Subspace clustering using a symmetric low-rank representation

Subspace clustering based on latent low rank representation with Frobenius norm minimization

BackgroundIdentifying different types of cancer based on gene expression data has become hotspot in bioinformatics research. Clustering cancer gene expression data from multiple cancers to their own class is a significance solution. However, the characteristics of high-dimensional and small samples of gene expression data and the noise of the data make data mining and research difficult. Although there are many effective and feasible methods to deal with this problem, the possibility remains that these methods are flawed.ResultsIn this paper, we propose the graph regularized low-rank representation under symmetric and sparse constraints (sgLRR) method in which we introduce graph regularization based on manifold learning and symmetric sparse constraints into the traditional low-rank representation (LRR). For the sgLRR method, by means of symmetric constraint and sparse constraint, the effect of raw data noise on low-rank representation is alleviated. Further, sgLRR method preserves the important intrinsic local geometrical structures of the raw data by introducing graph regularization. We apply this method to cluster multi-cancer samples based on gene expression data, which improves the clustering quality. First, the gene expression data are decomposed by sgLRR method. And, a lowest rank representation matrix is obtained, which is symmetric and sparse. Then, an affinity matrix is constructed to perform the multi-cancer sample clustering by using a spectral clustering algorithm, i.e., normalized cuts (Ncuts). Finally, the multi-cancer samples clustering is completed.ConclusionsA series of comparative experiments demonstrate that the sgLRR method based on low rank representation has a great advantage and remarkable performance in the clustering of multi-cancer samples.

Subspace clustering has important and wide applications in computer vision and pattern recognition. It is a challenging task to learn low-dimensional subspace structures due to the possible errors (e.g., noise and corruptions) existing in high-dimensional data. Recent subspace clustering methods usually assume a sparse representation of corrupted errors and correct the errors iteratively. However large corruptions in real-world applications can not be well addressed by these methods. A novel optimization model for robust subspace clustering is proposed in this paper. The objective function of our model mainly includes two parts. The first part aims to achieve a sparse representation of each high-dimensional data point with other data points. The second part aims to maximize the correntropy between a given data point and its low-dimensional representation with other points. Correntropy is a robust measure so that the influence of large corruptions on subspace clustering can be greatly suppressed. An extension of our method with explicit introduction of representation error terms into the model is also proposed. Half-quadratic minimization is provided as an efficient solution to the proposed robust subspace clustering formulations. Experimental results on Hopkins 155 dataset and Extended Yale Database B demonstrate that our method outperforms state-of-the-art subspace clustering methods.

Attention reweighted sparse subspace clustering

Multiview subspace clustering is one of the most widely used methods for exploiting the internal structures of multiview data. Most previous studies have performed the task of learning multiview representations by individually constructing an affinity matrix for each view without simultaneously exploiting the intrinsic characteristics of multiview data. In this article, we propose a multiview low-rank representation (MLRR) method to comprehensively discover the correlation of multiview data for multiview subspace clustering. MLRR considers symmetric low-rank representations (LRRs) to be an approximately linear spatial transformation under the new base, that is, the multiview data themselves, to fully exploit the angular information of the principal directions of LRRs, which is adopted to construct an affinity matrix for multiview subspace clustering, under a symmetric condition. MLRR takes full advantage of LRR techniques and a diversity regularization term to exploit the diversity and consistency of multiple views, respectively, and this method simultaneously imposes a symmetry constraint on LRRs. Hence, the angular information of the principal directions of rows is consistent with that of columns in symmetric LRRs. The MLRR model can be efficiently calculated by solving a convex optimization problem. Moreover, we present an intuitive fusion strategy for symmetric LRRs from the perspective of spectral clustering to obtain a compact representation, which can be shared by multiple views and comprehensively represents the intrinsic features of multiview data. Finally, the experimental results based on benchmark datasets demonstrate the effectiveness and robustness of MLRR compared with several state-of-the-art multiview subspace clustering algorithms.

Data clustering is an important research topic in data mining and signal processing communications. In all the data clustering methods, the subspace spectral clustering methods based on self expression model, e.g., the Sparse Subspace Clustering (SSC) and the Low Rank Representation (LRR) methods, have attracted a lot of attention and shown good performance. The key step of SSC and LRR is to construct a proper affinity or similarity matrix of data for spectral clustering. Recently, Laplacian graph constraint was introduced into the basic SSC and LRR and obtained considerable improvement. However, the current graph construction methods do not well exploit and reveal the non-linear properties of the clustering data, which is common for high dimensional data. In this paper, we introduce the classic manifold learning method, the Local Linear Embedding (LLE), to learn the non-linear structure underlying the data and use the learned local geometry of manifold as a regularization for SSC and LRR, which results the proposed LLE-SSC and LLE-LRR clustering methods. Additionally, to solve the complex optimization problem involved in the proposed models, an efficient algorithm is also proposed. We test the proposed data clustering methods on several types of public databases. The experimental results show that our methods outperform typical subspace clustering methods with Laplacian graph constraint.

Graph Regularized Residual Subspace Clustering Network for hyperspectral image clustering

Nonlinear subspace clustering by functional link neural networks

Advances made to the traditional clustering algorithms solves the various problems such as curse of dimensionality and sparsity of data for multiple attributes. The traditional H-K clustering algorithm can solve the randomness and apriority of the initial centers of K-means clustering algorithm. But when we apply it to high dimensional data it causes the dimensional disaster problem due to high computational complexity. All the advanced clustering algorithms like subspace and ensemble clustering algorithms improve the performance for clustering high dimension dataset from different aspects in different extent. Still these algorithms will improve the performance form a single perspective. The objective of the proposed model is to improve the performance of traditional H-K clustering and overcome the limitations such as high computational complexity and poor accuracy for high dimensional data by combining the three different approaches of clustering algorithm as subspace clustering algorithm and ensemble clustering algorithm with H-K clustering algorithm.

In this work, a robust subspace clustering algorithm is developed to exploit the inherent union-of-subspaces structure in the data for reconstructing missing measurements and detecting anomalies. Our focus is on processing an incessant stream of large-scale data such as synchronized phasor measurements in the power grid, which is challenging due to computational complexity, memory requirement, and missing and corrupt observations. In order to mitigate these issues, a low-rank representation (LRR) model-based subspace clustering problem is formulated that can handle missing measurements and sparse outliers in the data. Then, an efficient online algorithm is derived based on stochastic approximation. The convergence property of the algorithm is established. Strategies to maintain a representative yet compact dictionary for capturing the subspace structure are also proposed. The developed method is tested on both simulated and real phasor measurement unit (PMU) data to verify the effectiveness and is shown to significantly outperform existing algorithms based on simple low-rank structure of data.

Biomedical cell image contains different types of components. The segmentation of these components is essential for characterizing the overall structure of leucocytes. However, the task is challenging because the data generally possess irregular patterns, varying eccentricity and congestion of inter class substructures. In order to perform the automatic segmentation of leucocytes, many approaches in machine learning have been proposed. Most of the recent methods utilize k-means and fuzzy c-means algorithms. These methods suffer from the under-segmentation and the oversegmentation of data points. We have adopted an efficient Low Rank Representation (LRR) method for the segmentation of cell image patterns. Its overall segmentation performance is very high in comparison to the k-means and fuzzy c-means segmentation methods. It discriminates sub structures by incorporating multiple feature data into the joint representation matrix. The main improvements of our adopted approach, include the global geometric representation of different cell patterns and the control of different sources of noise in the data. Data points of the cell image are evolved with the basic assumption as x = m + n. Where x is the input observation, <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$m$</tex> is the set of data points that lies in the correct subspace and <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">$n$</tex> represent the noise in the data. The performance of the model was evaluated on the different types of medical images. It has reported the clustering accuracy of 97.98% on the biomedical database. Whereas an accuracy of 93.1 % was reported on ALL-IDB cell dataset.

This paper studies the subspace segmentation problem. Given a set of data points drawn from a union of subspaces, the goal is to partition them into their underlying subspaces they were drawn from. The spectral clustering method is used as the framework. It requires to find an affinity matrix which is close to block diagonal, with nonzero entries corresponding to the data point pairs from the same subspace. In this work, we argue that both sparsity and the grouping effect are important for subspace segmentation. A sparse affinity matrix tends to be block diagonal, with less connections between data points from different subspaces. The grouping effect ensures that the highly corrected data which are usually from the same subspace can be grouped together. Sparse Subspace Clustering (SSC), by using $\ell^1$-minimization, encourages sparsity for data selection, but it lacks of the grouping effect. On the contrary, Low-Rank Representation (LRR), by rank minimization, and Least Squares Regression (LSR), by $\ell^2$-regularization, exhibit strong grouping effect, but they are short in subset selection. Thus the obtained affinity matrix is usually very sparse by SSC, yet very dense by LRR and LSR. In this work, we propose the Correlation Adaptive Subspace Segmentation (CASS) method by using trace Lasso. CASS is a data correlation dependent method which simultaneously performs automatic data selection and groups correlated data together. It can be regarded as a method which adaptively balances SSC and LSR. Both theoretical and experimental results show the effectiveness of CASS.

Gene expression data is a kind of high dimension and small sample size data. The clustering accuracy of conventional clustering techniques is lower on gene expression data due to its high dimension. Because some subspace segmentation approaches can be better applied in the high-dimensional space, three new subspace clustering models for gene expression data sets are proposed in this work. The proposed projection subspace clustering models have projection sparse subspace clustering, projection low-rank representation subspace clustering and projection least-squares regression subspace clustering which combine projection technique with sparse subspace clustering, low-rank representation and least-square regression, respectively. In order to compute the inner product in the high-dimensional space, the kernel function is used to the projection subspace clustering models. The experimental results on six gene expression data sets show these models are effective.

We propose Ordered Subspace Clustering (OSC) to segment data drawn from a sequentially ordered union of subspaces. Current subspace clustering techniques learn the relationships within a set of data and then use a separate clustering algorithm such as NCut for final segmentation. In contrast our technique, under certain conditions, is capable of segmenting clusters intrinsically without providing the number of clusters as a parameter. Similar to Sparse Subspace Clustering (SSC) we formulate the problem as one of finding a sparse representation but include a new penalty term to take care of sequential data. We test our method on data drawn from infrared hyper spectral data, video sequences and face images. Our experiments show that our method, OSC, outperforms the state of the art methods: Spatial Subspace Clustering (SpatSC), Low-Rank Representation (LRR) and SSC.

Normal estimation is an essential step in point cloud based geometric processing, such as high quality point based rendering and surface reconstruction. In this paper, we present a clustering based method for normal estimation which preserves sharp features. For a piecewise smooth point cloud, the k-nearest neighbors of one point lie on a union of multiple subspaces. Given the PCA normals as input, we perform a subspace clustering algorithm to segment these subspaces. Normals are estimated by the points lying in the same subspace as the center point. In contrast to the previous method, we exploit the low-rankness of the input data, by seeking the lowest rank representation among all the candidates that can represent one normal as linear combinations of the others. Integration of Low-Rank Representation (LRR) makes our method robust to noise. Moreover, our method can simultaneously produce the estimated normals and the local structures which are especially useful for denoise and segmentation applications. The experimental results show that our approach successfully recovers sharp features and generates more reliable results compared with the state-of-theart.