The Neurodata Without Borders ecosystem for neurophysiological data science

Background: A key strength of population sciences and epidemiology is the breadth and depth of the data these studies, especially prospective cohorts, collect over time. However, publications from and websites of these studies tend to present collapsed or aggregate data in traditional tables, often underestimating the true complexity of information in those data. One goal of the NIH Strategic Plan for Data Science is to “support the development and dissemination of advanced data management, analytics, and visualization tools.” We recently developed a robust, innovative, and scalable data visualization environment for the California Teachers Study (CTS), a prospective cancer epidemiology cohort. Methods: We identified the need to eliminate the practice of storing CTS data in a collection of disparate data silos and constructed a data warehouse to compile two decades of study data, eliminating additional harmonization steps. We then developed a data commons, a remotely accessible environment where cohort data could be utilized by our researchers and study collaborators. This allowed questionnaire-based data, cancer registry information, and hospitalization and mortality data from our study participants to be easily accessed in a secure environment. Serving as a single unified source of information, the data warehouse, coupled with the industry-leading data visualization tool Tableau, was configured using the following key epidemiologic cohort activities: reports, cohort selection, calculated values, and exploring and transforming data variables for analysis. Results: With the ability to sort and filter on specific covariates we can define subsets of populations for cohort selection and endpoint-specific analysis. Using interactive reports with drags and drops, and creating calculated variables within Tableau, gives us the ability to visualize time between event data, such as time from study entry to a cancer diagnosis, multiple cancer diagnoses, hospitalizations, or mortality without requiring programmatic back-end coding. Conclusion: The creation of a data warehouse and data commons has given the CTS the ability to visualize information about the demographics and health-related patterns of our study participants, leading to faster answers to complex questions about our data. The interactive data visualizations that we have created allow users the ability to identify new patterns easily, and drill down into the data for a more detailed look. Defining analytic populations through cohort selection and adding geospatial data to our data warehouse has already resulted in the discovery of new patterns that had been unidentified before—simply by providing the same information but utilizing a more accessible and innovative approach to presenting it. As epidemiology uses and shares more of its data, it’s essential to help the widest possible community understand those data in detail. Data visualization can provide specific benefits to key, essential population sciences research activities. Citation Format: Nadia T. Chung, James V. Lacey Jr., Emma Spielfogel, Paul Hughes, Sandeep Chandra, Elena Martinez, Jennifer Benbow. Opportunities for and benefits of incorporating data visualization in population sciences [abstract]. In: Proceedings of the AACR Special Conference on Modernizing Population Sciences in the Digital Age; 2019 Feb 19-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Epidemiol Biomarkers Prev 2020;29(9 Suppl):Abstract nr A01.

Poland is characterised by a relatively high variety of living organisms attributed to terrestrial and water environments. Currently, close to 57.000 species of living organisms are described that occur in Poland (Symonides 2008), including lowland and mountain species, those attributed to oceanic and continental areas, as well as species from forested and open habitats. Poland comprehensively represents biodiversity of living organisms on a continental scale and thus, is considered to have an important role for biodiversity maintenance. The Mammal Research Institute of Polish Academy of Sciences (MRI PAS), located in Białowieża Forest, a UNESCO Heritage Site, has been collecting biodiversity data for 90 years. However, a great amount of data gathered over the years, especially old data, is gradually being forgotten and hard to access. Old catalogues and databases have never been digitalized or publicly shared, and not many Polish scientists are aware of the existence of such resources, not to mention the rest of the scientific world. Recognizing the need for an online, interoperable platform, following FAIR data principles (findable, accessible, interoperable, reusable), where biodiversity and scientific data can be shared, MRI PAS took a lead in creation of an Open Forest Data (OFD) repository. OpenForestData.pl (Fig. 1) is a newly created (2020) digital repository, designed to provide access to natural sciences data and provide scientists with an infrastructure for storing, sharing and archiving their research outcomes. Creating such a platform is a part of an ongoing development of life sciences in Poland, aiming for an open, modern science, where data are published as free-access. OFD also allows for the consolidation of natural science data, enabling the use and processing of shared data, including API (Application Programming Interface) tools. OFD is indexed by the Directory of Open Repositories (OpenDOAR) and Registry of Research Data Repositories (re3data). The OFD platform is based entirely on reliable, globally recognized open source software: DATAVERSE, an interactive database app which supports sharing, storing, exploration, citation and analysis of scientific data; GEONODE, a content management geospatial system used for storing, publicly sharing and visualising vector and raster layers, GRAFANA, a system meant for storing and analysis of metrics and large scale measurement data, as well as visualisation of historical graphs at any time range and analysis for trends; and external tools for database storage (Orthanc) and data visualisation (Orthanc plugin Osimis Web Viewer and Online 3D Viewer (https://3dviewer.net/), which were integrated with the system mechanism of Dataverse. Furthermore, according to the need for specimen description, Darwin Core (Wieczorek et al. 2012) metadata schema was decided to be the most suitable for specimen and collections description and mapped into a Dataverse additional metadata block. The use of Darwin Core is based on the same file format, the Darwin Core Archive (DwC-A) which allows for sharing data using common terminology and provides the possibility for easy evaluation and comparison of biodiversity datasets. It allows the contributors to OFD to optionally choose Darwin Core for object descriptions making it possible to share biodiversity datasets in a standardized way for users to download, analyse and compare. Currently, OFD stores more than 10.000 datasets and objects from the collections of Mammal Research Institute of Polish Academy of Sciences and Forest Science Institute of Białystok University of Technology. The objects from natural collections were digitalized, described, catalogued and made public in free-access. OFD manages seven types of collection materials: 3D and 2D scans of specimen in Herbarium, Fungarium, Insect and Mammal Collections, images from microscopes (including stereoscopic and scanning electron microscopes), morphometric measurements, computed tomography and microtomography scans in Mammal Collection, mammal telemetry data, satellite imagery, geospatial climatic and environmental data, georeferenced historical maps. 3D and 2D scans of specimen in Herbarium, Fungarium, Insect and Mammal Collections, images from microscopes (including stereoscopic and scanning electron microscopes), morphometric measurements, computed tomography and microtomography scans in Mammal Collection, mammal telemetry data, satellite imagery, geospatial climatic and environmental data, georeferenced historical maps. In the OFD repository, researchers have the possibility to share data in standardized way, which nowadays is often a requirement during the publishing process of a scientific article. Beside scientists, OFD is designed to be open and free for students and specialists in nature protection, but also for officials, foresters and nature enthusiasts. Creation of the OFD repository supports the development of citizen science in Poland, increases visibility and access to published data, improves scientific collaboration, exchange and reuse of data within and across borders.

Social media analytics has emerged as a critical tool for understanding consumer behavior in today’s digital landscape. This study explores the integration of social media analytics with Power BI to gain actionable insights into consumer preferences, behaviors, and trends at Cryptex Technologies, Nagpur. Leveraging the capabilities of Power BI, the research examines how data visualization and analytics tools can translate vast amounts of social media data into meaningful insights that drive decision-making. The study employs a mixed-methods approach, combining qualitative and quantitative data analysis, to evaluate the effectiveness of Power BI in analysing social media metrics such as engagement rates, sentiment analysis, and demographic segmentation. Results indicate that social media analytics, when effectively integrated with advanced visualization tools, significantly enhances the understanding of consumer behavior, enabling businesses to make data-driven marketing decisions. The findings further reveal that the use of interactive dashboards and real-time data processing capabilities of Power BI facilitates a deeper comprehension of market trends, helping organizations remain competitive in a rapidly evolving business environment. This research contributes to the growing body of knowledge on the strategic application of social media analytics in consumer behavior studies and offers practical insights for businesses aiming to optimize their social media strategies using data visualization tools.

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This paper proposes a dynamic analytical processing (DAP) visualization tool based on the Bubble-Wall Plot. It can be handily used to develop visual warning systems for visualizing the dynamic analytical processes of hazard data. Comparative analysis and case study methods are used in this research. Based on a literature review of Q1 publications since 2017, 23 types of data visualization approaches/tools are identified, including seven anomaly data visualization tools. This study presents three significant findings by comparing existing data visualization approaches. The primary finding is that no single visualization tool can fully satisfy industry requirements. This finding motivates academics to develop new DAP visualization tools. The second finding is that there are different views of Line Charts and various perspectives on Scatter Plots. The other one is that different researchers may perceive an existing data visualization tool differently, such as arguments between Scatter Plots and Line Charts and diverse opinions about Parallel Coordinate Plots and Scatter Plots. Users' awareness rises when they choose data visualization tools that satisfy their requirements. By conducting a comparative analysis based on five categories (Style, Value, Change, Correlation, and Others) with 26 subcategories of metric features, results show that this new tool can effectively solve the limitations of existing visualization tools as it appears to have three remarkable characteristics: the simplest cartographic tool, the most straightforward visual result, and the most intuitive tool. Furthermore, this paper illustrates how the Bubble-Wall Plot can be effectively applied to develop a warning system for presenting dynamic analytical processes of hazard data in the coal mine. Lastly, this paper provides two recommendations, one implication, six research limitations, and eleven further study topics.

In the modern business landscape, data visualization has become an indispensable element of business intelligence (BI), particularly within the context of US companies. The aim of this research paper is to examine how data visualization technologies might improve business intelligence and decision making in American businesses by examining adaptation, advantages and disadvantages. This research paper explores the transformative contribution of data visualization tools to improving business intelligence capabilities and their significant influence on the processes of decision-making. The study begins by examining the adoption of various data visualization tools and platforms, such as Tableau, Power BI, and Elkview within US companies. It delves into how these tools facilitate the conversion of complex data sets into visually intuitive formats, allowing stakeholders at all levels to grasp trends, patterns, and anomalies with greater ease. By integrating these visualization tools into their BI systems, companies can achieve a more nuanced understanding of their operational landscapes and market dynamics. The paper further evaluates the impact of data visualization on decision-making processes. Through an analysis of case studies and empirical data, it highlights several key benefits, including improved accuracy in data interpretation, enhanced ability to identify actionable insights, and accelerated decision-making timelines. The paper discusses strategies to overcome these challenges, such as ensuring data integrity and investing in user training to maximize the efficacy of visualization tools. Overall, the findings underscore that while data visualization is not a panacea, it significantly augments the decision-making capabilities of US companies by making data more accessible and actionable. The integration of advanced visualization techniques into BI practices is increasingly seen as a strategic advantage, driving both operational efficiencies and competitive differentiation. As data continues to proliferate, the role of data visualization in shaping business strategies and outcomes will likely become even more pronounced, making it a critical area of focus for future research and development in the field of business intelligence.

Data visualization and data mining are transdisciplinary tools for predictive and descriptive analytics. This presentation shows the abundance of data visualization tools currently available that are applicable for multi-disciplinary data. Some examples of visualization are presented as applied for multi-disciplines. Results of applying the most commonly used data visualization tools of Tableau [1] and Power BI [2] are presented as preliminary outputs of a funded Seed Money Grant that applies data for transmissible diseases for humans and also plant pathology. Tableau Software, LLC is an American interactive data visualization software company focused on business intelligence and can be used across all disciplines. Tableau products query relational databases, online analytical processing cubes, cloud databases, and spreadsheets to generate graph-type data visualizations.[1] Power BI (Business Intelligence) is a suite of business analytics tools developed by Microsoft that is widely used across various industries for business reporting, data analysis, and decision-making. [2] Future directions of this research are discussed that include using other data mining and visualization methods such as image processing techniques for applications to data for plant pathology and human diseases.

This article addresses the urgency of improving hydrological monitoring and effective water resource management, which is particularly crucial for flood prevention and rapid emergency response.The problem lies in the need to develop a tool for efficient collection, processing, and visualization of water level data in the rivers of the Lviv region. The research objective is to develop and implement an interactive web application based on ArcGIS for visualizing and analyzing water level dynamics. This tool is designed to display the location of hydrological posts, provide access to their current status information, and analyze time series of hydrological data. The key feature of this approach is the integration and visualization of data from both automated and manual (gauge) posts, significantly expanding the cover-age of hydrological information.Based on the stated objectives, the geoinformation approach has been implemented for collecting and visualizing hydro-logical post data in the Lviv region using ArcGIS tools. The data source for this system comprises observations provided by the Basin Water Resources Management of the Western Bug and Sian Rivers. As a result, the interactive ArcGIS monitoring dash-board has been developed. It visualizes spatial and temporal water level data, integrating a web map with tabular time series data. This ensures automatic synchronization between selecting a post on the map and displaying dynamic charts and analytical tables. The web application facilitates comprehensive analysis of hydrological data.The proposed solution significantly enhances hydrological monitoring and supports managerial decision-making regarding flood prevention and emergency response. Its practical value lies in its application for water resource management and flood risk assessment, including the visualization of indicators and access to operational information for specialists and au-thorities. Future research will focus on real-time data updates, integration with meteorological indicators, and development of models for forecasting water levels and potential flood zones.

With the advancement of Information technologies and applications, a copious amount of data is generated, which attracts both the research community to utilize this information for extracting knowledge and the industry for developing the knowledge-based system. Visualization of data, pattern mining from datasets and analyzing data drift for the different features are three highly used applications of machine learning and data science fields. A generic web-based tool integrated with such features will provide prodigious support for preprocessing the dataset and thus extracting accurate information. In this work, we propose such a data visualization tool, named VIM, which is a web-based comprehensive tool for generic data visualization, data preprocessing and mining suitable knowledge with drift analysis of data. Given a dataset, it can envisage the distribution of data with convenient statistical diagrams for different selected features. Moreover, users can employ VIM to generate association rules by selecting multiple features. We have developed VIM using Python Django framework and GraphLab library. We have deployed this tool to make this publicly usable, which can be accessed at http://210.4.73.237:9999/

Development of public toxicogenomics software for microarray data management and analysis

Secondary use of medical and administrative databases has become a powerful tool for epidemiological studies. In that respect, the recent access opening of French nationwide health record database or Système National des Données de Santé is a great opportunity to carry out comprehensive health studies at the country level. However, using this database is far from being straightforward for nonexpert data scientists; so, dedicated tools needed to be developed. Our contribution is focused on data management and visualization tools able to query and cope with the complexity of care pathways of patients. The scope of the toolbox presented below goes from interactive tools for building groups of patients to timeline representations of individual patient healthcare trajectories.

Granting agencies invest millions of dollars on the generation and analysis of data, making these products extremely valuable. However, without sufficient annotation of the methods used to collect and analyze the data, the ability to reproduce and reuse those products suffers. This lack of assurance of the quality and credibility of the data at the different stages in the research process essentially wastes much of the investment of time and funding and fails to drive research forward to the level of potential possible if everything was effectively annotated and disseminated to the wider research community. In order to address this issue for the Hawai’i Established Program to Stimulate Competitive Research (EPSCoR) project, a water science gateway was developed at the University of Hawai‘i (UH), called the ‘Ike Wai Gateway. In Hawaiian, ‘Ike means knowledge and Wai means water. The gateway supports research in hydrology and water management by providing tools to address questions of water sustainability in Hawai‘i. The gateway provides a framework for data acquisition, analysis, model integration, and display of data products. The gateway is intended to complement and integrate with the capabilities of the Consortium of Universities for the Advancement of Hydrologic Science’s (CUAHSI) Hydroshare by providing sound data and metadata management capabilities for multi-domain field observations, analytical lab actions, and modeling outputs. Functionality provided by the gateway is supported by a subset of the CUAHSI’s Observations Data Model (ODM) delivered as centralized web based user interfaces and APIs supporting multi-domain data management, computation, analysis, and visualization tools to support reproducible science, modeling, data discovery, and decision support for the Hawai’i EPSCoR ‘Ike Wai research team and wider Hawai‘i hydrology community. By leveraging the Tapis platform, UH has constructed a gateway that ties data and advanced computing resources together to support diverse research domains including microbiology, geochemistry, geophysics, economics, and humanities, coupled with computational and modeling workflows delivered in a user friendly web interface with workflows for effectively annotating the project data and products. Disseminating results for the ‘Ike Wai project through the ‘Ike Wai data gateway and Hydroshare makes the research products accessible and reusable.

BackgroundAs high-throughput sequencing applications continue to evolve, the rapid growth in quantity and variety of sequence-based data calls for the development of new software libraries and tools for data analysis and visualization. Often, effective use of these tools requires computational skills beyond those of many researchers. To ease this computational barrier, we have created a dynamic web-based platform, NASQAR (Nucleic Acid SeQuence Analysis Resource).ResultsNASQAR offers a collection of custom and publicly available open-source web applications that make extensive use of a variety of R packages to provide interactive data analysis and visualization. The platform is publicly accessible at http://nasqar.abudhabi.nyu.edu/. Open-source code is on GitHub at https://github.com/nasqar/NASQAR, and the system is also available as a Docker image at https://hub.docker.com/r/aymanm/nasqarall. NASQAR is a collaboration between the core bioinformatics teams of the NYU Abu Dhabi and NYU New York Centers for Genomics and Systems Biology.ConclusionsNASQAR empowers non-programming experts with a versatile and intuitive toolbox to easily and efficiently explore, analyze, and visualize their Transcriptomics data interactively. Popular tools for a variety of applications are currently available, including Transcriptome Data Preprocessing, RNA-seq Analysis (including Single-cell RNA-seq), Metagenomics, and Gene Enrichment.

Significant advances have been made to nonintrusive flow field diagnostics in the past decade. Camera based techniques are now capable of determining physical qualities such as surface deformation, surface pressure and temperature, flow velocities, and molecular species concentration. In each case, extracting the pertinent information from the large volume of acquired data requires powerful and efficient data visualization tools. The additional requirement for real time visualization is fueled by an increased emphasis on minimizing test time in expensive facilities. This paper addresses a capability titled LiveView3D, which is the first step in the development phase of an in depth, real time data visualization and analysis tool for use in aerospace testing facilities

A web based MDSplus data analysis and visualization system for EAST