Space‐charge effects with mass‐selective axial ejection from a linear quadrupole ion trap

A theoretical method was proposed in this work to study space charge effects in quadrupole ion traps, including ion trapping, ion motion frequency shift, and nonlinear effects on ion trajectories. The spatial distributions of ion clouds within quadrupole ion traps were first modeled for both 3D and linear ion traps. It is found that the electric field generated by space charge can be expressed as a summation of even-order fields, such as quadrupole field, octopole field, etc. Ion trajectories were then solved using the harmonic balance method. Similar to high-order field effects, space charge will result in an "ocean wave" shape nonlinear resonance curve for an ion under a dipolar excitation. However, the nonlinear resonance curve will be totally shifted to lower frequencies and bend towards ion secular frequency as ion motion amplitude increases, which is just the opposite effect of any even-order field. Based on theoretical derivations, methods to reduce space charge effects were proposed.

Observation of higher order quadrupole excitation frequencies in a linear ion trap

The forward scan (i.e. an increasing RF voltage ramp for the mass-selective instability scan) is commonly used as an analytical scan for ion detection with quadrupole ion trap instruments. A number of phenomena have been observed while using this scan technique. These include space charge effects resulting in the delayed ejection of ions from the ion trap, and the fragmentation of fragile ions producing very broad peaks. Here the use of a reverse scan (i.e. a decreasing RF voltage ramp) is examined to determine the effect of the above phenomena in this acquisition method. With regard to space charge effects, the apparent reduction of the carbon isotope spacing below one Thomson (for singly charged ions) that is observed with the forward scan is now replaced by an apparent increase in this spacing. The reverse scan, which optimizes at lower axial modulation ejection voltages than the forward scan, allows for the intact ejection of fragile ions under its typical operating conditions whereas the forward scan results in fragmentation. Reducing the axial modulation voltage for the ejection of ions in the forward scan results in less dissociation of the fragile ions during ion ejection, but with the observation of ghost peaks due to incomplete ejection of all of the ions at the resonance ejection condition. While performing the reverse scan experiment, the formation of product ions from dissociation of the MH(+) ion has also been observed.

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTIon Remeasurement in the Radio Frequency Quadrupole Ion TrapDouglas E. Goeringer, Richard I. Crutcher, and Scott A. McLuckeyCite this: Anal. Chem. 1995, 67, 22, 4164–4169Publication Date (Print):November 15, 1995Publication History Published online1 May 2002Published inissue 15 November 1995https://pubs.acs.org/doi/10.1021/ac00118a020https://doi.org/10.1021/ac00118a020research-articleACS PublicationsRequest reuse permissionsArticle Views225Altmetric-Citations29LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts

The extent of internal energy deposition into ions upon storage, radial ejection, and detection using a linear quadrupole ion trap mass spectrometer is investigated as a function of ion size (m/z 59 to 810) using seven ion-molecule thermometer reactions that have well characterized reaction entropies and enthalpies. The average effective temperatures of the reactants and products of the ion-molecule reactions, which were obtained from ion-molecule equilibrium measurements, range from 295 to 350 K and do not depend significantly on the number of trapped ions, m/z value, ion trap q z value, reaction enthalpy/entropy, or the number of vibrational degrees of freedom for the seven reactions investigated. The average of the effective temperature values obtained for all seven thermometer reactions is 318 ± 23 K, which indicates that linear quadrupole ion trap mass spectrometers can be used to study the structure(s) and reactivity of ions at near ambient temperature.

Ion-number-density-dependent effects on hyperfine transition of trapped 199Hg+ ions in quadrupole linear ion traps

Improving the analytical performance of linear ion traps (LITs) is crucial for the advancement of high-performance LIT mass spectrometers. In this study, a double resonant excitation method was employed in an asymmetric LIT to achieve high ion unidirectional ejection efficiency and enhanced mass resolution. The asymmetric trapping field was generated by stretching one x electrode with a distance α. The double resonant excitation was achieved by applying an alternating voltage out of phase and a supplementary alternating voltage in phase to the x and y electrode pairs of the LIT, respectively. Numerical simulations of ion trajectories were performed to validate the effectiveness of this method. The mass resolution of the asymmetric LIT with double resonant excitation could be improved to ~3800, which was over two times compared to that with only dipolar resonant excitation, while both reached ~90% in ion unidirectional ejection efficiency. By employing the double resonant excitation method, the mass resolution could be improved significantly in the asymmetric LIT, while maintaining a considerably high ion unidirectional ejection efficiency. This method might provide a general solution for enhancing ion detection efficiency and mass resolution of LIT mass spectrometers.

Ion/molecule reactions of dimethylamine with protonated analytes facilitate the identification of tertiary N-oxide functionalities in a linear quadrupole ion trap mass spectrometer

Resonance excitation in a quadrupole ion trap: modification of competing dissociative channel yields

Surface-induced dissociation of molecular ions in a quadrupole ion trap mass spectrometer

Dipole excitation of ions in linear radio frequency quadrupole ion traps with added multipole fields

A radial dipolar excitation has been applied to a hyperbolic Paul trap with a segmented ring electrode. In addition, this configuration allowed the generation of an elliptical Paul trap by superimposing the RF trapping field with an electrostatic azimuthally quadrupolar field. The changes in the radial ion motions with respect to the conventional Paul trap are discussed and investigated experimentally. As expected, the formerly degenerated radial eigenfrequencies $\nu_{r}$ of the standard Paul trap split into two separate resonances at $\nu_{x}$ and $\nu_{y}$ , while the axial eigenfrequency $\nu_{z}$ remains unaffected. The new trap design adds flexibility and extends the range of applications of Paul traps.

Hepatitis C virus (HCV) replication complex resides in detergent-insoluble subcellular domains or lipid rafts. We used two proteomics approaches to characterize the protein content of lipid rafts isolated from Huh7 cells and its modification upon HCV replication. Using two-dimensional electrophoresis and mass spectrometry, we identified approximately 100 protein spots in the isolated lipid rafts; among them, 39 were reproducibly modified in HCV replicon cell lines as compared with control cell lines. We also used stable isotope labeling by amino acids in cell culture (SILAC) combined with one-dimensional electrophoresis separation and mass spectrometry. Using this approach, we identified 1036 individual proteins based on peptides selected with at least 95% confidence; among them, 413 proteins were identified with at least two peptides. Quantification analysis identified 150 proteins modified by at least 2.5-fold (110 up-regulated and 40 down-regulated) in HCV-replicating cells compared with controls. Protein identifications and quantifications obtained by both proteomics approaches were largely concordant. Modulated proteins included a majority of proteins involved in vesicular and protein trafficking and in cell signaling. Remarkably for a large number of proteins, their up-regulation in lipid rafts of HCV replicon cells was due to their relocalization. By using small interfering RNAs directed to the modulated small GTPases Cdc42 and RhoA, we observed an increase in HCV replication, whereas reduction of syntaxin 7 expression resulted in decreased replication of HCV. Our findings indicate that protein subcellular relocalization occurs in HCV-containing cells that can directly affect HCV replication.

The products of fast pyrolysis that first leave the hot pyrolysis surface were identified for three G‐lignin model compounds, a trimer, a tetramer and a synthetic polymer, all containing β‐O‐4 linkages, by using a very fast heating pyrolysis probe coupled with a linear quadrupole ion trap mass spectrometer or a linear quadrupole ion trap coupled with an orbitrap detector. High‐resolution measurements were used to determine the elemental compositions of the deprotonated pyrolysis products. Their structures were examined using collision‐activated dissociation experiments and via comparison to the dissociation reactions of ionized authentic compounds. The initial pyrolysis products for all model compounds range from monomers to tetramers. Even for the polymer, no products larger than tetramers were observed. None of the products were radicals. The observed trimers and tetramers were formed directly from the intact model compounds rather than from repolymerization of initially formed monomers. Both the observed product distributions and quantum chemical calculations suggest that the mechanism(s) of the major reactions occurring under the conditions employed here are Maccoll and/or retro‐ene eliminations rather than radical reactions. Based on a comparison of the behavior of the smaller β‐O‐4 model compounds to the synthetic β‐O‐4 lignin polymer, the smaller model compounds appear to be good surrogates for further studies of the mechanisms of fast pyrolysis of lignin.

Matrix-assisted laser desorption/ionization—boundary-activated dissociation of peptide ions in a quadrupole ion trap