Sparsity-Constrained Coupled Nonnegative Matrix–Tensor Factorization for Hyperspectral Unmixing

Nonnegative matrix factorization and I-divergence alternating minimization

Nonnegative matrix factorizations are often encountered in data mining applications where they are used to explain datasets by a small number of parts. For many of these applications it is desirable that there exists a unique nonnegative matrix factorization up to trivial modifications given by scalings and permutations. This means that model parameters are uniquely identifiable from the data. Rigidity theory of bar and joint frameworks is a field that studies uniqueness of point configurations given some of the pairwise distances. The goal of this paper is to use ideas from rigidity theory to study uniqueness of nonnegative matrix factorizations in the case when nonnegative rank of a matrix is equal to its rank. We characterize infinitesimally rigid nonnegative factorizations, prove that a nonnegative factorization is infinitesimally rigid if and only if it is locally rigid and a certain matrix achieves its maximal possible Kruskal rank, and show that locally rigid nonnegative factorizations can be extended to globally rigid nonnegative factorizations. These results give so far the strongest necessary condition for the uniqueness of a nonnegative factorization. We also explore connections between rigidity of nonnegative factorizations and boundaries of the set of matrices of fixed nonnegative rank. Finally we extend these results from nonnegative factorizations to completely positive factorizations.

Nonnegative matrix factorization (NMF) provides a lower rank approximation of a matrix by a product of two nonnegative factors. NMF has been shown to produce clustering results that are often superior to those by other methods such as K-means. In this paper, we provide further interpretation of NMF as a clustering method and study an extended formulation for graph clustering called Symmetric NMF (SymNMF). In contrast to NMF that takes a data matrix as an input, SymNMF takes a nonnegative similarity matrix as an input, and a symmetric nonnegative lower rank approximation is computed. We show that SymNMF is related to spectral clustering, justify SymNMF as a general graph clustering method, and discuss the strengths and shortcomings of SymNMF and spectral clustering. We propose two optimization algorithms for SymNMF and discuss their convergence properties and computational efficiencies. Our experiments on document clustering, image clustering, and image segmentation support SymNMF as a graph clustering method that captures latent linear and nonlinear relationships in the data.

Nonnegative matrix factorization (NMF), which can lead to nonsubtractive parts-based representation, has been demonstrated to be effective for dimensionality reduction of hyperspectral imagery (HSI). However, existing NMF methods applied to HSI use only a single spectral feature and do not take into consideration spatial information, such as texture or morphological features, while it has been widely acknowledged that exploiting multiple features can improve performance. Consequently, a variant of orthogonal NMF, which can not only achieve a nonnegative factorization but also exploit the complementary information that arises among heterogeneous features, is proposed for hyperspectral dimensionality reduction. The proposed method, which couples orthogonal NMF with a previous multiple-features-combining algorithm, yields a discriminative low-dimensional feature representation that matches the intuition that parts should sum to produce a whole. An efficient multiplicative updating procedure is derived, and its local convergence is guaranteed theoretically. Experimental results on two hyperspectral data sets demonstrate the effectiveness of the proposed method.

Non-negative Matrix Factorization (NMF) has been frequently applied to image feature extraction and clustering. Especially in image clustering tasks, it can achieve the similar or better performance than most of the matrix factorization algorithms due to its parts-based representations in the brain. However, the features extracted by NMF are not sparse and localized enough and the error of factorization is not small enough. Semi-tensor product of matrices (STP) is a novel operation of matrix multiplication, it is a generalization of the conventional matrix product for allowing the dimensions of factor matrices to be unequal. STP can manage the data hierarchically and the inverse process of STP can separate the data hierarchically. Based on this character of STP, we propose the Non-Negative Matrix Semi-Tensor Factorization (NMSTF). In this algorithm, we use the inverse process of Semi-Tensor Product of matrices for non-negative matrix factorization. This algorithm effectively optimizes the above two problems in NMF. While achieving similar even better performance on image clustering tasks, the size of features extracted by STNMF is at least 50 % smaller than the ones’ extracted by NMF and the error of factorization reduces 30 % in average.

We have studied the feature extraction from sea ice SAR images based on non-negative factorization methods. The methods reported here are the sparseness-constrained non-negative matrix factorization (SC-NMF) and Non-negative tensor factorization (NTF). The studies performed show that these methods can be used to extract meaningful features from SAR images and that they can be used in sea ice SAR classification.

Many spectral unmixing approaches ranging from geometry, algebra to statistics have been proposed, in which nonnegative matrix factorization (NMF)-based ones form an important family. The original NMF-based unmixing algorithm loses the spectral and spatial information between mixed pixels when stacking the spectral responses of the pixels into an observed matrix. Therefore, various constrained NMF methods are developed to impose spectral structure, spatial structure, and spectral-spatial joint structure into NMF to enforce the estimated endmembers and abundances preserve these structures. Compared with matrix format, the third-order tensor is more natural to represent a hyperspectral data cube as a whole, by which the intrinsic structure of hyperspectral imagery can be losslessly retained. Extended from NMF-based methods, a matrix-vector nonnegative tensor factorization (NTF) model is proposed in this paper for spectral unmixing. Different from widely used tensor factorization models, such as canonical polyadic decomposition CPD) and Tucker decomposition, the proposed method is derived from block term decomposition, which is a combination of CPD and Tucker decomposition. This leads to a more flexible frame to model various application-dependent problems. The matrix-vector NTF decomposes a third-order tensor into the sum of several component tensors, with each component tensor being the outer product of a vector (endmember) and a matrix (corresponding abundances). From a formal perspective, this tensor decomposition is consistent with linear spectral mixture model. From an informative perspective, the structures within spatial domain, within spectral domain, and cross spectral-spatial domain are retreated interdependently. Experiments demonstrate that the proposed method has outperformed several state-of-the-art NMF-based unmixing methods.

Nonnegative matrix factorization(NMF) has been applied to hyperspectral unmixing in recent years. Different constraints based on geometrical or statistical properties of endmember and abundance are incorporated into NMF model to improve unmixing result. In this paper, a new regularizer based on spectral cluster information is proposed to strengthen the constrained relationship between original image and abundance maps. The new algorithm makes abundances of similar pixels close and abundances of dissimilar pixels be separated completely. Additionally, L 1/2 sparsity constraint is adopted to make the solutions sparse. Comparative results on real and synthetic hyperspectral datasets prove our proposed method could improve the hyperspectral unmixing accuracy.

In this letter, we consider the nonnegative matrix factorization (NMF) problem and several NMF variants. Two approaches based on DC (difference of convex functions) programming and DCA (DC algorithm) are developed. The first approach follows the alternating framework that requires solving, at each iteration, two nonnegativity-constrained least squares subproblems for which DCA-based schemes are investigated. The convergence property of the proposed algorithm is carefully studied. We show that with suitable DC decompositions, our algorithm generates most of the standard methods for the NMF problem. The second approach directly applies DCA on the whole NMF problem. Two algorithms-one computing all variables and one deploying a variable selection strategy-are proposed. The proposed methods are then adapted to solve various NMF variants, including the nonnegative factorization, the smooth regularization NMF, the sparse regularization NMF, the multilayer NMF, the convex/convex-hull NMF, and the symmetric NMF. We also show that our algorithms include several existing methods for these NMF variants as special versions. The efficiency of the proposed approaches is empirically demonstrated on both real-world and synthetic data sets. It turns out that our algorithms compete favorably with five state-of-the-art alternating nonnegative least squares algorithms.

Hyperspectral unmixing (HU) is a research hotspot of hyperspectral remote sensing technology. As a classical HU method, the nonnegative matrix factorization (NMF) unmixing method can decompose an observed hyperspectral data matrix into the product of two nonnegative matrices, i.e., endmember and abundance matrices. Because the objective function of NMF is the traditional least-squares function, NMF is sensitive to noise. In order to improve the robustness of NMF, this paper proposes a maximum likelihood estimation (MLE) based NMF model (MLENMF) for unmixing of hyperspectral images (HSIs), which substitutes the least-squares objective function in traditional NMF by a robust MLE-based loss function. Experimental results on a simulated and two widely used real hyperspectral data sets demonstrate the superiority of our MLENMF over existing NMF methods.

Non-negative matrix factorization (NMF) has been one of the most popular methods for feature learning in the field of machine learning and computer vision. Most existing works directly apply NMF on high-dimensional image datasets for computing the effective representation of the raw images. However, in fact, the common essential information of a given class of images is hidden in their low rank parts. For obtaining an effective low-rank data representation, we in this paper propose a non-negative low-rank matrix factorization (NLMF) method for image clustering. For the purpose of improving its robustness for the data in a manifold structure, we further propose a graph regularized NLMF by incorporating the manifold structure information into our proposed objective function. Finally, we develop an efficient alternating iterative algorithm to learn the low-dimensional representation of low-rank parts of images for clustering. Alternatively, we also incorporate robust principal component analysis into our proposed scheme. Experimental results on four image datasets reveal that our proposed methods outperform four representative methods.

Non-negative matrix factorization (NMF) has found numerous applications, due to its ability to provide interpretable decompositions. Perhaps surprisingly, existing results regarding its uniqueness properties are rather limited, and there is much room for improvement in terms of algorithms as well. Uniqueness and computational aspects of NMF are revisited here from a geometrical point of view. Both symmetric and asymmetric NMF are considered, the former being tantamount to element-wise non-negative square-root factorization of positive semidefinite matrices. New and insightful uniqueness results are derived, e.g., it is shown that a sufficient condition for uniqueness is that the conic hull of the latent factors is a superset of a particular second-order cone. Checking this is shown to be NP-complete; yet it offers insights on latent sparsity, as is also shown in a new necessary condition, to a smaller extent. On the computational side, a new efficient algorithm for symmetric NMF is proposed which uses Procrustes rotations. Simulation results show promising performance with respect to the state-of-art. The new algorithm is also applied to a clustering problem for co-authorship data, yielding meaningful and interpretable results.

Hyperspectral unmixing is an important technique for analyzing remote sensing images which aims to obtain a collection of endmembers and their corresponding abundances. In recent years, non-negative matrix factorization (NMF) has received extensive attention due to its good adaptability for mixed data with different degrees. The majority of existing NMF-based unmixing methods are developed by incorporating additional constraints into the standard NMF based on the spectral and spatial information of hyperspectral images. However, they neglect to exploit the nature of imbalanced pixels included in the data, which may cause the pixels mixed with imbalanced endmembers to be ignored, and thus the imbalanced endmembers generally cannot be accurately estimated due to the statistical property of NMF. To exploit the information of imbalanced samples in hyperspectral data during the unmixing procedure, in this paper, a cluster-wise weighted NMF (CW-NMF) method for the unmixing of hyperspectral images with imbalanced data is proposed. Specifically, based on the result of clustering conducted on the hyperspectral image, we construct a weight matrix and introduce it into the model of standard NMF. The proposed weight matrix can provide an appropriate weight value to the reconstruction error between each original pixel and the reconstructed pixel in the unmixing procedure. In this way, the adverse effect of imbalanced samples on the statistical accuracy of NMF is expected to be reduced by assigning larger weight values to the pixels concerning imbalanced endmembers and giving smaller weight values to the pixels mixed by majority endmembers. Besides, we extend the proposed CW-NMF by introducing the sparsity constraints of abundance and graph-based regularization, respectively. The experimental results on both synthetic and real hyperspectral data have been reported, and the effectiveness of our proposed methods has been demonstrated by comparing them with several state-of-the-art methods.

In this work, we will consider the dimension reduction of the set of time series, such as economic data, to find the meaningful basis vector for the set of data, and indicate which data use which basis vector. Usually each of the time series is analyzed independently in economics but here we will analyze the set of time series simultaneously. Since some of the economic data are measured as positive values and we want to decompose them as a mixture of the parts, we will apply non-negative matrix factorization to the economic data. Non-negative matrix factorization can compress dimensions by approximating a non-negative matrix with the product of two non-negative matrices. The two non-negative matrices are called the coefficient matrix and the basis matrix, and the basis matrix can be considered as a dimensionally compressed matrix. If the standard non-negative matrix factorization is used for economic data, the basis matrix may not be smooth. We think that the basis vectors should be smooth except a few special economical incidents. In the proposed method, a Graph-based non-negative matrix factorization is introduced to regularize the basis matrix of the time series. A path graph for representing the time series of economic data is incorporated into the non-negative matrix factorization as regularization. As a result, basis vectors that maintains the time series of economic data are decomposed. Furthermore, we propose to introduce a sparsity in the non-negative matrix factorization. Traditionally, the sparsity incorporated into non-negative matrix factorization has been used for basis vectors. However, the proposed method introduces the sparsity for coefficient vectors. Thus the proposed method, which simultaneously incorporates the sparsity for the coefficient vectors and the smoothness for the basis vectors, can extract the smooth basis vectors and the original economical data are approximated as the weighted sum of the few bases vectors. This allows us to discover economic trends and the best-fit trends for each data at the same time.

Nonnegative matrix factorization (NMF) based hyperspectral unmixing aims at estimating pure spectral signatures and their fractional abundances at each pixel. During the past several years, manifold structures have been introduced as regularization constraints into NMF. However, most methods only consider the constraints on abundance matrix while ignoring the geometric relationship of endmembers. Although such relationship can be described by traditional graph construction approaches based on k-nearest neighbors, its accuracy is questionable. In this paper, we propose a novel hyperspectral unmixing method, namely NMF with endmember sparse graph learning, to tackle the above drawbacks. This method first integrates endmember sparse graph structure into NMF, then simultaneously performs unmixing and graph learning. It is further extended by incorporating abundance smoothness constraint to improve the unmixing performance. Experimental results on both synthetic and real datasets have validated the effectiveness of the proposed method.