For the study on perfluorinated acids, a comparison of the inferences which are corrected for measurement error to those which ignore it indicates that little adjustment is manifested for the level of measurement error actually exhibited in the exposures. Nevertheless, a sensitivity analysis shows that more substantial adjustments arise if larger measurement errors are assumed.ConclusionsIn individually matched case-control studies, the use of conditional logistic regression likelihood as a disease model in the presence of measurement error in multiple continuous exposures can be justified by having a random-effect exposure model. The proposed method can be successfully implemented in WinBUGS to correct individually matched case-control studies for several mismeasured continuous exposures under a classical measurement error model.

Studies of the relationship between human resource (HR) practices and firm performance typically use a single respondent to assess firm level HR practices or HR effectiveness. However, previous research in other substantive areas suggests that rater differences are a potentially important source of measurement error. We demonstrate analytically the potential consequences of both random and systematic measurement error in research on HR and firm performance. However, our main focus is on random error and we show how generalizability theory can be applied to obtain better estimates of reliability by simultaneously recognizing multiple sources (e.g., items, raters) of random measurement error. These more inclusive reliability estimates, in turn, offer the possibility of more precisely quantifying substantive relationships in the HR and firm performance literature. In our sample, reliabilities (as estimated by generalizability coefficients) for single‐rater assessments of HR variables were generally below .50. This degree of measurement error, if present in substantive studies on HR and firm performance, could lead to considerable bias, given that an unstandardized regression coefficient is corrected for measurement error in the independent variable by dividing by its reliability coefficient (not its square root). We also found only limited convergent validity between HR and line managers ratings of a second type of HR measure, HR effectiveness. In general, our findings suggest that future researchers need to devote greater attention to measurement error and construct validity issues. Our study provides an example of how generalizability theory can be useful in this pursuit.

Modelling of errors in measurement

Background A laboratory procedure comprises a measurement procedure plus control procedure that validates the measurement. Numerous quality specifications for the measurement procedure are often set in terms of total allowable error (Tea); ie, that total measurement error (TEm) be less than or equal to Tea. Recommendations are usually based on the ratio of stable random measurement error Smeas) to Tea (sigma score), and implicitely assume that Smeas is stable. A method of evaluating the efficacy of QC procedures is to calculate the undetected lost medical utility (ULMU) function for a control procedure. ULMU functions are calculated from statistical power functions as: ULMU = (lost medical utility due to measurement error) X (1 – statistical power). This is an expected value of lost medical value not detected by QC. ULMU functions always have the shape of an inverted U: ie, at some level of TEm it reaches a maximum value. This maximum value is a way of specifying the medical efficacy of the QC procedure. Methods I have developed a QC simulation programnusing Microsoft Excel and its built-in programming language (VBA). Simulations were run on a Dell XP13 laptop computer. The simulator produces Guassian-distributed random numbers that may be scaled to simulate random measurement error (RE). It introduces analytical bias (SE), with both RE and SE ((and hence TEm) specified as a proportion of Tea. It allows definition of various QC rules, also with rejection parameters defined as a proportion of Tea, generating a 2-dimensions SPF that covers a user-specified range of SE and RE. It calculates an ULMU function based on the probability that TEm exceeds Tea, ie the probability of undetected non-conformity to Tea (UNC):UNC = (Probability of non-confomity) X (1-probabilty of rejection, Prej) A number of rules and procedures may be specified, including 1 point> limit, 2 points>limit, multimean, and root mean square deviation from the target value; rule violation may reject the run or repeat 1 or 2 controls. Rule parameters can be adjusted to achieve a desired maximum UNC. Loosening cotrol limite raises the entire UNC curve, while tightening the limits lowers the curve. At each level of maximum UNC, the simulator will also calculated the expected amount of rejection (Pfr) at stable operatoing conditions of SE and RE. Results The table below indicates the QC rule rejection limit for a maximum UNC of ∼10%, as well as the stable Smeas needed to achieve a Pfr of 1% and 0.1%, based on simulations of 10,000 or 30,000 runs. Conclusion Calculation oof the maximum UNC is a method of setting QC rules and procedures to assure a defined level of medically relevant maximum error, in essence a way of capping the probability of type II error. Use of more complex QC rules can lower the Pfr without sacrificing error detection. Rule parameters can be adjusted to yield any desired undetected non-conformity to error goals, but must be weighe against the cost in false rejection of stable operation.

The pharmacokinetic parameter estimation problem is reexamined within the framework of stochastic dynamic systems. Using this formalism, two sources of uncertainty are incorporated into the parameter estimation procedure: measurement error and process or model error. Consideration is given to linear dynamic models, with both model and measurement error terms modeled as Gaussian random processes. The maximum likelihood estimate of the parameters is obtained by using the Kaiman filter formulation of the model to compute the likelihood function which is then maximized by direct nonlinear optimization. This approach to maximum likelihood estimation, given process or model error as well as output error, is evaluated using several simulated pharmacokinetic parameter estimation problems.

Recognition that measurement error in the independent (predictor) variable of data used for regression modeling necessitates special methods of model fitting dates back to the late 1800s. In the ensuing 100 years attention was devoted almost entirely to measurement error in linear regression models, at which time advances in computing opened the door to the nonlinear statistical modeling generally, and to the study of measurement error in nonlinear regression modeling in particular. This article contains an introduction to the problem of measurement error in regression using linear regression measurement error models to illustrate key ideas. It includes a discussion of the types of measurement error commonly studied (classical and Berkson, differential and nondifferential) and how those types arise in practice. A summary of the consequences of ignoring measurement error when analyzing data measured with error is presented, with detailed results given for simple and multiple linear measurement error models. Pointers to the literature on both linear and nonlinear measurement error models are provided.

Light detection and ranging (LiDAR) has the advantage of simultaneous localization and mapping with high precision, making it one of the important sensors for intelligent robotics navigation, positioning, and perception. It is common knowledge that the random measurement error of global navigation satellite system (GNSS) observations is usually considered to be closely related to the elevation angle factor. However, in the LiDAR point cloud feature matching positioning model, the analysis of factors affecting the random measurement error of observations is unsophisticated, which limits the ability of LiDAR sensors to estimate pose parameters. Therefore, this work draws on the random measurement error analysis method of GNSS observations to study the impact of factors such as distance, angle, and feature accuracy on the random measurement error of LiDAR. The experimental results show that feature accuracy is the main factor affecting the measurement error in the LiDAR point cloud feature matching positioning model, compared with distance and angle factors, even under different sensor specifications, point cloud densities, prior maps, and urban road scenes. Furthermore, a simple random measurement error model based on the feature accuracy factor is used to verify the effect of parameter estimation, and the results show that the random error model can effectively reduce the error of pose parameter estimation, with an improvement effect of about 50%.

Consistent estimators for linear and nonlinear regression models with measurement errors in variables in the presence of validation data are proposed. The estimation procedures are based on least squares methods with regression functions replaced by wide-sense conditional expectation functions. The methods do not depend on distributional assumptions and are robust against the misspecification of a measurement error model. They are computationally and analytically simpler than semiparametric methods based on nonparametric regression or density functions.

Objetivo: Determinar os indices de erro e de discrepância de medicoes realizadas em modelos ortodonticos em acrilico com dentes de estoque em oclusao dentaria e maloclusao, utilizando paquimetro digital e avaliar a influencia do tempo de experiencia profissional na exatidao das medicoes. Metodo: Duas medicoes, com um intervalo minimo de 30 dias, foram realizadas por 30 alunos de graduacao em Odontologia da FO da UFJF, 12 alunos do curso de especializacao em Ortodontia da FO da UFJF e 6 professores do curso de especializacao em Ortodontia da UFJF. Apos a realizacao das medidas, as medias das dimensoes utilizadas no estudo foram obtidas por grupo. A analise estatistica utilizada lancou mao do teste t de Student, do ANOVA e do teste de Tukey. Resultados: Erros sistematicos foram observados na oclusao dentaria entre os alunos da especializacao e na maloclusao entre os professores da especializacao e os alunos da graduacao. Discrepâncias de medidas foram observadas na oclusao dentaria e na maloclusao entre os alunos da especializacao e os da graduacao. Erros de medidas foram encontrados na oclusao dentaria entre os alunos da graduacao e os da especializacao. Erros de medidas foram encontrados na maloclusao entre os professores da especializacao e os alunos da graduacao. Conclusao: O tempo de experiencia profissional teve influencia significativa nas medicoes, pois se verificou que o numero de erros sistematicos e discrepâncias de medidas foi maior no grupo de menor experiencia, isto e, alunos de graduacao, e menor no grupo de maior experiencia, grupo de professores da especializacao.

Analyses of variables measured with error are often flawed when measurement error is ignored. An extensive literature on linear measurement error models is available by [1], and more recently, for non-linear measurement error models by [2] and [3]. We investigate problems encountered in the analysis of longitudinal change, where the difference in some outcome variable is modeled on a set of regressor variables in a linear regression model. This type of analysis has become quite popular in biomedical research, and the results are often biased when the outcome variable is measured with error and its observed baseline value is included as a covariate in the fitted model. [4] demonstrated the effects of measurement error in the analysis of change in wall thickness of the common carotid artery. They showed the naive analysis led to erroneous findings due to the measurement error bias, even when the regressor variables were assumed to be measured precisely. In this paper, we present a method-of-moments correction for measurement error bias, provided the measurement error variance is known or can be estimated. This work extends the work of [4] to include regressor variables that are measured with error.

Clinical practice involves measuring quantities for a variety of purposes, such as aiding diagnosis, predicting future patient outcomes, and serving as endpoints in studies or randomized trials. Measurements are almost always prone to various sorts of errors, which cause the measured value to differ from the true value; accordingly, studies investigating measurement error frequently appear in this and other journals. The importance of measurement error depends upon the context in which the measurements in question are to be used. For example, a certain degree of measurement error may be acceptable if measurements are to be used as an outcome in a comparative study such as a clinical trial, but the same measurement errors may be unacceptably large to make measurements usable in individual patient management, such as screening or risk prediction. In the past 20 years many papers have been published advocating how studies of measurement error should be analyzed, with a paper by Bland and Altman1 being one of the most cited and well known examples. There has been much controversy concerning the choice of parameter to be estimated and reported, and consequently confusion surrounding the meaning and interpretation of results from studies investigating measurement error. In this paper we first distinguish between the general concepts of agreement and reliability to aid researchers in considering which are relevant for their particular application. We then review the statistical methods that can be used to investigate and quantify agreement and reliability, dealing separately with the different types of measurement error study, while emphasizing the largely common techniques that should be used for data analysis. We reiterate that the judgment of whether agreement or reliability are acceptable must be related to the clinical application, and cannot be proven by a statistical test. We highlight the fact that reliability depends on the population in which measurements are made, and not just on the measurement errors of the measurement method. We discuss the advantages of method comparison studies making at least two measurements with each measurement method on each subject. A key advantage is that the cause of a correlation between paired differences and means in the so-called Bland–Altman plot can be determined, in contrast to when only a single measurement is made with each method. Throughout the paper, we try to emphasize that calculated values of agreement and reliability from measurement error studies are estimates of parameters, and as such we should report such estimates with CIs to indicate the uncertainty with which they have been estimated. We restrict our attention to measurements of a continuous quantity; alternative methods are required for categorical data2. One difficulty in the measurement error field is the number of different terms used to describe studies of measurement error. The terms 'agreement', 'reliability', 'reproducibility' and 'repeatability' are used with varying degrees of consistency in the medical literature. We first make clear the distinction between the statistical concepts of agreement and reliability3. Agreement quantifies how close two measurements made on the same subject are, and is measured on the same scale as the measurements themselves. Two measurements of the same subject may differ for a number of reasons, depending on the conditions under which the measurements were made. In a method comparison study there will be differences because of inherent variability in each of the measurement methods, as well as potentially a bias between the measurements from the methods. If the measurements are made by different observers or raters, differences may be due to biases between the observers. Agreement between measurements is a characteristic of the measurement method(s) involved, which does not depend on the population in which measurements are made, unless bias or measurement precision varies with the true value being measured. One popular way of quantifying agreement is to estimate the 95% limits of agreement, as proposed by Bland and Altman1. These limits are defined such that we expect that, in the long run, 95% of future differences between measurements made on the same subject will lie within the limits. If reliability is high, measurement errors are small in comparison to the true differences between subjects, so that subjects can be relatively well distinguished (in terms of the quantity being measured) on the basis of the error-prone measurements. Conversely, if measurement errors tend to be large compared with the true differences between subjects, reliability will be low because differences between measurements of two subjects could be due purely to error rather than to a genuine difference in their true values. The reliability parameter is also known as an intraclass correlation (ICC), as it equals the correlation between any two measurements made on the same subject. Reliability takes values between zero and one, with a value of one corresponding to zero measurement error and a value of zero meaning that all the variability in measurements is due to measurement error. As a dimensionless quantity, it is arguably quite difficult to interpret, and deciding what value constitutes sufficiently high reliability is often made in a subjective fashion. Repeatability of measurements refers to the variation in repeat measurements made on the same subject under identical conditions4. This means that measurements are made by the same instrument or method, the same observer (or rater) if human input is required, and that the measurements are made over a short period of time, over which the underlying value can be considered to be constant. Variability in measurements made on the same subject in a repeatability study can then be ascribed only to errors due to the measurement process itself. Reproducibility refers to the variation in measurements made on a subject under changing conditions4. The changing conditions may be due to different measurement methods or instruments being used, measurements being made by different observers or raters, or measurements being made over a period of time, within which the 'error-free' level of the variable could undergo non-negligible change. The first type of study we consider is a repeatability study, in which we investigate and quantify the repeatability of measurements made by a single instrument or method, and in which the conditions of measurement remain constant. The second type of study we consider is a method comparison study, in which measurements are made using two measurement methods on a sample of subjects. The use of two different methods means that this is a reproducibility study, but the term method comparison is used as it clearly communicates the changing conditions under which measurements have been made. In contrast to a repeatability study, systematic bias may exist between measurements made by two different methods, and their measurement errors may have different SDs. The last type of study we consider is one in which measurements are made by different observers or raters. Again this is a type of reproducibility study. As with method comparison studies, biases may exist between observers, and their measurement SDs may differ. As we discuss below (see Measurements with observers or raters), if interest lies in quantifying the measurement error characteristics of the particular observers in one's study, exactly the same analysis methods should be used as for a method comparison study. In order to investigate the repeatability of measurements, a repeatability study must, for an appropriately selected sample, make at least two measurements per subject under identical conditions. This means that the measurements must be made by the same measurement method, or the same observer or rater. The objective is to then quantify the agreement and reliability of measurements made by that particular method or observer. If the differences between two measurements made on a subject are approximately Normally distributed, in the long run we expect the absolute difference between two measurements on a subject to differ by no more than the repeatability coefficient on 95% of occasions. To estimate the within-subject SD, we can fit a one-way analysis of variance (ANOVA) model to the data containing the repeat measurements made on subjects. ANOVAs can be fitted in all modern statistical packages. ANOVA models partition variability in data into that which can be ascribed to differences between groups, and that remaining to within groups. For a repeatability study, the groups are defined by the subjects under measurement, and this must be specified in the statistical package used. The ANOVA model estimates how much variation in measurements can be attributed to differences in the true, or 'error-free' values of subjects, with the remainder constituting measurement error. Fitting the ANOVA model results in estimates of the between-subject and within-subject SDs (or alternatively the corresponding variances, which are the SDs squared). The estimate of the within-subject SD can be used in the above formula to give an estimate of the repeatability coefficient. We illustrate with a study by Järvelä et al., who investigated the repeatability of measurements of flow volume made by one observer using three-dimensional (3D) power Doppler ultrasonography from 22 ovaries5. The estimated repeatability coefficient was 3.97, meaning that the absolute difference between any two future measurements made by that particular observer on a particular subject/unit are estimated to be no greater than 3.97 on 95% of occasions. It is important to note that the repeatability of another observer may be different, because of differences in the training and ability of observers. Because the repeatability coefficient calculated is an estimate, it is important to calculate a CI for it to indicate how precisely it has been estimated. A CI may be given automatically by statistical software, but in the Appendix we review how a 95% CI for the within-subject SD can be calculated. Such a CI can be used to find a CI for the repeatability coefficient by multiplying the CI limits by . If the CI for the within-subject variance is given by software instead, the limits must first be square rooted to give a CI for the within-subject SD. The ANOVA model assumes that the measurement errors are statistically independent of the true 'error-free' value, and that the SD of the errors is constant throughout the range of 'error-free' values. Sometimes the SD of errors increases with the true value being measured. This should be checked by plotting paired differences between measurements against their mean, the so called Bland–Altman plot. We illustrate this later in the context of a method comparison study (see Plotting the data) and describe how such heterogeneous errors can often be dealt with by making a log transformation (see Non-uniform variability in measurement of the repeatability coefficient on the differences between measurements being approximately Normally This can be checked by a or plot of the paired differences in measurements on each subject. made in the of the CI for the within-subject SD is that the measurement errors are If this is in the may be to The reliability of a measurement method is often of interest when measurements are to be used to between subjects or groups of subjects. For example, if we have a choice of two measurement methods that could be used to an outcome in a clinical or study, using the method with reliability will give greater statistical power to differences between groups, for a given sample In this we describe how measurements from a single method can be used to estimate the reliability in a given we discuss the use of reliability to measurement methods (see Reliability in method comparison and different observers (see in The same ANOVA model as above (see can be used to estimate statistical will automatically give the estimated which is the of we can the estimates of the and within-subject SDs into the formula given above (see Agreement and to estimate the For the flow data of Järvelä et an estimated of was This means that of the variability in measurements of the flow was estimated to be due to genuine differences in flow between with the remaining being due to errors in the measurement process and the observer Because the measurements were all made by one the reliability may be to as As with the repeatability the calculated is an estimate, and a 95% CI should be statistical give a but in the Appendix we review the of a 95% CI for the For the flow data of Järvelä et the estimate of a 95% of to Because we use the same ANOVA model to estimate reliability as we describe for agreement, the same of 95% CIs for the estimate on of the true 'error-free' values. The reliability of a measurement method depends upon the of the population in which the measurements are made. the of reliability given above (see Agreement and we that the of true 'error-free' values in the measured by the between-subject SD, the value of agreement between repeat measurements is a characteristic of the method or instrument the of measurement errors is the range of true reliability depends on the of measurement errors and the true in the population in which measurements are made. The is with a a method for measuring has a within-subject SD of which does not with the underlying value being measured. we a study to estimate the reliability, and we sample from a heterogeneous population in which the between-subject SD in true is 20 This give a reliability or of . we sample our subjects from a more in which the SD of true values is the same as the variability of the within-subject error. In this the reliability is to . If studies report only an estimate of the reliability (ICC), can only make use of the estimate if the population in which the to use such measurements has We that report estimates of and within-subject SD, in to the In this can whether the measurement method will be sufficiently for their application, in which the between subjects may be we use a measurement method or in clinical we must that the measurements it are to by the measurement method used, that measurements made with the method are using the method. If the measurements from the two methods are sufficiently close and the of a patient on their basis be the the method could the method in clinical because the method is or to The as to what constitutes depends on how the measurements are to be used. If the two measurements are made on the same or we can quantify their To investigate and quantify the agreement between measurements made by two methods, we must at a a sample of subjects using the measurement method and the proposed method. The data from such a study of of measurements from each with the containing the measurements from the two measurement methods. we making two measurements on each subject using each method because the one measurement per method is the most common we by analysis. The first to such a is to plot the The plot is of measurements from the method against from the method (or If measurements were from we expect the to lie on the of the of can be used to if there is if more data are above the than this that the method on the measurements on the of fit for this plot and report a statistical for whether the of the plot from the of As by Bland and in a paper in this we expect the to have a than one if the method on the any measurement and so a of the that the true is to one is not a it the same as a plot with the of of the between the measurements from two methods is often more by plotting the difference in a measurements from the two methods against the of their measurements, as first by and this is to as the Bland–Altman and is frequently in of measurement error We illustrate the plot using an from the literature. et volume measurement in with and volume was measured using and also by We have approximately their plot of differences against means and it is as using only data from the in volume measured by three-dimensional and by against their from study by et the SD and the SD, each with 95% CI The plot the difference between calculated using and against the of two values. et not their plot or of results to indicate which measurements were from It is important to be and always the same measurement from the The the of the paired from zero an estimate of the bias between the two methods. which measurements have been from which to which method, on measurements. The indicate the estimated limits of agreement their CI which we describe The plot can be used to the differences between measurements made by the two methods. The variability of the differences between the two methods how well the methods If the variability of the paired differences is the range of measurements, and there is no between the difference and mean, we can quantify the agreement between the methods by the limits of the of the limits of agreement, we illustrate how the for limits of agreement may be and how they can be dealt on we expect the difference in volume as measured by the two methods to lie between and for 95% of future measurements. It is important to that the limits of agreement calculated in this are just and as with any type of estimate it is to quantify and report how precisely the limits are estimated of 95% The estimated limits of agreement indicate how large the between the measurements will be on 95% of occasions. The whether the methods sufficiently well must then be made depending on the context in which the measurements will be used. In contrast to the repeatability which assumes no bias between measurements, the limits of agreement method this The of the paired differences whether on one method to or measurements to the measurements of the second method, which we to as a bias between the methods. In the data in from et al., there was of a bias between the two methods, because the difference between the methods was close to at We can a statistical to whether there is of bias by a of the differences paired of the measurements from each we the that the true of the differences is corresponding to no bias between the methods. For the data in this that there was no of a bias between and made using The limits of agreement method assumes that the SD of the differences is throughout the range of measurements. Sometimes this will not be the In frequently the SD of the differences will with the In this for small values the limits of agreement will be than for values the limits will be of the plot of differences against from the study by et that the variability of the differences may be when the value being measured is The SD of the paired differences below the of the means was it was for above the This can often be by of the measurements of the two If the difference in the of the measurements results in constant we can calculate the limits of agreement and CIs for the limits in the Because the difference of two is to the of the we can all the estimates made on the log scale by Because of the limits of agreement to the of one measurements to the For the data in the of the difference in measurements was with SD The limits of agreement on the log scale are to the of with 95% limits of agreement for the of to The 95% CIs can be calculated on the log scale to the which measurements were made by which method, we cannot whether the is for measurements by to by or a plot of the of the measurements by the two methods to their mean, using a with the estimated 95% limits of agreement and their 95% This that the of a SD for the paired differences is more of measured by three-dimensional (3D) and by against of measurements, on data published by et the SD and the SD, each with 95% CI to log transformation can also be used to try to For example, et estimate limits of agreement using paired differences in measurements as a of the of the two measurements. The key is that a transformation should be used which that are approximately Normally and have approximately SD the range of It is for there to be an between the paired differences and of this is in a study by et al., who the agreement between as measured using and the calculated using in We have the data from their Bland–Altman plot of the difference between the volume and volume against the mean, and it in There to be a between the paired differences and differences between volume measured by three-dimensional and by from study by et correlation the SD and the SD, each with 95% CI We can a statistical to the for a whether the correlation coefficient between the paired differences and means from zero or by of the differences against the The is known as in the context of the SD of measurements from two methods, which for the data in is statistically for an between paired differences and how should we than models for the difference as a of the we should be given to the cause of the A between the paired differences and means when the SD of measurements from one method from the SD of measurements from the other method. There are at least two of an between paired differences and The first is that there is between the difference in measurements from the two methods and true value being the bias between methods over the range of true values. The second is that the within-subject SDs of the two methods differ. This will in the of changing bias if a method has or measurement errors than the method. This is and when a or measurement method is compared with a If the cause of the correlation is within-subject SDs and we were to plot the paired differences against the true value being there be no The between the Bland–Altman plot and a plot against true values because the paired means measurement errors, in contrast to the true values. as by and with only one measurement per method per we cannot which of two is the To we must make an that the within-subject SDs of the two methods are so that the correlation is attributed to changing or that the two within-subject SDs are and that there in no between bias and true value we may have a of For the of we with the from et by that the correlation is due to a difference in the within-subject SDs of the two methods. A correlation between differences and means will when the method with measurement error is from measurements of the method with error. For the data in the correlation is the errors than the measured by which and to the volume measured by as the true that such measurements were to no an that there is no changing we can calculate 95% limits of agreement, as by et al., because the limits of agreement method does not that the two within-subject SDs are In order to from the data whether changing bias is we must make at least two measurements with each method on each subject. This study has often been but is we describe how such studies can be to whether a correlation between paired differences and means is due to changing bias between the methods (see with two measurements from each As reliability may be a parameter with which to two different measurement methods. To estimate each reliability, we must make at least two measurements of each subject with each of the two methods. The repeat measurements from each method can then be as two repeatability studies (see estimates of each reliability, which can be advantage of using reliability to measurement methods is that it can be used to methods when their measurements are given on different or as the reliability is a dimensionless Because reliability depends on the of the true values in the population (see Reliability depends on population it is that reliability are compared only if they have been estimated from the same report a single reliability estimate from method comparison studies in which it that only a single measurement per subject per method is It appear that the estimates are using a one-way ANOVA as above (see The one-way ANOVA model assumes that there are no systematic biases between measurements within subjects, and that the within-subject SDs are for all measurements measurements are from two different methods, of may be bias may exist between the methods and their within-subject SDs may differ. If is the model is and the estimates of within and between subject SD are estimates of different The reliability estimate then has a different interpretation from the We against the estimate from the one-way ANOVA to data from two different measurement methods. As making two measurements with each method an of whether bias between the methods is constant or whether the measurement error SDs differ. the measurements from each method can be separately as two repeatability studies, using the methods estimates of the repeatability coefficient and reliability for each method. The Bland–Altman plot of paired differences against means can be by using the of a two measurements from each method in of the single As with the Bland–Altman plot on a single measurement from each method, an correlation between differences and means could be due to changing bias or a difference in measurement error between the methods. We describe a to whether any bias between measurements made by a method with the as measured by the method. We by the of the two measurements made using the method and we by the measurement made on subject by the measurement method. A plot of against can then be used to investigate whether the bias between the and methods with the as measured by the method. It is that is against rather than against because the a to the common measurement error in and It is for the same that plotting paired differences between measurements from two methods against the measurements from one method is in method comparison between values of and that the bias between the methods with the true value as measured by the method. A statistical of this can be by a for with as the The for the that the in this from zero the of against the of constant If of bias changing with true value is we may be in the at which the bias between the methods We can estimate this by the estimate from the above model by our estimate of the This quantity is an estimate of the in bias method for a in the true value as measured by the method. The choice to against is We could have against and have a different and estimate of the at which the bias This choice is because we will two different and because it means the is statistically The model underlying is a type of and as such can be fitted using software for The is to and for measurements are made by observers or raters. measurements made by two different observers are than are two measurements made by the same observer. as with two methods, measurements from two observers may differ due to bias between the observers observer and their measurement errors may also have different SDs. For example, measurements from an observer who can make more measurements will have a SD than made by a observer. If measurements in the future are to be made by different observers, we to describe and quantify the differences between such measurements in order to whether differences are genuine or may be due to measurement error. As with a method comparison study, the way to study this is for each observer to make at least two measurements of a sample of subjects. The of such a study and the type of statistical analysis that are should be by whether interest lies in a particular of observers, or whether we are in a population of observers or raters. If future measurements are to be made by a of observers, the measurement error study should each of observers making measurements of a sample of subjects, with at least two measurements per observer per subject. We can then use exactly the same methods as for method different observers as different measurement methods. If each observer two or more measurements on each we can whether there is bias or changing bias between observers. We can the bias of future measurements (in by measurements using the corresponding estimated We can also estimate repeatability and reliability for each using the one-way ANOVA model (see It may be of interest to which observers are more and if differences in reliability can be related to observer such as of or If we are to that biases between observers are we can fit a so-called model to such a for a subject and observer The estimates indicate the and for bias between observers. such models can be to the measurement error SD to differ between observers. The observers in a measurement error study can often be considered as a sample of observers from a population of observers who may be used in future studies or clinical In this we are not in the particular observers in the measurement error study, but only in the that they the population of observers. In this it is important that a number of observers is used in the measurement error study. For example, if the measurement error study only two observers, can be the population of observers, because we have a sample of just Because the observers in the measurement error study are considered a sample from the population of observers, we such a study using a model that the observer as a We use a with subject and observer Fitting a model estimates of the between-subject SD, SD and the measurement error SD to be the same for different The SD variability in measurements due to observers, or biases between the observers. such estimates one can calculate the SD of the difference in two measurements, made by the same observer or by two different observers. the SD is the will be than the This is because biases between observers to make measurements from different observers it is more difficult to distinguish between subjects on the basis of measurements made by two different observers than if the subjects been measured by the same observer. In this paper we have distinguished between the concepts of agreement and parameter is to the as they describe different characteristics of the measurement The choice of what to report in a particular study should be by how measurements are to be used in the and also by the fact that may to use a measurement method in a different We have the fact that the reliability of a method depends not only on the of the measurement errors but on the of true values in the population in which measurements are made. As measurement techniques potentially may be used in a variety of clinical and different it is to report estimates of and within-subject SDs. We have which methods we are for the analysis of repeatability studies, method comparison studies, and studies with measurements made by different observers or raters. In we not a single reliability coefficient should be used for method comparison If the reliability of two methods are to be each reliability should be estimated by making at least two measurements on each subject with each measurement method. We have how an between paired differences and means may not be by changing bias between two methods. Such an may also be by a difference in the measurement error but with only one measurement per subject per method it is not to which of is the comparison studies should make at least two measurements per subject per method. This an of the of any between paired differences and means for measurements made by the two methods, and also the repeatability and reliability of each method to be estimated. measurements an observer or measurement error studies must use an number of observers if interest lies in making a population of observers. we results for the of CIs for two in the one-way ANOVA in which two measurements are from each