Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic inference methods.We present the first algorithm for (rooted) \textsc{Tree Containment} using the treewidth $t$ of the input network $N$ as parameter, showing that the problem can be solved in $2^{O(t^2)}\cdot|N|$ time and space.

We examine the classic game of Cops and Robbers played on models of dynamic graphs, that is, graphs evolving over discrete time steps. At each time step, a graph instance is generated as a subgraph of the underlying graph of the model. The cops and the robber take their turns on the current graph instance. The cops win if they can capture the robber at some point in time. Otherwise, the robber wins. In the offline case, the players are fully aware of the evolution sequence, up to some finite time horizon T. We provide a O(n 2k+1 T) algorithm to decide whether a given evolution sequence for an underlying graph with n vertices is k-cop-win via a reduction to a reachability game. In the online case, there is no knowledge of the evolution sequence, and the game might go on forever. Also, each generated instance is required to be connected. We provide a nearly tight characterization for sparse underlying graphs, i.e., with at most linear number of edges. We prove λ + 1 cops suffice to capture the robber in any underlying graph with n − 1 + λ edges. Further, we define a family of underlying graphs with n−1+λ edges where λ−1 cops are necessary (and sufficient) for capture.

Let $\Bigl\langle\matrix{n\cr k}\Bigr\rangle$, $\Bigl\langle\matrix{B_n\cr k}\Bigr\rangle$, and $\Bigl\langle\matrix{D_n\cr k}\Bigr\rangle$ be the Eulerian numbers in the types A, B, and D, respectively -- that is, the number of permutations of n elements with $k$ descents, the number of signed permutations (of $n$ elements) with $k$ type B descents, the number of even signed permutations (of $n$ elements) with $k$ type D descents. Let $S_n(t) = \sum_{k = 0}^{n-1} \Bigl\langle\matrix{n\cr k}\Bigr\rangle t^k$, $B_n(t) = \sum_{k = 0}^n \Bigl\langle\matrix{B_n\cr k}\Bigr\rangle t^k$, and $D_n(t) = \sum_{k = 0}^n \Bigl\langle\matrix{D_n\cr k}\Bigr\rangle t^k$. We give bijective proofs of the identity $$B_n(t^2) = (1 + t)^{n+1}S_n(t) - 2^n tS_n(t^2)$$ and of Stembridge's identity $$D_n(t) = B_n(t) - n2^{n-1}tS_{n-1}(t).$$ These bijective proofs rely on a representation of signed permutations as paths. Using this representation we also establish a bijective correspondence between even signed permutations and pairs $(w, E)$ with $([n], E)$ a threshold graph and $w$ a degree ordering of $([n], E)$, which we use to obtain bijective proofs of enumerative results for threshold graphs.

A set of vertices $S$ of a graph $G$ is {\em monophonically convex} if every induced path joining two vertices of $S$ is contained in $S$. The {\em monophonic convex hull of $S$}, $\langle S \rangle$, is the smallest monophonically convex set containing $S$. A set $S$ is {\em monophonic convexly independent} if $v \not\in \langle S - \{v\} \rangle$ for every $v \in S$. The {\em monophonic rank} of $G$ is the size of the largest monophonic convexly independent set of $G$. We present a characterization of the monophonic convexly independent sets. Using this result, we show how to determine the monophonic rank of graph classes like bipartite, cactus, triangle-free, and line graphs in polynomial time. Furthermore, we show that this parameter can computed in polynomial time for $1$-starlike graphs, i.e., for split graphs, and that its determination is $\NP$-complete for $k$-starlike graphs for any fixed $k \ge 2$, a subclass of chordal graphs. We also consider this problem on the graphs whose intersection graph of the maximal prime subgraphs is a tree.

Recently, a conjecture due to Hendry was disproved which stated that every Hamiltonian chordal graph is cycle extendible. Here we further explore the conjecture, showing that it fails to hold even when a number of extra conditions are imposed. In particular, we show that Hendry's Conjecture fails for strongly chordal graphs, graphs with high connectivity, and if we relax the definition of "cycle extendible" considerably. We also consider the original conjecture from a subtree intersection model point of view, showing that a result of Abuieda et al is nearly best possible.

The number of down-steps between pairs of up-steps in $k_t$-Dyck paths, a generalization of Dyck paths consisting of steps $\{(1, k), (1, -1)\}$ such that the path stays (weakly) above the line $y=-t$, is studied. Results are proved bijectively and by means of generating functions, and lead to several interesting identities as well as links to other combinatorial structures. In particular, there is a connection between $k_t$-Dyck paths and perforation patterns for punctured convolutional codes (binary matrices) used in coding theory. Surprisingly, upon restriction to usual Dyck paths this yields a new combinatorial interpretation of Catalan numbers.

Let $G=(V(G),E(G))$ be a finite simple undirected graph with vertex set $V(G)$, edge set $E(G)$ and vertex subset $S\subseteq V(G)$. $S$ is termed \emph{open-dominating} if every vertex of $G$ has at least one neighbor in $S$, and \emph{open-independent, open-locating-dominating} (an $OLD_{oind}$-set for short) if no two vertices in $G$ have the same set of neighbors in $S$, and each vertex in $S$ is open-dominated exactly once by $S$. The problem of deciding whether or not $G$ has an $OLD_{oind}$-set has important applications that have been reported elsewhere. As the problem is known to be $\mathcal{NP}$-complete, it appears to be notoriously difficult as we show that its complexity remains the same even for just planar bipartite graphs of maximum degree five and girth six, and also for planar subcubic graphs of girth nine. Also, we present characterizations of both $P_4$-tidy graphs and the complementary prisms of cographs that have an $OLD_{oind}$-set.

The majorization relation orders the degree sequences of simple graphs into posets called dominance orders. As shown by Ruch and Gutman (1979) and Merris (2002), the degree sequences of threshold and split graphs form upward-closed sets within the dominance orders they belong to, i.e., any degree sequence majorizing a split or threshold sequence must itself be split or threshold, respectively. Motivated by the fact that threshold graphs and split graphs have characterizations in terms of forbidden induced subgraphs, we define a class $\mathcal{F}$ of graphs to be dominance monotone if whenever no realization of $e$ contains an element $\mathcal{F}$ as an induced subgraph, and $d$ majorizes $e$, then no realization of $d$ induces an element of $\mathcal{F}$. We present conditions necessary for a set of graphs to be dominance monotone, and we identify the dominance monotone sets of order at most 3.

In this paper, we prove a collection of results on graphical indices. We determine the extremal graphs attaining the maximal generalized Wiener index (e.g. the hyper-Wiener index) among all graphs with given matching number or independence number. This generalizes some work of Dankelmann, as well as some work of Chung. We also show alternative proofs for two recents results on maximizing the Wiener index and external Wiener index by deriving it from earlier results. We end with proving two conjectures. We prove that the maximum for the difference of the Wiener index and the eccentricity is attained by the path if the order $n$ is at least $9$ and that the maximum weighted Szeged index of graphs of given order is attained by the balanced complete bipartite graphs.

In this paper, we enumerate Dumont permutations of the fourth kind avoiding or containing certain permutations of length 4. We also conjecture a Wilf-equivalence of two 4-letter patterns on Dumont permutations of the first kind.