Normalized dimensionality reduction using nonnegative matrix factorization

In this work, we will consider the dimension reduction of the set of time series, such as economic data, to find the meaningful basis vector for the set of data, and indicate which data use which basis vector. Usually each of the time series is analyzed independently in economics but here we will analyze the set of time series simultaneously. Since some of the economic data are measured as positive values and we want to decompose them as a mixture of the parts, we will apply non-negative matrix factorization to the economic data. Non-negative matrix factorization can compress dimensions by approximating a non-negative matrix with the product of two non-negative matrices. The two non-negative matrices are called the coefficient matrix and the basis matrix, and the basis matrix can be considered as a dimensionally compressed matrix. If the standard non-negative matrix factorization is used for economic data, the basis matrix may not be smooth. We think that the basis vectors should be smooth except a few special economical incidents. In the proposed method, a Graph-based non-negative matrix factorization is introduced to regularize the basis matrix of the time series. A path graph for representing the time series of economic data is incorporated into the non-negative matrix factorization as regularization. As a result, basis vectors that maintains the time series of economic data are decomposed. Furthermore, we propose to introduce a sparsity in the non-negative matrix factorization. Traditionally, the sparsity incorporated into non-negative matrix factorization has been used for basis vectors. However, the proposed method introduces the sparsity for coefficient vectors. Thus the proposed method, which simultaneously incorporates the sparsity for the coefficient vectors and the smoothness for the basis vectors, can extract the smooth basis vectors and the original economical data are approximated as the weighted sum of the few bases vectors. This allows us to discover economic trends and the best-fit trends for each data at the same time.

This paper deals with algorithms for positive semidefinite matrix factorization (PSDMF). PSDMF is a recently-proposed extension of nonnegative matrix factorization with applications in combinatorial optimization, among others. In this paper, we focus on improving the local convergence of an alternating block gradient (ABC) method for PSDMF in a noise-free setting by replacing the quadratic objective function with the Poisson log-likelihood. This idea is based on truncated Wirtinger flow (TWF), a phase retrieval (PR) method that trims outliers in the gradient and thus regularizes it. Our motivation is a recent result linking PR with PSDMF. Our numerical experiments validate that the numerical benefits of TWF may carry over to PSDMF despite the more challenging setting, when initialized within its region of convergence. We then extend TWF from PR to affine rank minimization (ARM), and show that although the outliers are no longer an issue in the ARM setting, PSDMF with the new objective function may still achieves a smaller error for the same number of iterations. In a broader view, our results indicate that a proper choice of objective function may enhance convergence of matrix (or tensor) factorization methods.

Non-negative matrix factorization (NMF) has been one of the most popular methods for feature learning in the field of machine learning and computer vision. Most existing works directly apply NMF on high-dimensional image datasets for computing the effective representation of the raw images. However, in fact, the common essential information of a given class of images is hidden in their low rank parts. For obtaining an effective low-rank data representation, we in this paper propose a non-negative low-rank matrix factorization (NLMF) method for image clustering. For the purpose of improving its robustness for the data in a manifold structure, we further propose a graph regularized NLMF by incorporating the manifold structure information into our proposed objective function. Finally, we develop an efficient alternating iterative algorithm to learn the low-dimensional representation of low-rank parts of images for clustering. Alternatively, we also incorporate robust principal component analysis into our proposed scheme. Experimental results on four image datasets reveal that our proposed methods outperform four representative methods.

Non-negative subspace feature representation for few-shot learning in medical imaging

Profile-Decomposing Output of Multi-Channel Odor Sensor Array

Deep probability multi-view feature learning for data clustering

A majorization–minimization based solution to penalized nonnegative matrix factorization with orthogonal regularization

In recent years, nonnegative matrix factorization (NMF) with volume regularization has been shown to be a powerful identifiable model; for example for hyperspectral unmixing, document classification, community detection and hidden Markov models. In this paper, we show that minimum-volume NMF (min-vol NMF) can also be used when the basis matrix is rank deficient, which is a reasonable scenario for some real-world NMF problems (e.g., for unmixing multispectral images). We propose an alternating fast projected gradient method for min-vol NMF and illustrate its use on rank-deficient NMF problems; namely a synthetic data set and a multispectral image.

Sparse nonnegative matrix factorization with ℓ0-constraints

Visual tracking is an open issue in computer vision. Designing an robust tracking algorithm is a challenging problem due to complicated appearance variations, such as partial occlusion, illumination variations, fast motion and out-of-plane rotation. Some tracking algorithms use a set of templates to represent a target candidate. Such representations are not robust to drastic appearance variations. In order to alleviate the influence of appearance variations and outliers, we propose a novel tracking algorithm based on a robust Bayesian matrix factorization, where sample data is decomposed into a basis matrix and a coefficient matrix. The sample data is consist of previous tracking results. A column vector is stacked by a tracking result in a frame. A target candidate is represented by a linear combinations of the columns in the basis matrix. The matrix factorization can capture the correlation between different features in sample data. Also the appearance variations in tracking processing can be learnt in matrix factorization. Experimental results demonstrate the appearance models is effective and the proposed tracker in a particle filter tracking framework is robust to outliers and complicated appearance variations.

Traditional Nonnegative Matrix Factorization (NMF) is a linear and unsupervised algorithm. This would limit the classification power of NMF for the complicated data. To overcome the above limitations of NMF, this paper proposes a novel supervised and nonlinear NMF algorithm based on kernel theory and discriminant analysis. We incorporate the class label information into the decomposition of NMF in the Reproducing Kernel Hilbert Space (RKHS). A new iterative algorithm for NMF is derived and the objective function is non-increasing under the update rules. The proposed method is evaluated on the ORL and Yale face databases. The experimental results demonstrate the the proposed method is superior to the state of-the-art algorithms.

Nonnegative matrix factorization (NMF) is the problem of approximating an input nonnegative matrix, $V$, as the product of two smaller nonnegative matrices, $W$ and $H$. In this paper, we introduce a general framework to design multiplicative updates (MU) for NMF based on $\beta$-divergences ($\beta$-NMF) with disjoint equality constraints, and with penalty terms in the objective function. By disjoint, we mean that each variable appears in at most one equality constraint. Our MU satisfy the set of constraints after each update of the variables during the optimization process, while guaranteeing that the objective function decreases monotonically. We showcase this framework on three NMF models, and show that it competes favorably the state of the art: (1)~$\beta$-NMF with sum-to-one constraints on the columns of $H$, (2) minimum-volume $\beta$-NMF with sum-to-one constraints on the columns of $W$, and (3) sparse $\beta$-NMF with $\ell_2$-norm constraints on the columns of $W$.

In this paper, we present a novel muscle synergy extraction method based on multivariate curve resolution–alternating least squares (MCR-ALS) to overcome the limitation of the nonnegative matrix factorization (NMF) method for extracting non-sparse muscle synergy, and we study its potential application for evaluating motor function of stroke survivors. Nonnegative matrix factorization (NMF) is the most widely used method for muscle synergy extraction. However, NMF is susceptible to components’ sparseness and usually provides inferior reliability, which significantly limits the promotion of muscle synergy. In this study, MCR-ALS was employed to extract muscle synergy from electromyography (EMG) data. Its performance was compared with two other matrix factorization algorithms, NMF and self-modeling mixture analysis (SMMA). Simulated data sets were utilized to explore the influences of the sparseness and noise on the extracted synergies. As a result, the synergies estimated by MCR-ALS were the most similar to true synergies as compared with SMMA and NMF. MCR-ALS was used to analyze the muscle synergy characteristics of upper limb movements performed by healthy (n = 11) and stroke (n = 5) subjects. The repeatability and intra-subject consistency were used to evaluate the performance of MCR-ALS. As a result, MCR-ALS provided much higher repeatability and intra-subject consistency as compared with NMF, which were important for the reliability of the motor function evaluation. The stroke subjects had lower intra-subject consistency and seemingly had more synergies as compared with the healthy subjects. Thus, MCR-ALS is a promising muscle synergy analysis method for motor function evaluation of stroke patients.

Text often expresses the writer's emotional state or evokes emotions in the reader. The nature of emotional phenomena like reading and writing can be interpreted in different ways and represented with different computational models. Affective computing (AC) researchers often use a categorical model in which text data are associated with emotional labels. We introduce a new way of using normative databases as a way of processing text with a dimensional model and compare it with different categorical approaches. The approach is evaluated using four data sets of texts reflecting different emotional phenomena. An emotional thesaurus and a bag‐of‐words model are used to generate vectors for each pseudo‐document, then for the categorical models three dimensionality reduction techniques are evaluated: Latent Semantic Analysis (LSA), Probabilistic Latent Semantic Analysis (PLSA), and Non‐negative Matrix Factorization (NMF). For the dimensional model a normative database is used to produce three‐dimensional vectors (valence, arousal, dominance) for each pseudo‐document. This three‐dimensional model can be used to generate psychologically driven visualizations. Both models can be used for affect detection based on distances amongst categories and pseudo‐documents. Experiments show that the categorical model using NMF and the dimensional model tend to perform best.

Positron emission tomography (PET) is an important imaging technique to visualize a number of functions in the brain or human body. For reconstructing PET images from the sinogram data, an inverse problem has to be solved using numerical optimizations such as expectation-maximization (EM)-based methods. However, the standard EM method suffers from measurement noise added in the sinogram data. In this paper, we propose a new simultaneous PET image reconstruction and parts extraction method using constrained non-negative matrix factorization. In contrast that the many existing methods reconstruct a single PET image independently, we reconstruct the time-series of PET images simultaneously from the time-series of sinograms using non-negative matrix factorization. Furthermore, we impose the smoothness constraint for the temporal feature, and the exclusive LASSO-based sparseness constraint for the spatial feature for robust image reconstruction and physically meaningful feature extraction.