• Cite Icon30
  • https://doi.org/10.1111/sjos.12053Copy DOI Icon

Sparse Markov Chains for Sequence Data

Show More
  • Abstract
  • Literature Map
  • References
  • Citations
  • Similar Papers
Abstract

ABSTRACTFinite memory sources and variable‐length Markov chains have recently gained popularity in data compression and mining, in particular, for applications in bioinformatics and language modelling. Here, we consider denser data compression and prediction with a family of sparse Bayesian predictive models for Markov chains in finite state spaces. Our approach lumps transition probabilities into classes composed of invariant probabilities, such that the resulting models need not have a hierarchical structure as in context tree‐based approaches. This can lead to a substantially higher rate of data compression, and such non‐hierarchical sparse models can be motivated for instance by data dependence structures existing in the bioinformatics context. We describe a Bayesian inference algorithm for learning sparse Markov models through clustering of transition probabilities. Experiments with DNA sequence and protein data show that our approach is competitive in both prediction and classification when compared with several alternative methods on the basis of variable memory length.

Similar Papers
  • PDF
  • Research Article
  • Citations26

SMOTE-Boost-based sparse Bayesian model for flood prediction

  • Apr 15, 2020
  • EURASIP Journal on Wireless Communications and Networking
  • Yirui Wu +2
  • Conference Article
  • Citations5

Modulation Classification of MPSK Signals Based on Relevance Vector Machines

  • Dec 01, 2009
  • Xin Zhou +2
  • Research Article
  • Citations16

Feature fusion and distillation embedded sparse Bayesian learning model for in-situ foreknowledge of robotic machining errors

  • Oct 19, 2023
  • Journal of Manufacturing Systems
  • Shengqiang Zhao +6
  • Book Chapter

Markov Chains with Random Transition Probabilities

  • Jan 01, 2002
  • Anatoli V Skorokhod +2
  • Research Article
  • Citations5

Posterior impropriety of some sparse Bayesian learning models

  • Jan 14, 2021
  • Statistics & Probability Letters
  • Anand Dixit +1
  • Research Article
  • Citations6

A novel polynomial dimension decomposition method based on sparse Bayesian learning and Bayesian model averaging

  • Nov 20, 2021
  • Mechanical Systems and Signal Processing
  • Wanxin He +2
  • Conference Article
  • Citations5

Compressed Multi-view Imaging with Joint Reconstruction

  • Mar 01, 2011
  • Changjun Fu +2
  • Book Chapter
  • Citations2

Markov Models

  • Jan 01, 2012
  • Luminita Manuela Bujorianu
  • Research Article

Adjoining batch Markov arrival processes of a Markov chain

  • Jan 01, 2018
  • Acta Mathematicae Applicatae Sinica, English Series
  • Xiao-Yun Mo +2
  • Research Article
  • Citations148

Posterior contraction in sparse Bayesian factor models for massive covariance matrices

  • Jun 01, 2014
  • The Annals of Statistics
  • Debdeep Pati +3
  • Research Article
  • Citations2

Statistics for Continuous Time Markov Chains, a Short Review

  • Apr 08, 2025
  • Axioms
  • Manuel L Esquível +1
  • Research Article
  • Citations15

Conditional ergodicity in infinite dimension

  • Nov 01, 2014
  • The Annals of Probability
  • Xin Thomson Tong +1
  • Research Article
  • Citations5

Hyperspectral image unmixing using a sparse Bayesian model

  • Jul 03, 2014
  • Remote Sensing Letters
  • F Chen +2
  • Research Article
  • Citations2

Agent Identification Using a Sparse Bayesian Model

  • Oct 01, 2011
  • IEEE Sensors Journal
  • Huiping Duan +4
  • PDF
  • Research Article
  • Citations17

Markov chains under nonlinear expectation

  • Nov 08, 2020
  • Mathematical Finance
  • Max Nendel
Cactus Communications logo

Copyright 2026 Cactus Communications. All rights reserved.