Accurate identification of cryptic slug taxa of the Arion subfuscus/fuscus complex by PCR-RFLP (Pulmonata: Arionidae)
Shell characters (e.g. colour, banding pattern, size, shape) are commonly used to discriminate among closely related gastropod species. However, in slugs the shell is internal, often reduced and taxonomically uninformative. Therefore, body colour pattern and the size and shape of the (proximal) genitalia are the most important taxonomic markers in slugs. However, body colour and the development of stylommatophoran reproductive organs is subject to considerable intraspecific, seasonal and physiological variation. The identification of immature slugs is therefore often especially problematic. Two biological species of land slugs of the arionid subgenus Mesarion, viz. Arion subfuscus (Draparnaud, 1805) and A. fuscus (Muller, 1774), are very similar morphologically and have overlapping distributional ranges in northwestern Europe. Using allozyme data and gonad morphology, both species can be consistently delineated, even in sympatry. Arion fuscus is widespread throughout Central, North and East Europe, whereas A. subfuscus is restricted to West Europe. DNA sequence variation in nuclear (ITS-1) and mitochondrial (16S rDNA) genes revealed two major evolutionary lineages in A. fuscus, one in the Balkan region and another in the Alps and the rest of Europe, and five evolutionary lineages (S1-S5) with largely allopatric distributions in A. subfuscus. Two of the A. subfuscus lineages (S1 and S2) have overlapping distributions and may hybridize. Both allozyme electrophoresis and DNA sequencing have a number of disadvantages. Allozyme data can only be used when fresh or deep-frozen tissue is available. Although electrophoretic zymograms afford excellent markers for distinguishing A. subfuscus from A. fuscus, they do not allow accurate discrimination of the evolutionary lineages. The sequencing of DNA requires PCR-amplification using specific primers, followed by purification of the PCR product and sequencing of the amplified region. This procedure is often expensive and time-consuming. Hence, when large numbers of (immature) individuals have to be analysed, a rapid technique allowing reliable identifications of the cryptic species and lineages within the A. subfuscus/fuscus complex is needed. Here we present an easy and convenient molecular marker based on a restriction-fragment length digestion of a PCR-amplified 16S rDNA stretch (PCR-RFLP), which allows practical and reliable identification of the northwestern European evolutionary lineages within the A. subfuscus/fuscus complex. In the period February–May 2004, a total of 175 A. subfuscus/ fuscus individuals of different life-stages were collected in 25 Belgian and one German locality. A list of the localities and the number of individuals sampled per locality are available upon request. Individuals were frozen at 2808C. All specimens were identified by sequencing of the mitochondrial 16S rDNA and, whenever enough digestive gland tissue was available, using allozyme analysis. DNA sequencing was also used to assign all individuals to one of the evolutionary lineages. Then, a portion of foot tissue of each individual was digested for 2–5 h at 608C in 200 ml Taq DNA polymerase 10 buffer to which proteinase K was added. Afterwards, the unpurified samples were heated to 958C for 5 min. A part of the 16S rDNA gene was amplified with primers 16SAR (50CGCCTGTTTAWCAAAAACAT-30) and 16SBR (50CCGGTYTGAACTCAGATCAGATCAYGT-30) under the following conditions: 3 min at 978C, then 30 cycles of 45 s at 958C, 45 s at 468C and 1 min at 728C, and ending with 5 min at 728C. PCR reaction volumes contained 50 mM KCl, 10 mM Tris–HCl (pH 9.0 at 258C), 1% Triton X-100 (Promega), 5 mM 16SAR primer, 15 mM 16SBR primer, 200 mM of each dNTP, 1.75 units of Taq DNA polymerase (Promega), 1.5 mMMgCl2 and 1 ml of template DNA. Suitable restriction sites and enzymes were searched inWebcutter v.2.0. Two promising target enzymes (i.e. Ssp I an Mum I) were retained for further analysis. The amplification PCR products were digested with the two restriction enzymes (MBI Fermentas) as follows: 1.1 ml Gþ buffer [10 mM Tris–HCl (pH 7.5), 10 mM MgCl2, 50 mM NaCl and 0.1 mg/ml BSA], 0.1 ml Ssp I enzyme (10 units/1 ml) and 0.1 ml Mum I enzyme (10 units/1 ml) were added to 5 ml of PCR product and kept for 12 h at 378C. Then, the samples were kept at 658C for 20 min and afterwards stored at 48C. Restriction products were run on an ethidium bromide 3% agarose gel for 30 min at 125 V and photographed under ultraviolet light. Four taxa were found in the 26 populations: A. fuscus, A. subfuscus S1, S2 and S3. The number and the size of DNA fragments obtained after PCR-RFLP for each of these northwestern European taxa of the A. subfuscus/fuscus complex are summarized in Table 1. PCR-RFLP analysis of the 16S rDNA allowed unambiguous discrimination among the four taxa (Table 1, Fig. 1). The differences in sizes between the PCRamplified fragments and the fragments obtained after digestion are due to the presence of a restriction site in all taxa, and of a second restriction site in A. subfuscus S2 and S3. Arion fuscus showed one restriction site for Ssp I that yielded two fragments of approximately 435 bp and 30 bp. Arion subfuscus S1 also had one restriction site for Ssp I that resulted in two fragments of approximately 250 bp and 200 bp. Both A. subfuscus S2 and S3 had one restriction site for Ssp I and one for Mum I resulting in three fragments of approximately 285 bp, 160 bp and 30 bp in A. subfuscus S2 and 305 bp, 100 bp and 30 bp in A. subfuscus S3.
Read more