Nanoparticles are a potential source and carrier of nutrients and pollutants in aquatic ecosystems, yet the stability of nanoparticles in environmental conditions is poorly known. Here, we studied volcanic ash nanoparticles by simultaneous application of capillary zone electrophoresis and laser diffraction for determination of size, zeta-potential and long-term aggregation stability. Results show that volcanic ash nanoparticles remained stable for at least 28 days. Stability increases from pH 5.5 to 8.5. Zeta-potentials are − 56 mV at pH 7.2 and − 64 mV at pH 8.5. Findings imply that volcanic ash nanoparticles have a high potential for long-range transport of nutrient and toxic elements in surface waters. Moreover, the developed method allows direct conversion of electropherograms into particle size distributions.