There is growing concern about the effects of ocean acidification (OA) on coral reefs, with many studies indicating decreasing calcium carbonate production and reef growth. However, to accurately predict how coral reefs will respond to OA, it is necessary to characterize natural carbonate chemistry conditions, including the spatiotemporal mean and variability and the physical and biogeochemical drivers across different environments. In this study, spatial and temporal physiochemical variability was characterized at two contrasting reef locations in Bocas del Toro, Panama, that differed in their benthic community composition, reef morphology, and exposure to open ocean conditions, using a combination of approaches including autonomous sensors and spatial surveys during November 2015. Mean and diurnal temporal variability in both physical and chemical seawater parameters were similar between sites and sampling depths, but with occasional differences in extreme values. The magnitude of spatial variability was different between the two sites, which reflected the cumulative effect from terrestrial runoff and benthic metabolism. Based on graphical vector analysis of TA–DIC data, reef metabolism was dominated by organic over inorganic carbon cycling at both sites, with net heterotrophy and net calcium carbonate dissolution dominating the majority of observations. The results also highlight the potentially strong influence of terrestrial freshwater runoff on surface seawater conditions, and the challenges associated with evaluating and characterizing this influence on benthic habitats. The Bocas del Toro reef is a unique system that deserves attention to better understand the mechanisms that allow corals and coral reefs to persist under increasingly challenging environmental conditions.

Mountains are among the most sensitive ecosystems to climate change, and one of the most evident signs of climate-related effect is the continuous net loss of ice from the cryosphere. Several studies showed that meltwater from glaciated and perennially frozen areas can profoundly affect alpine aquatic ecosystems. Here, we present the impressive temporal increase in solutes in Lake Leit, a mountain lake in the Central Alps that is impacted by an active rock glacier. During the last 30 years, concentrations of sulfate and base cations increased by factors of 4 and 3, respectively. Atmospheric deposition, the only catchment external source, could be excluded as possible cause. The inlets have sulfate and base cations concentrations that were up to double the concentrations of the lake outlet confirming the presence of catchment internal sources. The highest concentrations were measured in the springs at the bottom of the rock glacier. Ground surface temperatures of the rock glacier indicated a high probability of permafrost occurrence, while the annual mean air temperature after the mid-1980s showed continuously positive deviations from the long-term average values (period 1961–1990) with increasing values after 2010. δ34S of sulfate in the inlets and the outflow indicated that sulfate in Lake Leit mainly derived from dissolution of gypsum/anhydrite even if its presence is not confirmed by the Geologic Atlas of Switzerland. Because of these results, we postulate the presence of subsurface traces of sulfate-bearing evaporites, probably associated with Triassic metasediments. These deposits are very common in the closer surroundings. We further hypothesize that the thawing of permafrost affects the flow path of water enabling its contact with fresh highly weatherable minerals increasing the overall weathering rate and shifting the relative ionic composition in the discharge toward the ions that originate from the most soluble minerals. This study shows that increased permafrost thawing in the future can influence water quality in high-alpine settings.

Stream carbon fluxes are one of the major components in the global C cycle, yet the discrimination of the various sources of stream carbon remains to a large extent unclear and less is known about the biogeochemical transformations that accompany the transfer of C from soils to streams. Here, we used patterns in stream water and groundwater δ13C values in a small forested tropical headwater catchment to investigate the source and contribution from the soil carbon pools to stream organic and inorganic carbon behavior over seasonal scales. Stream organic carbon (DOC and POC) comes mainly from the upper rich soil organic carbon horizons and derived from total organic carbon (TOC) of biogenic source. The isotopic compositions δ13CTOC, δ13CDOC and δ13CPOC of these carbon species were very close (− 30‰ to − 26‰) and typical of the forested C3 vegetation. The relationship observed between DOC and log pCO2 and δ13CDIC indicated that besides the considerable CO2 evasion that occurs as DIC is transported from soils to streams, there were also other processes affecting the stream DIC pool. In-stream mineralization of DOC and mixing of atmospheric carbon had a significant influence on the δ13CDIC values. These processes which varied seasonally with hydrological changes represent the main control on DOC and DIC cycling in the wet tropical milieu. The rapid turnover of carbon on hillside soils, the transformation of TOC to DOC in wetland soils and further mineralization of stream DOC to DIC favor the evasion of C, making the zone a source of carbon to the atmosphere.

As the second largest carbon pool, soil has a high CO2 content, and it has an important impact on water–rock interactions and the bacterial community structure and diversity in soils. In this paper, three sets of laboratory simulation experiments under six levels of partial pressure CO2 (pCO2) conditions were used to analyze and study the CO2–water–rock interactions and the bacterial community structure and diversity changes in soil under normal temperature and pressure. Results (1) The change of pCO2 had an obvious influence on the chemical components. The dissolution of CO2 led to the dissolution of dolomite and calcite, which increased the concentrations of HCO3−, Ca2+, and Mg2+ significantly. (2) The influence of pCO2 on the bacterial community structure and diversity was different, and the bacterial community structure became more complex and diverse with the extension of the experiment time. In the experiments, Proteobacteria and Firmicutes were the main dominant phyla, and Gammaproteobacteria and Bacilli were the main dominant classes. The abundance of Bacteroidetes and Bacteroidia was significantly increased with the increasing pCO2. (3) pH had a significant influence on the bacterial community structure during the experiments, and the influences of different chemical components, such as HCO3−, Ca2+, Mg2+, total dissolved solids (TDS), and K+, on the abundance of different bacterial species were significantly different. This work can provide a theoretical basis for the technology of bacterial–geological storage of CO2, and it has important significance for the protection of the groundwater environment and the soil ecosystem.