Surface Enhanced Raman Scattering Enhancement Factors: A Comprehensive Study

Effect of cationic polyacrylamides on the aggregation and SERS performance of gold nanoparticles-treated paper

Rigorous justification of the | E| 4 enhancement factor in Surface Enhanced Raman Spectroscopy

The research reported in this thesis focuses on the fundamental science and engineering required for the fabrication and optimization of nanoparticles functionalized paper as Surface Enhanced Raman Scattering (SERS) bio-diagnostics platform. It addresses the current Sensitivity, Selectivity, Simplicity and Strength (4S) limitations of bioactive paper. The research vision is to develop a nanoparticles treated paper as a generic diagnostic platform to identify and quantify low concentrations of a specific (bio)analyte in aqueous solutions. The product concept is a “dipstick sensor” based on functionalized gold nanoparticle treated paper (AuNP paper) for SERS detection. Such AuNP paper test would allow the direct, rapid and easy detection of (bio)analyte molecules at very low concentrations (below the nanomolar range), making it suitable for biomedical analysis, such as in cancer detection. It also eliminates the tedious preparation of multiple reactants and washing steps involved in current technology such as the Enzyme-Linked Immunosorbent Assay (ELISA) based bioactive paper. Three parallel research length scales are investigated: nano, micro and macro. This involves quantifying the distribution and adsorption state of nanoparticles on paper (nanoscale). The effects of gold nanoparticles (AuNPs) concentration and 3-dimensional (3D) distribution profile on their adsorption and aggregation states on paper were explored. The surface coverage of AuNPs on paper scaled linearly with their concentration profile in solutions. The SERS performances of the AuNPs-treated papers were evaluated with a model Raman molecule, 4-aminothiophenol (4-ATP), and their SERS intensities increased linearly with the density of AuNPs on paper. The role of z-distribution of AuNPs within the bulk of paper was highlighted; their three-dimensional (3D) architecture was able to quench the background noise through interlayer plasmon coupling, thus amplifying the SERS signal. The retention and aggregation state of nanoparticles on paper was controlled to drastically optimize the SERS performance (microscale). Paper substrates were pre-treated with a series of cationic polyacrylamide (CPAM) solutions to control the AuNPs adsorption and aggregation state on paper. The CPAM pre-treated paper produced a more uniform distribution of AuNPs compared to untreated paper. CPAM chains which adsorbed on paper in a high loops and tails conformation promotes efficient bridging of AuNPs to achieve higher surface coverage and aggregation of AuNPs on paper. This configuration is favored by CPAM solutions of higher concentration, charge density and molecular weight. A simple approach to form and visualize polyelectrolyte-nanoparticles chaplet like structures on paper was developed by using negatively-charged gold nanoparticles (AuNPs) to decorate polymer chain of CPAM. AuNP chaplets were adsorbed in an opposite direction to the cellulose fibers and along the length of the CPAM molecules which were draped over the fibers. The effects of CPAM polymer concentration, charge density and molecular weight on the dimension of AuNP chaplets were quantified. Assembling nanometer-scale components (AuNPs) into micrometer-scale arrays (chaplets) on a porous paper substrate can be a promising strategy for low-cost nanoelectronics applications The SERS properties of nanoparticles functionalized paper were quantified and optimized (macroscale). The effect of CPAM concentration, charge density and molecular weight on the aggregation and surface coverage of AuNPs on paper and ultimately the SERS signal of 4-ATP was quantified. The optimized AuNPs-CPAM paper showed a higher sensitivity and Raman enhancement factor (EF), which was almost an order of magnitude higher than the untreated AuNPs paper. The effect of CPAM dissolution kinetic on the SERS reproducibility was also quantified. SERS reproducibility of AuNPs on CPAM pre-treated paper both increase with dissolution time of CPAM, as the heterogeneity of AuNP distribution and aggregate size decreases; increasing CPAM charge density accentuated this tendency. After the SERS efficiency towards the detection of model Raman molecule (4-ATP) was proven, AuNPs paper was upgraded by functionalizing the AuNPs with biotin/streptavidin assemblies for the detection of antibody-antigen binding. The modification of antibody local structure due to the interaction with antigen was detected. Evidence of antigen binding was elucidated from the SERS spectra, confirming the presence of antigen. Reproducible spectra features were observed for the functionalized AuNP papers which were exposed to different concentration of antigen; their intensity increased as a function of antigen concentration. By conducting these studies and merging these three length scales of research, a novel strategy to engineer AuNPs functionalized paper as a low-cost and generic SERS platform for bio-diagnostic applications was developed.

<p>Surface enhanced Raman spectroscopy (SERS) is undoubtedly a powerful tool as it allows one to overcome the major disadvantage of Raman spectroscopy: the weakness of its signal. Enhancement factors (EF) of up to 1010 make it even possible to detect single molecules. However, using it as an analytical tool to make reproducible, quantitative measurements has so far been difficult as the enhancement of the signal is "bought" at the expense of reproducibility: The larger the EF the more the reproducibility of the substrate suffers. This has been dubbed informally the "SERS uncertainty principle" by Natan [1]. While currently a lot of research effort is taking place at the high-EF-side of the spectrum and ever more sophisticated SERS substrates are being explored, in this thesis we would like to make a shift in paradigm and revisit SERS on flat metallic surfaces, which arguably constitute the simplest substrates available. To this end we will show their usefulness in making quantitative measurements and how they are an ideal platform for a new hybrid technique that combines reproducibility and extreme sensitivity with substantial EFs. For making quantitativemeasurements two examples are explored in a systematic way: in the first example (Chapter 2) the determination of an unknown, resonant Raman cross-section is demonstrated on flat metallic films (possibly with some surface roughness) and confirmed with measurements done on more commonly used SERS substrates. Here the quantitative measurement is made possible by introducing a reference molecule as a standard and having statistics as our main ally: even though we do not know the exact EF that the individual molecules experience on the various substrates, we know that on average both, the unknown sample and the known reference, experience the same. In the second example (Chapter 3) we use commercially available flat films for which we verify experimentally that surface roughness is irrelevant. By themselves these substrates yield no enhancement – in fact they even quench the Raman signal. Yet they allow us to calculate and control the electric field on the surface which enables us to determine the orientation of adsorbed molecules by using surface selection rules (SSR). While the first example is mostly empirical, the second one allows us to test our theoretical understanding of plasmonic systems with proper numerical calculations that are in excellent agreement with the observed data. Finally, in Chapter 4, we use those flat films in a special configuration (called the Kretschmann configuration) to excite Surface Plasmon-Polaritons (SPP). This not only allows us to combine the spatial homogeneity of a flat surface with useful EFs easily predicted fromtheory but also to combine the extreme sensitivity of surface plasmon resonance spectroscopy (SPRS) with the analytical power of SERS. It is not our intention to claim that the work presented here is the first attempt to do analytical work with SERS. Rather the newmethods presented in this thesis will add new strategies and tools to the current research effort while the detailed analysis will provide the means to understand them theoretically and in their historical context.</p>

This work investigates the effect of gold nanoparticle (AuNP) addition to paper substrate and examines the ability of these composite materials to amplify the surface enhanced Raman scattering (SERS) signal of a dye adsorbed. Paper has a three-dimensional (3D), porous, and heterogeneous morphology. The manner in which paper adsorbs the nanoparticles is crucial to its SERS properties, particularly with regards to aggregation. In this work, we sought to maintain the same degree of aggregation, while changing the concentration of nanoparticles deposited on paper. We achieved this by dipping paper into AuNP solutions of different, known concentration and found that the initial packing density of AuNPs in solutions was retained on paper with the same degree of aggregation. The surface coverage of AuNPs on paper was found to scale linearly to their concentration profile in solutions. The SERS performances of the AuNP-treated papers were evaluated with 4-aminothiophenol (4-ATP) as the Raman molecule, and their SERS intensities increased linearly with the AuNPs' concentration. Compared to AuNP-treated silicon, the Raman enhancement factor (EF) from paper was relatively higher due to a more uniform and greater degree of adsorption of AuNPs. The effect of the spatial distribution of AuNPs in their substrates on SERS activity was also investigated. In this experiment, the number of AuNPs was kept constant (a 1 μL droplet of AuNPs was deposited on all substrates), and the distribution profile of AuNPs was controlled by the nature of the substrate: paper, silicon, and hydrophobized paper. The AuNP droplet on paper showed the most reproducible and sensitive SERS signal. This highlighted the role of the z-distribution (through film) of AuNPs within the bulk of the paper, producing a 3D multilayer structure to allow inter- and intralayer plasmon coupling, and hence amplifying the SERS signal. The SERS performance of nanoparticle-functionalized paper can thus be optimized by controlling the 3D distribution of the metallic nanoparticles, and such control is critical if these systems are to be implemented as a low-cost and highly sensitive bioassay platform.

A versatile generation of plasmonic nanoparticle dimers for surface-enhanced Raman scattering (SERS) is presented by combining a DNA origami nanofork and spherical and nonspherical Au or Ag nanoparticles. Combining different nanoparticle species with a DNA origami nanofork to form DNA origami nanoantennas (DONAs), the plasmonic nanoparticle dimers can be optimized for a specific excitation wavelength in SERS. The preparation of such nanoparticle dimers is robust enough to enable the characterization of SERS intensities and SERS enhancement factors of dye-modified DONAs on a single dimer level by measuring in total several thousands of dimers from five different dimer designs, each functionalized with three different Raman reporter molecules and measured at four different excitation wavelengths. Based on these data, SERS enhancement factor (EF) distributions have been determined for each dimer design and excitation wavelengths. The structures and measurement conditions with the highest EFs are suitable for single-molecule SERS (SM-SERS), which is realized by placing single dye molecules into hot spots. We demonstrate that the probability of placing single molecules in a strongly enhancing hot spot for SM-SERS can be increased by using anisotropic nanoparticles with several sharp edges, such as nanoflowers. Combining a Ag nanoparticle with a Au particle in one dimer structure allows for a broadband excitation covering almost the whole visible range. The most versatile plasmonic dimer structure for SERS combines a spherical Ag nanoparticle with a Au nanoflower. Employing the discontinuous Galerkin time domain method, we numerically investigate the bare, symmetric dimers with respect to spectral and near-field properties, showing that, indeed, the nanoflowers induce multiple hot spots located at the edges which surpass the intensity of the spherical dimers, indicating the possibility for SM-SERS. The presented DONA structures and SERS data provide a robust basis for applying such designs as versatile SERS tags and as substrates for SM-SERS measurements.

Surface-enhanced Raman scattering (SERS) is a powerful technique for trace chemical analysis and single molecule detection in the application of biochemical monitoring and food safety due to its ability to enhance the Raman scattering of molecules near the metallic surface or nanostructures. Here, we present a comprehensive study of the SERS enhancement by the periodically nanostructured surface, where the thin film of silver is deposited onto the surface, except the sidewall of posts, of 1-D lamellar gratings with varying pitch to forming metal-dielectric composite nanostructures. By enhancing the localized and surface-propagating mode in the vicinity of the concaves, the SERS signal can be improved by amplifying the intensity of electric field and increasing the optical path length of the incident light. Experimental investigations show that the enhancement factor can be manipulated by varying the polarization of incident light and the pitch size of gratings. To demonstrate the SERS effects of the proposed structures, thin layers of benzoic acid, which is commonly used as a food preservative, are deposited on the SERS substrates by spin-coating a solution of benzoic acid and dried at room temperature. A Confocal Raman microscope with a 532 nm laser source is used to illuminate light and measure the Raman spectrum of benzoic acid. We demonstrate the Raman signal of benzoic acid can be enhanced on the order of 10 2 on the SERS substrates.

<p>This thesis focusses on a number of topics in surface enhanced Raman scattering (SERS). The aim of the undertaken research was to deepen the general understanding of the SERS effect and, thereby, to clarify some of the disputed issues, among them: What is the origin of the enhancement? What is the physical or chemical effect of 'salt activation' in SERS systems? Can we observe single-molecules using SERS? Can we determine the absorbate's orientation on the surface? In part one (chapters 1-3), as a general introduction, I start with a short overview of the Raman effect and its relation to other molecular spectroscopic effects (such as fluorescence, Rayleigh scattering, etc... ). Following these basic remarks, the surface enhancementmechanisms underlying SERS are explained (as a largely electromagnetic field enhancement) and are investigated theoretically on the canonicalmodel of a nanoscopic dimer of silver spheres. The second part (chapter 4) reports on the experimental investigation (electron microscopy, in-situ Raman measurements) of a typical real SERS system: Lee & Meisel silver colloids. An emphasis is put on the self-limiting aggregation kinetics which is observed in such systems after salt addition. This is also investigated and rationalised by means of Monte-Carlo simulations which are footed on empiric theoretical considerations for the interaction potential. Part three (chapter 5) contains a discussion of the early attempts on singlemolecule SERS and points out the shortcomings of the previously used ultra-lowconcentration approach. In response, an improved andmore rigorous approach is presented: Bi-Analyte SERS. Examplary applications of the technique are discussed. Within these experiments the capability of the technique to prove/disprove (with statistical soundness) single-molecule sensitivity in any SERS system is demonstrated, and single-molecule enhancement factors are derived. The last part (chapter 6) presents computational studies based on densityfunctional theory and its use in the context of Raman spectroscopy and SERS. Of particular interest here were the Raman tensors, their visual representation appropriate in the SERS case, their relation to the relative intensities of Raman peaks, and their modification when the photon energy approaches the electronic resonance of the molecule. Last, but not least, a conclusion chapter is presented, where I highlight what has contributed by the thesis to the general understanding of the SERS effect.</p>

Applicable surface enhanced Raman scattering (SERS) active substrates require high enhancement factor (EF), excellent spatial reproducibility, and low-cost fabrication method on a large area. Although several SERS substrates with high EF and relative standard deviation (RSD) of signal less than 5% were reported, reliable fabrication for large area SERS substrates with both high sensitivity and high reproducibility via low-cost routes remains a challenge. Here, we report a facile and cost-effective fabrication process for large-scale SERS substrate with Ag inter-nanoparticle (NP) gaps of 5 nm based on ultrathin alumina mask (UTAM) surface pattern technique. Such closely packed Ag NP arrays with high density of electromagnetic field enhancement ("hot spots") on large area exhibit high SERS activity and excellent reproducibility, simultaneously. Rhodamine 6G molecules with concentration of 1 × 10(-7) M are used to determine the SERS performance, and an EF of ∼10(9) is obtained. It should be noted that we obtain RSDs about 2% from 10 random spots on an area of 1 cm(2), which implies the highly reproducible signals. Finite-difference time-domain simulations further suggest that the enhanced electric field originates from the narrow gap, which agrees well with the experimental results. The low value of RSD and the high EF of SERS signals indicate that the as-prepared substrate may be promising for highly sensitive and uniform SERS detection.

Flexible and transparent Surface Enhanced Raman Scattering (SERS)-Active Ag NPs/PDMS composites for in-situ detection of food contaminants

Colloidal gold nanostructures are nowadays widely involved in sensor applications. One of the most interesting techniques that takes advantage of them is certainly the Surface Enhanced Raman Scattering (SERS) effect, even if it is often considered a tricky technique due to structural constraints required by the nanostructured substrates to obtain high enhancement factors (EFs), i.e. the presence of hot spots. Because of the easy preparation and high number of hot spots, aggregated gold nanospheres seem to be the most efficient through the SERS colloids, but their characteristic high disorder makes them unpredictable and difficult to compare between different batches. For this reason, less SERS effective, but more regular and organized substrates are usually preferred. In this study, a method based on Boundary Element Method (BEM) simulation is used to accurately predict the colloidal SERS EFs of gold nanoparticle (AuNP) aggregates, starting from their experimental extinction spectra. Surprisingly, it was found that larger aggregates do not exhibit stronger hot spots, but rather higher amounts of them, influencing the overall predicted EFs, which well reflect the results obtained experimentally.

Surface-enhanced Raman scattering (SERS) is a powerful spectroscopic technique that has created exciting opportunities in the field of bioanalytical chemistry, where it combines ultrasensitive detection of biologically relevant molecules with vibrational spectroscopy. Due to the difficulties in preparing reproducible SERS active substrates, SERS has been mainly used as a qualitative tool. In order for SERS to be utilized as a viable tool for quantitative analysis, simple, facile SERS substrates which generate clean, highly reproducible signals must be developed. This dissertation deals with the evaluation of three different methods of SERS that led to the development of a novel substrate for the analysis of biological molecules. In this dissertation, I demonstrated the generation of a SERS signal from pyridine adsorbed to the surface of a roughened silver electrode. The Raman signal was detected utilizing a remote fiber optic probe dispersive Raman instrument. The necessary parameters for generating the optimal SERS signal were established. The SERS spectrum of pyridine was successfully characterized. The synthesis of silver colloid solutions for use as a SERS active substrate was demonstrated. Two different synthetic methods were utilized and the conditions for optimal SERS signal strength were established. SERS signals from solutions of tryptophan were successfully generated and detected using an FT-Raman spectrometer. In this dissertation. I report the successful chemical deposition of a thin silver film on the surface of a quartz/glass fiber filter for use as a SERS active substrate. The successful detection of the SERS signal of solutions of phenylalanine and tryptophan utilizing the silver-coated filters and a FT-Raman instrument was demonstrated. Significant progress was made to develop a quantifiable SERS method utilizing the silver-coated filters. The silver-coated filter SERS method presented here is a novel and promising method for biochemical analysis. The demonstrated ability to detect amino acids and mixtures of amino acids can be further extended to the detection of similar biological molecules such as proteins, tumor markers, and nucleic acids. The use of a FT-Raman instrument combined with this new SERS method allows for a method with both high sensitivity and selectivity.

The emergence of antibacterial resistance and the development of new drugs lead to a continuous change of guidelines for medical treatments. Hence, new analytical tools are required for the detection of drugs in biological fluids. In this study, the first surface enhanced Raman scattering (SERS) detection of nitroxoline (NTX) in purified water and in spiked human urine samples is reported. Insights concerning the nature of the molecule-metal interaction and its influence on the overall SERS signal are provided. Furthermore, three randomly collected urine samples originating from a healthy volunteer were spiked to assess the limit of detection (LOD), the limit of quantification (LOQ), and the linear dynamic range of the lab-on-a-chip SERS (LoC-SERS) method for NTX detection in human urine. The LOD is ∼3 μM (0.57 mg/L), LOQ ∼ 6.5 μM (1.23 mg/L) while the linear range is between 4.28 and 42.8 μM (0.81-8.13 mg/L). This covers the minimum inhibitory concentration (MIC) values of the most commonly encountered uropathogens. Finally, seven clinical samples having an "unknown" NTX concentration were simulated. The LoC-SERS technique combined with the standard addition method and statistical data analysis provided a good prediction of the unknown concentrations. Additionally, it is also demonstrated that the predictions carried out by multicurve resolution alternating least-squares (MCR-ALS) algorithm provides reliable results, and it is preferred to a univariate statistical approach.

Oxygen vacancy engineering in metal oxide-based semiconductors has emerged as an important area of research for sensing applications, such as Surface-enhanced Raman scattering (SERS), gas sensing, etc. It has the potential to replace high-cost and unstable noble metal-based substrates in the near future. However, improving the SERS enhancement factor in semiconductor-based substrates remains a challenge. In the present study, we demonstrate that oxygen vacancy engineering in Niobium pentoxide (Nb2O5) enables ultrahigh SERS sensitivity. Oxygen vacancies were induced and manipulated in the Nb2O5 nanoparticles via a facile high-energy ball milling method and post-growth oxygen annealing. A high enhancement factor (EF) of 5.15 × 107 was obtained for the Methylene Blue (MeB) molecule on the oxygen-deficient substrate with the lowest detection limit of 10-8 M, which is 2 orders of magnitude lower than the pristine substrate. Through a careful analysis of the experimental data and theoretical calculations, we investigated the underlying mechanism behind the high EF in SERS and showed that the SERS performance is directly proportional to the oxygen vacancy concentration in the Nb2O5 nanoparticles. Density functional theory (DFT) calculation suggests a strong coupling of the vibronic states and an increased charge transfer (CT) efficiency in the Nb2O5-MeB complex mediated through the vacancy-induced trap states in the defective Nb2O5 structure. Finite element method (FEM)-based simulations revealed a field enhancement factor of ∼4.17 × 102 that contributed to the SERS EF, while the remaining is contributed to the oxygen vacancy-mediated charge transfer, i.e., a factor of ∼1.23 × 105 is due to the high CT efficiency, the highest among the reported values. We believe that these findings offer valuable insights into the fabrication of defect-tailored cost-effective semiconductor-based SERS substrates for ensuing applications, such as trace dye detection.

Over the past 40 years fundamental and application research into Surface-Enhanced Raman Scattering (SERS) has been explored by academia, industry, and government laboratories. To date however, SERS has achieved little commercial success as an analytical technique. Researchers are tackling a variety of paths to help break through the commercial barrier by addressing the reproducibility in both the SERS substrates and SERS signals as well as continuing to explore the underlying mechanisms. To this end, investigators use a variety of methodologies, typically studying strongly binding analytes such as aromatic thiols and azarenes, and report SERS enhancement factor calculations. However a drawback of the traditional SERS enhancement factor calculation is that it does not yield enough information to understand substrate reproducibility, application potential with another analyte, or the driving factors behind the molecule-metal interaction. Our work at the US Army Edgewood Chemical Biological Center has focused on these questions and we have shown that thermodynamic principles play a key role in the SERS response and are an essential factor in future designs of substrates and applications. This work will discuss the advantages and disadvantages of various experimental techniques used to report SERS enhancement with planar SERS substrates and present our alternative SERS enhancement value. We will report on three types of analysis scenarios that all yield different information concerning the effectiveness of the SERS substrate, practical application of the substrate, and finally the thermodynamic properties of the substrate. We believe that through this work a greater understanding for designing substrates will be achieved, one that is based on both thermodynamic and plasmonic properties as opposed to just plasmonic properties. This new understanding and potential change in substrate design will enable more applications for SERS based methodologies including targeting molecules that are traditionally not easily detected with SERS due to the perceived weak molecule-metal interaction of substrates.