UNCC Biomedical Semantic Question Answering Systems. BioASQ: Task-7B, Phase-B

In a spoken multiple-choice question answering (SMCQA) task, given a passage, a question, and multiple choices all in the form of speech, the machine needs to pick the correct choice to answer the question. While the audio could contain useful cues for SMCQA, usually only the auto-transcribed text is utilized in system development. Thanks to the large-scaled pre-trained language representation models, such as the bidirectional encoder representations from transformers (BERT), systems with only auto-transcribed text can still achieve a certain level of performance. However, previous studies have evidenced that acoustic-level statistics can offset text inaccuracies caused by the automatic speech recognition systems or representation inadequacy lurking in word embedding generators, thereby making the SMCQA system robust. Along the line of research, this study concentrates on designing a BERT-based SMCQA framework, which not only inherits the advantages of contextualized language representations learned by BERT, but integrates the complementary acoustic-level information distilled from audio with the text-level information. Consequently, an audio-enriched BERT-based SMCQA framework is proposed. A series of experiments demonstrates remarkable improvements in accuracy over selected baselines and SOTA systems on a published Chinese SMCQA dataset.

Explainability and interpretability are two important concepts, the absence of which can and should impede the application of well-performing neural networks to real-world problems. At the same time, they are difficult to incorporate into the large, black-box models that achieve state-of-the-art results in a multitude of NLP tasks. Bidirectional Encoder Representations from Transformers (BERT) is one such black-box model. It has become a staple architecture to solve many different NLP tasks and has inspired a number of related Transformer models. Understanding how these models draw conclusions is crucial for both their improvement and application. We contribute to this challenge by presenting VisBERT, a tool for visualizing the contextual token representations within BERT for the task of (multi-hop) Question Answering. Instead of analyzing attention weights, we focus on the hidden states resulting from each encoder block within the BERT model. This way we can observe how the semantic representations are transformed throughout the layers of the model. VisBERT enables users to get insights about the model’s internal state and to explore its inference steps or potential shortcomings. The tool allows us to identify distinct phases in BERT’s transformations that are similar to a traditional NLP pipeline and offer insights during failed predictions.

Question answering (QA) is a task in the field of natural language processing (NLP) and information retrieval, which has pivotal applications in areas such as online reading comprehension and web search engines. Currently, Bidirectional Encoder Representations from Transformers (BERT) and its biomedical variation (BioBERT) achieve impressive results on the reading comprehension QA datasets and medical-related QA datasets, and so they are widely used for a variety of passage-based QA tasks. However, their performances rapidly deteriorate when encountering passage and context ambiguities. This issue is prevalent and unavoidable in many fields, notably the web-based medical field. In this paper, we introduced a novel approach called the Multiple Synonymous Questions BioBERT (MSQ-BioBERT), which integrates question augmentation, rather than the typical single question used by traditional BioBERT, to elevate BioBERT’s performance on medical QA tasks. In addition, we constructed an ambiguous medical dataset based on the information from Wikipedia web. Experiments with both this web-based constructed medical dataset and open biomedical datasets demonstrate the significant performance gains of the MSQ-BioBERT approach, showcasing a new method for addressing ambiguity in medical QA tasks.

We introduce SPARTA, a novel neural retrieval method that shows great promise in performance, generalization, and interpretability for open-domain question answering. Unlike many neural ranking methods that use dense vector nearest neighbor search, SPARTA learns a sparse representation that can be efficiently implemented as an Inverted Index. The resulting representation enables scalable neural retrieval that does not require expensive approximate vector search and leads to better performance than its dense counterpart. We validated our approaches on 4 open-domain question answering (OpenQA) tasks and 11 retrieval question answering (ReQA) tasks. SPARTA achieves new state-of-the-art results across a variety of open-domain question answering tasks in both English and Chinese datasets, including open SQuAD, CMRC and etc. Analysis also confirms that the proposed method creates human interpretable representation and allows flexible control over the trade-off between performance and efficiency.

Transformer-based architectures have significantly advanced Natural Language Processing (NLP), with Bidirectional Encoder Representations from Transformers (BERT) serving as a strong baseline for extractive Question Answering (QA). This study aims to evaluate the performance of Indonesian BERT models on extractive QA tasks and to identify the most effective model for low-resource language settings. This research employed a comparative experimental method using two Indonesian BERT variants: indobert-base- ncased (IndoLEM) and indobert-base-p1 (IndoNLU/IndoBenchmark). Both models were fine-tuned on an Indonesian version of SQuAD 2.0, automatically translated via the Google Translate API. Answer-span alignment errors caused by translation were corrected using fuzzy string matching. Evaluation was conducted under identical hyperparameter settings and training schemes, using Exact Match (EM) and F1-score as performance metrics. The results indicate that IndoLEM achieved superior performance, with better loss convergence and a higher F1-score (71.58) than IndoNLU (63.59), and the difference was statistically significant (p < 0.001). In conclusion, IndoLEM is a more effective baseline model for Indonesian extractive QA systems. The findings also demonstrate that the composition and scale of pre-trained corpora substantially influence model performance in low-resource language contexts and highlight the importance of transfer learning for advancing NLP in underrepresented languages.

Deep learning approaches, utilizing Bidirectional Encoder Representation from Transformers (BERT) and advanced fine-tuning techniques, have achieved state-of-the-art accuracies in the domain of term extraction from texts. However, BERT presents some limitations in that it primarily captures the semantic context relative to the surrounding text without considering how relevant or central a token is to the overall document content. There has also been research on the application of sequence labeling on contextualized embeddings; however, the existing methods often rely solely on local context for extracting key phrases from texts. To address these limitations, this study proposes a centrality-weighted BERT model for key phrase extraction from text using sequence labelling (CenBERT-SEQ). The proposed CenBERT-SEQ model utilizes BERT to represent terms with various contextual embedding architectures, and introduces a centrality-weighting layer that integrates document-level context into BERT. This layer leverages document embeddings to influence the importance of each term based on its relevance to the entire document. Finally, a linear classifier layer is employed to model the dependencies between the outputs, thereby enhancing the accuracy of the CenBERT-SEQ model. The proposed CenBERT-SEQ model was evaluated against the standard BERT base-uncased model using three Computer Science article datasets, namely, SemEval-2010, WWW, and KDD. The experimental results show that, although the CenBERT-SEQ and BERT-base models achieved higher and close comparable accuracy, the proposed CenBERT-SEQ model achieved higher precision, recall, and F1-score than the BERT-base model. Furthermore, a comparison of the proposed CenBERT-SEQ model to that of related studies revealed that the proposed CenBERT-SEQ model achieved a higher accuracy, precision, recall, and F1-score of 95%, 97%, 91%, and 94%, respectively, than related studies, showing the superior capabilities of the CenBERT-SEQ model in keyphrase extraction from scientific documents.

Fenomena bullying di media sosial, khususnya di Twitter, telah menjadi isu yang semakin memprihatinkan dengan dampak signifikan terhadap kesehatan mental pengguna. Dalam rangka mengatasi masalah ini, deteksi otomatis tweet yang mengandung konten bullying menjadi sangat penting. Penelitian ini bertujuan untuk membandingkan performa dua model pemrosesan bahasa alami terbaru, yaitu BERT (Bidirectional Encoder Representations from Transformers) dan XLNet, dalam klasifikasi tweet yang mengandung bullying. Metodologi penelitian ini melibatkan pengumpulan dataset tweet yang telah dilabeli sebagai bullying atau non-bullying. Proses preprocessing teks dilakukan untuk membersihkan dan menyiapkan data sebelum digunakan dalam pelatihan model. Kedua model, BERT dan XLNet, dilatih dan diuji menggunakan dataset yang sama. Evaluasi performa dilakukan dengan menggunakan metrik akurasi, presisi, recall, dan F1-score. Hasil penelitian menunjukkan bahwa kedua model memiliki kemampuan yang baik dalam mengidentifikasi tweet bullying, akan tetapi XLNet menunjukkan performa yang lebih unggul dibandingkan BERT dengan tingkat akurasi sebesar 95%. Dengan nilai presisi = 100%, recall = 0,87%, dan F1-score = 0,88%. XLNet mampu menangkap konteks dan nuansa bahasa yang lebih kompleks dalam tweet, yang berkontribusi pada akurasi klasifikasi yang lebih tinggi. Penelitian ini memberikan kontribusi penting dalam bidang deteksi bullying di media sosial dengan menunjukkan bahwa penggunaan model XLNet lebih efektif dibandingkan BERT. Temuan ini dapat membantu platform seperti Twitter dalam mengidentifikasi dan mencegah konten bullying, sehingga menciptakan lingkungan online yang lebih aman bagi pengguna, serta dapat digunakan sebagai dasar untuk pengembangan sistem deteksi bullying yang lebih canggih dan efisien di masa depan. Abstract The phenomenon of bullying on social media, particularly on Twitter, has become an increasingly concerning issue with significant impacts on users' mental health. In order to address this issue, automatic detection of tweets containing bullying content is crucial. This study aims to compare the performance of two recent natural language processing models, namely BERT (Bidirectional Encoder Representations from Transformers) and XLNet, in the classification of tweets containing bullying. The research methodology involves collecting a dataset of tweets that have been labelled as bullying or non-bullying. Text preprocessing is done to clean and prepare the data before it is used in model training. Both models, BERT and XLNet, were trained and tested using the same dataset. Performance evaluation was conducted using accuracy, precision, recall, and F1-score metrics. The results show that both models have a good ability to identify bullying tweets, but XLNet shows superior performance compared to BERT with an accuracy rate of 95%. With precision = 100%, recall = 0.87%, and F1-score = 0.88%. XLNet is able to capture more complex context and language nuances in tweets, which contributes to higher classification accuracy. This research makes an important contribution to the field of bullying detection on social media by showing that the use of the XLNet model is more effective than BERT. These findings can help platforms like Twitter identify and prevent bullying content, thereby creating a safer online environment for users, and can be used as a basis for the development of more sophisticated and efficient bullying detection systems in the future.

Conversational search is the dominant intent of Question Answering, which is achieved through different NLP techniques, Deep Learning models. The advent of Transformer models has been a breakthrough in Natural Language Processing applications, which has attained a benchmark on state of NLP tasks such as question answering. Here we propose a semantic Malayalam Question Answering system that automatically answers the queries related to health issues. The Biomedical Question-Answering, especially in the Malayalam language, is a tedious and challenging task. The proposed model uses a neural network-based Bidirectional Encoder Representation from Transformers (BERT), to implement the question answering system. In this study, we investigate how to train and fine-tune a BERT model for Question-Answering. The system has been tested with our own annotated Malayalam SQUAD form health dataset. In comparing the result with our previous works - Word embedding and RNN based model, identified we find that our BERT model is more accurate than the previous models and achieves an F1 score of 86%.

Recently, people used social media to convey their emotions in the text. Text classification is required for group a text containing emotion or not and identify the type of emotion. Most of the research in emotion classification use machine learning methods. So this research offers the use of deep learning for the classification of emotions in text. One of the algorithms that is widely used for deep learning is BERT (Bidirectional Encoder Representations from Transformers). For the experiment, classification is divided into two phases, namely the first phase groups emotion or not emotion tweets, and the second phase groups emotion tweets into five types of emotions, namely happy, angry, sad, scared and surprised. The experiment uses three data scenarios, namely the commuter line, transjakarta and combination data. The BERT method was compared with the BiLSTM and LSTM methods for emotion classification. The result of this study is BERT generates the highest accuracy compared to other methods for the three data scenarios with values of 87.24%, 86.27%, and 86.99% in the first phase. Then, the next accuracy value followed by obtained BiLSTM, and the last is LSTM. In the second phase, BERT also obtained the highest accuracy values for the three data scenarios with values of 94.26%, 93.71 %, and 93.98%. Then, the evaluation using Precision, Recall and F1-Measure results that BERT provides the best overall method. In this study, BERT has good performance for emotion classification.

We study the problem of incorporating prior knowledge into a deep Transformer-based model,i.e.,Bidirectional Encoder Representations from Transformers (BERT), to enhance its performance on semantic textual matching tasks. By probing and analyzing what BERT has already known when solving this task, we obtain better understanding of what task-specific knowledge BERT needs the most and where it is most needed. The analysis further motivates us to take a different approach than most existing works. Instead of using prior knowledge to create a new training task for fine-tuning BERT, we directly inject knowledge into BERT's multi-head attention mechanism. This leads us to a simple yet effective approach that enjoys fast training stage as it saves the model from training on additional data or tasks other than the main task. Extensive experiments demonstrate that the proposed knowledge-enhanced BERT is able to consistently improve semantic textual matching performance over the original BERT model, and the performance benefit is most salient when training data is scarce.

In this paper we focus on an Natural Language Inference task. Being given two sentences, we classify their relation as NEUTRAL, ENTAILMENT or CONTRADICTION. Considering the achievements of BERT (Bidirectional Encoder Representations from Transformers) in many Natural Language Processing tasks, we use BERT features to create our base model for this task. However, several questions arise: can other features improve the performance obtained with BERT? If we are able to predict the situations in which BERT will fail, can we improve the performance by providing alternative models for these situations? We test several strategies and models, as alternatives to the standalone BERT model in the possible failure situations, and we take advantage of semantic features extracted from Discourse Representation Structures.

Text classification algorithms investigate the intricate relationships between words or phrases and attempt to deduce the document's interpretation. In the last few years, these algorithms have progressed tremendously. Transformer architecture and sentence encoders have proven to give superior results on natural language processing tasks. But a major limitation of these architectures is their applicability for text no longer than a few hundred words. In this paper, we explore hierarchical transfer learning approaches for long document classification. We employ pre-trained Universal Sentence Encoder (USE) and Bidirectional Encoder Representations from Transformers (BERT) in a hierarchical setup to capture better representations efficiently. Our proposed models are conceptually simple where we divide the input data into chunks and then pass this through base models of BERT and USE. Then output representation for each chunk is then propagated through a shallow neural network comprising of LSTMs or CNNs for classifying the text data. These extensions are evaluated on 6 benchmark datasets. We show that USE + CNN/LSTM performs better than its stand-alone baseline. Whereas the BERT + CNN/LSTM performs on par with its stand-alone counterpart. However, the hierarchical BERT models are still desirable as it avoids the quadratic complexity of the attention mechanism in BERT. Along with the hierarchical approaches, this work also provides a comparison of different deep learning algorithms like USE, BERT, HAN, Longformer, and BigBird for long document classification. The Longformer approach consistently performs well on most of the datasets.

The omnipresence of smartphones helps people to declare an emergency in realtime. In times of crisis, Twitter has become a big communication platform. As a result, more organizations are interested in tracking Twitter programmatically. Although governments and emergency management agencies work together through their respective national system for response to disasters, the sentiments of the people affected during and after the catastrophe decide the effectiveness of the disaster response and the recovery process. In recent years, sentiment analysis via Twitter-based machine learning has become a common subject. However, the detection of such tweets was often difficult due to the tweets’ language structure’s uncertainty. Thus, it is not always apparent if the words of a person announce a catastrophe. BERT (Bidirectional Encoder Representations by Transformers) is a profound learning model developed by Google. Since Google opened it, several scientists and companies have embraced it and have applied it to many text classification tasks. Therefore, we use BERT in this paper to some dataset disaster tweets. This research will help rescue and emergency responders establish effective knowledge management techniques for a rapidly evolving disaster environment.

BackgroundIt is essential for radiologists to communicate actionable findings to the referring clinicians reliably. Natural language processing (NLP) has been shown to help identify free-text radiology reports including actionable findings. However, the application of recent deep learning techniques to radiology reports, which can improve the detection performance, has not been thoroughly examined. Moreover, free-text that clinicians input in the ordering form (order information) has seldom been used to identify actionable reports. This study aims to evaluate the benefits of two new approaches: (1) bidirectional encoder representations from transformers (BERT), a recent deep learning architecture in NLP, and (2) using order information in addition to radiology reports.MethodsWe performed a binary classification to distinguish actionable reports (i.e., radiology reports tagged as actionable in actual radiological practice) from non-actionable ones (those without an actionable tag). 90,923 Japanese radiology reports in our hospital were used, of which 788 (0.87%) were actionable. We evaluated four methods, statistical machine learning with logistic regression (LR) and with gradient boosting decision tree (GBDT), and deep learning with a bidirectional long short-term memory (LSTM) model and a publicly available Japanese BERT model. Each method was used with two different inputs, radiology reports alone and pairs of order information and radiology reports. Thus, eight experiments were conducted to examine the performance.ResultsWithout order information, BERT achieved the highest area under the precision-recall curve (AUPRC) of 0.5138, which showed a statistically significant improvement over LR, GBDT, and LSTM, and the highest area under the receiver operating characteristic curve (AUROC) of 0.9516. Simply coupling the order information with the radiology reports slightly increased the AUPRC of BERT but did not lead to a statistically significant improvement. This may be due to the complexity of clinical decisions made by radiologists.ConclusionsBERT was assumed to be useful to detect actionable reports. More sophisticated methods are required to use order information effectively.

Augmenting commit classification by using fine-grained source code changes and a pre-trained deep neural language model