Microcalcification detection using combination of wavelet transform and morphology

Mammography is one of the most efficient imaging techniques for the early detection and diagnosis of breast cancer in woman. The appearance of microcalcifications (MCs) in X-ray mammograms can be regarded as important early diagnostic feature of breast cancer. However, the detection of MCs in X-ray mammograms only depend on radiologists by visual inspection is a difficult task. In this paper, a novel algorithm for the automated detection of MCs in digital mammograms is described. The aim of approach is to locate suspicious MCs by analyzing the distribution of brightness over the digital mammograms. The algorithm for the detection of MCs is performed in two steps. First, the digital X-ray mammogram intensity surface is well-fitted by the least squares support vector machines (LS-SVM), and then the maximum extremum points are detected on the fitted intensity surface by convolving the image with the second order directional derivative operators deduced from the mapped LS-SVM with mixture of kernels. The proposed approach is developed and evaluated by using MIAS database. The experimental results demonstrate the possible MCs are detected accurately and efficiently.

Detection of microcalcifications in digital mammograms using combined model-based and statistical textural features

This paper presents a computer-aided diagnosis (CAD) system for automatic detection of clustered microcalcifications (MCs) in digitized mammograms. The proposed system consists of two main steps. First, potential MC pixels in the mammograms are segmented out by using four mixed features consisting of two wavelet features and two gray level statistical features and then the potential MC pixels are labeled into potential individual MC objects by their spatial connectivity. Second, MCs are detected by extracting a set of 17 features from the potential individual MC objects. The classifier which is used in the first step is a multilayer feedforward neural network classifier but for the second step we have used Adaboost with SVM-based component classifier. Component classifiers which we used in our combining method are SVM classifiers with RBF kernel. The method was applied to a database of 40 mammograms (Nijmegen database) containing 105 clusters of MCs. A free-response operating characteristics (FROC) curve is used to evaluate the performance of CAD system. Results show that the proposed system gives quite satisfactory performance. In particular, 89.55% mean true positive detection rate is achieved at the cost of 0.921 false positive per image.

This paper presents a machine learning based approach for the discrimination of malignant and benign microcalcification (MC) clusters in digital mammograms. A series of morphological operations was carried out to facilitate the feature extraction from segmented microcalcification. A combination of morphological, texture, and distribution features from individual MC components and MC clusters were extracted and a correlation-based feature selection technique was used. The clinical relevance of the selected features is discussed. The proposed method was evaluated using three different databases: Optimam Mammography Image Database (OMI-DB), Digital Database for Screening Mammography (DDSM), and Mammographic Image Analysis Society (MIAS) database. The best classification accuracy (%) was achieved for OPTIMAM using a stack generalization classifier with 10-fold cross validation obtaining an A value equal to .

Clustered microcalcifications (MCCs) on mammograms are important hints of breast cancer. Nevertheless, it is a complex and difficult task for radiologists to detect the clustered MCCs from the tissue background of mammograms only by naked eyes. This paper presents a method for computer-aided detection of MCCs in digital mammograms. The detection algorithm mainly consists of two different methods. The first one, based on the difference-image technique, recognizes high-frequency signals and very high-frequency noise. The second one is able to extract high-frequency signal by exploiting a wavelet based noise suppression and neural network (NN) classification. In the false-positive reduction step, false signals are separated from MCCs by means of an AND operation on signals from two methods. The algorithm is tested with a series of clinical mammograms. A sensitivity ofmore than 90% is obtained at a relatively low false-positive (FP) detection of 2.18 per image. The results are compared with thejudgement ofradiological experts, and they are very encouraging.

This paper presents an approach for early breast cancer diagnostic by employing combination of artificial neural networks (ANN) and wavelet based subband image decomposition which detect microcalcification in digital mammograms. The microcalcifications correspond to high-frequency components of the image spectrum, detection of microcalcifications is achieved by decomposing the mammograms into different frequency subbands, suppressing the low-frequency subband, and finally, reconstructing the mammogram from the subbands containing only high frequencies. For this approach we employed different types of wavelet packets. We used the result as an input of neural network for classification. The proposed methodology is tested using the Nijmegen and the Mammographic Image Analysis Society (MIAS) mammographic databases and images collected from local hospitals. Results are presented as the receiver operating characteristic (ROC) performance and are quantified by the area under the ROC curve.

In computer-aided detection of microcalcifications (MCs), the detection accuracy is often compromised by frequent occurrence of false positives (FPs), which can be attributed to a number of factors, including imaging noise, inhomogeneity in tissue background, linear structures, and artifacts in mammograms. In this study, the authors investigated a unified classification approach for combating the adverse effects of these heterogeneous factors for accurate MC detection. To accommodate FPs caused by different factors in a mammogram image, the authors developed a classification model to which the input features were adapted according to the image context at a detection location. For this purpose, the input features were defined in two groups, of which one group was derived from the image intensity pattern in a local neighborhood of a detection location, and the other group was used to characterize how a MC is different from its structural background. Owing to the distinctive effect of linear structures in the detector response, the authors introduced a dummy variable into the unified classifier model, which allowed the input features to be adapted according to the image context at a detection location (i.e., presence or absence of linear structures). To suppress the effect of inhomogeneity in tissue background, the input features were extracted from different domains aimed for enhancing MCs in a mammogram image. To demonstrate the flexibility of the proposed approach, the authors implemented the unified classifier model by two widely used machine learning algorithms, namely, a support vector machine (SVM) classifier and an Adaboost classifier. In the experiment, the proposed approach was tested for two representative MC detectors in the literature [difference-of-Gaussians (DoG) detector and SVM detector]. The detection performance was assessed using free-response receiver operating characteristic (FROC) analysis on a set of 141 screen-film mammogram (SFM) images (66 cases) and a set of 188 full-field digital mammogram (FFDM) images (95 cases). The FROC analysis results show that the proposed unified classification approach can significantly improve the detection accuracy of two MC detectors on both SFM and FFDM images. Despite the difference in performance between the two detectors, the unified classifiers can reduce their FP rate to a similar level in the output of the two detectors. In particular, with true-positive rate at 85%, the FP rate on SFM images for the DoG detector was reduced from 1.16 to 0.33 clusters/image (unified SVM) and 0.36 clusters/image (unified Adaboost), respectively; similarly, for the SVM detector, the FP rate was reduced from 0.45 clusters/image to 0.30 clusters/image (unified SVM) and 0.25 clusters/image (unified Adaboost), respectively. Similar FP reduction results were also achieved on FFDM images for the two MC detectors. The proposed unified classification approach can be effective for discriminating MCs from FPs caused by different factors (such as MC-like noise patterns and linear structures) in MC detection. The framework is general and can be applicable for further improving the detection accuracy of existing MC detectors.

Automatic detection of clustered microcalcifications in digital mammograms using mathematical morphology and neural networks

This paper attempts to pinpoint different techniques for Pectoral Muscle (PM) segmentation, Microcalcification (MC) detection and classification in digital mammograms. The segmentation of PM and detection of MC and its classification are mostly based on image processing and data mining techniques. The review centered on major techniques in image processing and data mining that is employed for PM segmentation, MC detection and classification in digital mammograms. Breast cancer is one of the significant causes of death among women aged above 40. Mammography is considered the most successful means for prompt and timely detection of breast cancers. One notable visual indication of the malignant growth is the appearance of Masses, Architectural Distortions, and Microcalcification Clusters (MCCs). There are some disadvantages and hurdles for mankind viewers, and it is hard for radiologists to supply both precise and steady assessment for a large number of mammograms created in extensive screening. Computer Aided Detection has been employed to help radiologists in detecting MC and MCCs. The automatic recognition of malignant MCCs could be very helpful for diagnostic purpose. In this paper, we summarize the methods of automatic detection and classification of MCs in digitized mammograms. Pectoral muscle segmentation techniques are also summarized. The techniques used for segmentation of PM, MC detection and classification in a digitized mammogram are reviewed.

Mammogram is the best available radiographic method to detect breast cancer in the early stage. However detecting a microcalcification clusters in the early stage is a tough task for the radiologist. Herein we present a novel approach for classifying microcalcification in digital mammograms using Nonsubsampled Contourlet Transform (NSCT) and Support Vector Machine (SVM). The classification of microcalcification is achieved by extracting the microcalcification features from the Contourlet coefficients of the image and the outcomes are used as an input to the SVM for classification. The system classifies the mammogram images as normal or abnormal and the abnormal severity as benign or malignant. The evaluation of the system is carried on using Mammography Image Analysis Society (MIAS) database. The experimental result shows that the proposed method provides improved classification rate.

In this paper, we propose a novel combinational SVM algorithm via a set of decision rules to achieve better performances in microcalcification detection inside digital mammograms towards computer aided breast cancer diagnosis. Based on the discovery that the polynomial SVM is sensitive to MC (microcalcification) pixels and the linear SVM is sensitive to non-MC pixels, we designed an adaptive threshold mechanism via establishment of their correspondences to exploit the complementary nature between the polynomial SVM and the linear SVM. Experiments show that the proposed algorithm successfully reduced false positive detection rate while keeping the true positive detection rate competitive.

Detection of suspicious masses in mammograms play a vital role in early diagnosis of breast cancer, to reduce the death rate among women. The presence of masses and calcification’s in mammograms is distinguishing signs for breast cancer diagnosis. But in some cases, due to contrast variation, fuzzy boundaries and presence of noise in mammograms, segmentation and detection of masses is challenging assignment. This paper presents a new segmentation approach to detect masses in mammographic images. The proposed approach consist of artifacts elimination and pectoral region extraction, suspicious mass enhancement using dual morphological operation technique and finally, extraction of Regions of Interest (ROIs) from background using scaled Reyni entropy. The proposed system has been tested on two data-sets i.e. mini- Mammographic Image Analysis Society (mini-MIAS) and Digital Database for Screening Mammography (DDSM), over 50 and 90 mammograms respectively. Performance achieved with proposed system in terms of True Positive Fraction (TPF) yields 93.2% and 93.9% respectively, at the rate of 1.48 and 0.74 average False Positive per Image (FP/I), tested on both Cranio-Caudal (CC) and Medio-Lateral Oblique (MLO) views. The obtained experimental results demonstrates that proposed method gives improved results for mass detection and can be useful for radiologists in diagnosis of breast cancer at early stage.

Linear structures are a major contributor to false-positives (FPs) in detection of clustered microcalcifications (MCs) in mammograms. We propose a unified classifier approach to incorporate the dichotomous effect of linear structures in MC detection, the purpose being to suppress the FPs associated with linear structures. We introduce a dummy variable in the classifier model as in traditional regression analysis, the role of which is to adapt the input features to the classifier according to the presence of linear structures. In the experiment we demonstrate the proposed approach by using Adaboost decision stumps as the unified classifier. The results on a set of 200 mammogram images (all containing clustered MCs) show that it could reduce the FPs in an existing SVM detector by up to 47.3% with the true-positive rate at 85%.

In this chapter, computer aided detection and diagnosis for Breast tumor detection and classification in Mammography is proposed. The proposed system based on four phases. In the first phase, mammogram image is segmented to sub images with size 64 × 64 pixel then high intensity value of pixel is defined in this sub image and specifies this intensity as a seed point to region growing (RG) algorithm which used to specify the ROI. In the second phase, texture features were extracted using gray-level co-occurrence matrix (GLCM) and combined with shape features to characterize region of interest (ROI) to normal, benign or malignant. In the third phase, malignant ROIs are diagnosed and specified to aided doctor for decision taking. Finally, different methods for evaluating classifier are used using confusion matrix, kappa coefficient and response receiver operating characteristic curve (ROC). The effectiveness of the proposed system was measured using 322 mammogram images from the mammographic image analysis society (MIAS) database. From experimental results show that, the accuracy obtained from ROC curve analysis is AUC 94 % with standard error 0.11. The experimental results shows that the proposed system can accurately segment the breast region in a large range of digitized mammograms.

Introduction: Studies that examine the role of rare variants in both simple and complex disease are increasingly common. Though the usual approach of testing rare variants in aggregate sets is more powerful than testing individual variants, it is of interest to identify the variants that are plausible drivers of the association. We present a novel method for prioritization of rare variants after a significant aggregate test by quantifying the influence of the variant on the aggregate test of association. Methods: In addition to providing a measure used to rank variants, we use outlier detection methods to present the computationally efficient Rare Variant Influential Filtering Tool (RIFT) to identify a subset of variants that influence the disease association. We evaluated several outlier detection methods that vary based on the underlying variance measure: interquartile range (Tukey fences), median absolute deviation, and SD. We performed 1,000 simulations for 50 regions of size 3 kb and compared the true and false positive rates. We compared RIFT using the Inner Tukey to 2 existing methods: adaptive combination of p values (ADA) and a Bayesian hierarchical model (BeviMed). Finally, we applied this method to data from our targeted resequencing study in idiopathic pulmonary fibrosis (IPF). Results: All outlier detection methods observed higher sensitivity to detect uncommon variants (0.001 < minor allele frequency, MAF > 0.03) compared to very rare variants (MAF <0.001). For uncommon variants, RIFT had a lower median false positive rate compared to the ADA. ADA and RIFT had significantly higher true positive rates than that observed for BeviMed. When applied to 2 regions found previously associated with IPF including 100 rare variants, we identified 6 polymorphisms with the greatest evidence for influencing the association with IPF. Discussion: In summary, RIFT has a high true positive rate while maintaining a low false positive rate for identifying polymorphisms influencing rare variant association tests. This work provides an approach to obtain greater resolution of the rare variant signals within significant aggregate sets; this information can provide an objective measure to prioritize variants for follow-up experimental studies and insight into the biological pathways involved.