• Home
  • Search
  • Non-coding RNA transcriptome analysis of circulating human monocytes reveals subpopulation-enriched transcripts and selective isoforms differentially expressed during acute myocardial infarction
  • https://doi.org/10.1093/ehjci/ehaa946.3726Copy DOI Icon

Non-coding RNA transcriptome analysis of circulating human monocytes reveals subpopulation-enriched transcripts and selective isoforms differentially expressed during acute myocardial infarction

Show More
  • Abstract
  • Literature Map
  • Similar Papers
Abstract

Abstract Background Acute inflammation leads to increased myelopoiesis in the bone marrow and recruitment of immune cells to respective sites of injury. Yet, in certain cases of high demand such as acute tissue damage as in acute myocardial infarction (AMI), innate immune cells can be additionally recruited from lymphoid organs such as the spleen. Monocytes are important in both onset and resolution of inflammation comprising a huge repertoire of coding and non-coding RNA molecules regulating a fast-acting immune response. Long non-coding RNAs (lncRNA) emerge as novel regulatory cell-specific molecules, which are able to influence cell physiology in numerous ways. Purpose Delineate monocyte subpopulations from patients with AMI compared to healthy controls based on their non-coding transcriptome, different isoform usage and associated source of origin. Methods and results Next generation bulk RNA sequencing has been performed from human monocytes after pre-sorting for CD14 expression and subsequent separation into three major subpopulations based on their surface markers CD14 and CD16 using a FACS Aria II cell sorter. Non-coding RNA expression shows clear differences between cells from healthy controls versus patients with AMI and among subpopulations. Intensive bioinformatics analysis revealed numerous annotated lncRNA, antisense, pseudogene and circular RNAs displaying significant differences in their expression profiles. Some lncRNA show positive or negative correlations with their respective coding antisense gene or their convergent or divergent sense neighbouring gene, such as linc02207 vs MCTP2, SAP30-AS vs SAP30, BID-AS vs BID, HLX-AS vs HLX or TNFAIP3-AS vs TNFAIP3. We also identified the existence of different isoforms of certain lncRNA and a distinct preference thereof, such as linc02207- 217 isoform being most abundant. Real-time PCR was applied for validation of lncRNA expression profile and their nucleocytoplasmic distribution observing preferential nuclear expression for most lncRNA. In vitro assays for silencing and overexpression approaches as well as treatment with inflammatory stimuli and in silico bioinformatics analysis will help to unravel their functionality. Additionally mapping our bulk RNA data to deconvoluted single cell RNAseq data from publicly available human cell atlas (HCA), is applied to additionally unravel the origin of particular subpopulations within the AMI monocytes, associating their origin to either spleen or bone marrow. Conclusions High read depth bulk RNA sequencing revealed a human monocyte-specific long non-coding RNA transcriptome differentially expressed in three predefined subpopulations and disease stages. Distinct expression of lncRNA and associated coding genes as well as distinct isoform preference implies specific functionalities. Studying these molecules and their interaction partners will unravel functional participants in the development of therapeutic approaches for cardiovascular diseases. Funding Acknowledgement Type of funding source: Public grant(s) – National budget only. Main funding source(s): DZHK, SNF

Similar Papers
  • Research Article

Shortening pre-hospital time delay in patients with acute myocardial infarction using a modelling-based narrative intervention with a virtual heart attack experience: a randomized controlled trial

  • Oct 12, 2021
  • European Heart Journal
  • P Li +6
  • Research Article

Less risk factor at AMI onset, higher risk in prognosis---the paradoxical phenomenon from MIMIC-III database

  • May 03, 2023
  • European Heart Journal: Acute Cardiovascular Care
  • Y Yang +8
  • Research Article

Deficiency of myeloid prolyl hydroxylase domain proteins aggravates atherogenesis via macrophage apoptosis and paracrine fibrotic signaling

  • Oct 12, 2021
  • European Heart Journal
  • J Sluimer +14
  • PDF
  • Research Article
  • Citations297

Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes.

  • Jun 09, 2014
  • Nature Communications
  • Nicholas E Ilott +12
  • Research Article
  • Citations76

Dysregulation of the long non-coding RNA transcriptome in a Rett syndrome mouse model

  • Jul 01, 2013
  • RNA Biology
  • Paolo Petazzi +8
  • Research Article
  • Citations78

Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing

  • Jul 25, 2014
  • Molecular oncology
  • Gabriel G Malouf +13
  • Research Article

Significance of patient-reported outcomes for occupational resumption and quality of life after cardiac rehabilitation

  • Nov 01, 2020
  • European Heart Journal
  • A Salzwedel +8
  • Research Article

Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution.

  • Jul 08, 2025
  • Nature protocols
  • Oguzhan Begik +4
  • Research Article

Small Non-coding RNA Transcriptome in Sessile Serrated Colon Polyps

  • Oct 01, 2016
  • American Journal of Gastroenterology
  • Priyanka Kanth +7
  • PDF
  • Research Article
  • Citations7

Genetic and immunological insights into COVID-19 with acute myocardial infarction: integrated analysis of mendelian randomization, transcriptomics, and clinical samples

  • Nov 06, 2023
  • Frontiers in Immunology
  • Zequn Zheng +4
  • Research Article

Intravenous vagal stimulation catheter, JOHAKU, rapidly decreases heart rate and myocardial oxygen consumption without worsening hemodynamics

  • Oct 03, 2022
  • European Heart Journal
  • S Yokota +8
  • Research Article
  • Citations1

Predicting adverse ventricular remodelling and poor outcome after acute myocardial infarction by a distinctive miRNA signature

  • Nov 01, 2020
  • European Heart Journal
  • L.M Rincon +7
  • PDF
  • Research Article

Association of C1q/TNF-related protein-9 (CTRP9) level with obstructive sleep apnea in patients with coronary artery disease

  • Nov 01, 2020
  • European Heart Journal
  • X Wang +8
  • Research Article
  • Citations3

Dynamic SPECT with assessment myocardial blood flow and coronary flow reserve in MINOCA patients: comparison with cardiac magnetic resonance

  • Feb 08, 2021
  • European Heart Journal - Cardiovascular Imaging
  • A Mochula +5
  • Research Article

Predicting the outcome of autologous cell therapy on ischemic heart disease; a potential role of risk factors on cell therapy efficacy?

  • Nov 01, 2020
  • European Heart Journal
  • P.P Zwetsloot +8
Cactus Communications logo

Copyright 2026 Cactus Communications. All rights reserved.