• Home
  • Search
  • Unlocking hematopoietic stem cell potential: integrative computational approaches for genomic and transcriptomic analysis
  • Cite Icon4
  • https://doi.org/10.3389/fcell.2025.1589823Copy DOI Icon

Unlocking hematopoietic stem cell potential: integrative computational approaches for genomic and transcriptomic analysis

Show More
  • Abstract
  • Literature Map
  • References
  • Citations
  • Similar Papers
Abstract

Hematopoietic stem cells (HSCs) sustain lifelong hematopoiesis through their capacity for self-renewal and multilineage differentiation. However, the isolation and functional characterization of HSCs remain challenging due to their cellular heterogeneity and dynamically regulated transcriptional and epigenetic landscapes. Advances in experimental and computational biology, including single-cell RNA sequencing (scRNA-seq), chromatin immunoprecipitation sequencing (ChIP-seq), network inference algorithms, and machine learning, have improved our ability to resolve transcriptional states, trace lineage trajectories, and reconstruct gene regulatory networks (GRN) at single-cell resolution. These approaches enable the discovery of novel HSC subtypes and regulatory factors, and facilitate the integration of multi-omics data to uncover epigenetic and transcriptional mechanisms that drive stem cell fate decisions. Additionally, machine learning models trained on high-throughput datasets provide predictive power for identifying novel enhancers, transcription factors, and therapeutic targets. This review underscores the synergistic role of computational tools in deciphering HSC biology and highlights their potential to improve stem cell therapies and precision treatments for hematologic disorders.

Similar Papers
  • Research Article
  • Citations13

Are transplantable stem cells required for adult hematopoiesis?

  • Jun 05, 2019
  • Experimental Hematology
  • Helen M Mcrae +2
  • Research Article
  • Citations82

Quiescence regulators for hematopoietic stem cell

  • Feb 01, 2011
  • Experimental Hematology
  • June Li
  • Research Article
  • Citations47

Stem cell gene transfer—efficacy and safety in large animal studies

  • Sep 01, 2004
  • Molecular Therapy
  • Peter A Horn +3
  • Supplementary Content
  • Citations10

Stem cell technology

  • Nov 13, 1999
  • BMJ
  • P A Fontes +1
  • Abstract

Human Hematopoietic Stem Cells Have Altered Mitochondrial Activity after Stem Cell Transplantation

  • Nov 02, 2023
  • Blood
  • Tiziana Coppola +7
  • Research Article

A non-telomeric role of POT1a in regulating HSC metabolism via TIN2 localization

  • Nov 03, 2025
  • Blood
  • Shunichi Adachi +4
  • Research Article
  • Citations75

Ex Vivo Expanded Hematopoietic Stem Cells Overcome the MHC Barrier in Allogeneic Transplantation

  • Aug 01, 2011
  • Cell Stem Cell
  • Junke Zheng +7
  • Research Article
  • Citations256

The Protean Nature of Cells in the B Lymphocyte Lineage

  • Jun 01, 2007
  • Immunity
  • Richard R Hardy +2
  • Abstract
  • Citations1

PI3-Kinase Deletion Dysregulates Autophagy in HSCs and Promotes Myelodysplasia

  • Nov 05, 2021
  • Blood
  • Kristina Ames +11
  • Research Article
  • Citations110

Plerixafor enables safe, rapid, efficient mobilization of hematopoietic stem cells in sickle cell disease patients after exchange transfusion

  • Feb 22, 2018
  • Haematologica
  • Chantal Lagresle-Peyrou +20
  • Abstract
  • Citations1

Ex Vivo Expansion of Hematopoietic Stem and Progenitor Cells Using a Natural Product, Garcinol

  • Nov 19, 2010
  • Blood
  • Taito Nishino +1
  • Abstract

Foxo3-Mediated Redox Regulation Is Required for DNA Damage Response in Hematopoietic Stem Cells.

  • Nov 16, 2012
  • Blood
  • Carolina L Bigarella +4
  • Abstract

Data Driven Computational Modeling of Hematopoiesis in Myelodysplastic Syndromes Unveils Differences in Hematopoietic Stem Cell Kinetics Compared to Age-Matched Healthy Controls

  • Nov 29, 2018
  • Blood
  • Michèle Kyncl +6
  • Abstract
  • Citations2

Interferon-Gamma Impairs Expansion and Hematopoietic Support of Bone Marrow Mesenchymal Stromal Cells

  • Dec 02, 2016
  • Blood
  • Marieke Goedhart +10
  • Abstract

A Conserved Cis-Regulatory Retinoic Acid Responsive Element Is Essential for Maintenance of Primitive Hematopoietic Stem Cells through Regulation of Hoxb Cluster

  • Dec 03, 2015
  • Blood
  • Pengxu Qian +9
Cactus Communications logo

Copyright 2026 Cactus Communications. All rights reserved.