- Research Article
- 10.1093/neuonc/noaf201.0155
BIOM-67. A MIRNA-BASED LIQUID BIOPSY FOR BRAIN TUMOR DIAGNOSIS AND IN VITRO EFFECTS OF MIRNA INHIBITION ON GLIOBLASTOMA STEM CELL GROWTH, VIABILITY, AND SELF-RENEWAL
- Nov 11, 2025
- Neuro-Oncology
- Owen P Leary + 13 more +13
Abstract INTRODUCTION Blood biomarkers could enable cost-effective, early detection of brain tumors. While circulating miRNAs are promising candidates, disease specificity is poorly understood. Here, we use an unbiased approach to identify miRNAs which distinguish brain tumor cases from controls, correlate findings with glioblastoma stem cell (GSC) miRNA expression, and characterize the effects of inhibiting select miRNAs on GSC phenotypes. METHODS Patients undergoing surgery at a single center for newly diagnosed brain tumors (pathology-confirmed glioblastoma n=21, meningioma n=27, or brain metastasis n=9) and age-matched controls undergoing elective surgery for degenerative spinal disease (DSD n=24, e.g. microdiscectomy) were recruited for preoperative research blood collection (2019–2024). 798 miRNAs were quantified per serum sample using nCounter (Nanostring). AutoML (JADBio) was applied to identify miRNAs which optimally classify samples by these diagnoses, and model stability analyses confirmed those that classify samples most consistently. Model performance is reported as area under receiver operating characteristic (AUROC) and mean precision (MP). The same miRNAs were quantified in GSC media. Those which distinguished glioblastoma cases from controls were inhibited in vitro via lipid transfection (qPCR-confirmed) to observe effects on GSC growth (Incucyte), viability (CellTiter-Glo®), and self-renewal (sphere formation). RESULTS miRNA-based classification of brain tumor (n=57) versus DSD controls (n=24) yielded excellent performance (AUROC=0.93 [0.88–0.98], MP=0.95 [0.91–0.98]), as did glioblastoma versus DSD (AUROC=0.94 [0.86–1.00], MP=0.95 [0.91–1.00]) and glioblastoma/metastasis versus DSD (AUROC=0.92 [0.85–0.97], MP=0.95 [0.91–0.98]). Some performance-driving miRNAs (miR-150-5p, miR-1283) were under-expressed in glioblastoma cases while others (miR-873-3p, let-7b-5p) were over-expressed. These miRNAs were also expressed in GSC media. Inhibiting let-7b-5p was noted to reduce GSC growth, viability, and self-renewal, while inhibiting others augmented these phenotypes. CONCLUSIONS A preoperative miRNA signature may accurately distinguish brain tumor patients from age-matched controls. Inhibition of these miRNAs affected GSC phenotypes. Future studies will validate classification models in an independent cohort and investigate the effect of miRNA inhibition on GSC transcript expression (RNA-sequencing).
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