Unité Évolution, Écologie et Paléontologie

It is broadly assumed that polyploidy success results from increased fitness associated with whole genome duplication due to higher tolerance to stressful conditions. In agreement, several theoretical models found that, among other factors, a better tolerance to new environmental conditions can promote polyploidy establishment. Here, we investigated the effect of the genetic and environmental factors affecting the architecture of unreduced gamete production, to see how it affects the origin and persistence of autopolyploids in both stable and disturbed environments. We developed a theoretical model in which we modeled the joint evolution of a quantitative trait under selection and the production of unreduced gametes; both traits were pleiotropically linked. We followed the adaptation of initially diploid populations to a new environment to which tetraploid individuals were directly adapted. The generation of these autotetraploid individuals was enabled by the genetic production of unreduced gametes and by the environmental change modifying the average production of these gametes. We found that for realistic values of unreduced gamete production adaptation to new environmental conditions was mainly achieved through adaptation of diploids to the new optimum rather than the persistence of newly adapted tetraploid individuals. In broader parameter sets, we found that the adaptation process led to mixed-ploidy populations, except when the populations were swamped with unreduced gametes, and that pleiotropy and environmental effects favored the co-existence of both cytotypes.

Land use is a major driver of biodiversity loss, but how it impacts parasite communities is scarcely documented. Crater lakes and their catchments in rural western Uganda greatly vary in their intensity of anthropogenic disturbance, thus providing an opportunity to assess the effects of land use on snail-borne parasitic trematodes. We applied state-of-the-art molecular biomonitoring to 2385 Bulinus tropicus snails from 34 lakes to detect and genotype trematode infections. The 45 trematode taxa recovered infect a wide range of final vertebrate hosts, and some can cause health burdens of significant public importance. Using constrained ordinations and generalized additive models, we found that B. tropicus reaches peak abundance in lakes with catchments partly under agriculture, whereas trematode infections increase with B. tropicus abundance and peak at intermediate aquatic productivity. Trematode diversity also increases with aquatic productivity, levelling off only in the most productive lakes. These relationships likely reflect the higher abundance and variety of final hosts sustained by more productive lakes. Finally, we found that land use affects trematode community composition, with more livestock parasites and less bird parasites occurring in agricultural catchments. Our results indicate that both land use and lake eutrophication affect the distribution of hotspots for parasitic disease transmission.

We design a stochastic individual-based model structured in energy, for single species consuming an external resource, where populations are characterized by a typical energy at birth in $\mathbb{R}^{*}_{+}$. The resource is maintained at a fixed amount, so we benefit from a branching property at the population level. Thus, we focus on individual trajectories, constructed as Piecewise Deterministic Markov Processes, with random jumps modelling births and deaths in the population; and a continuous and deterministic evolution of energy between jumps. We are mainly interested in the case where metabolic (i.e. energy loss for maintenance), growth, birth and death rates depend on the individual energy over time, and follow allometric scalings (i.e. power laws). Our goal is to determine in a bottom-up approach what are the possible allometric coefficients (i.e. exponents of these power laws) under elementary -- and ecologically relevant -- constraints, for our model to be valid for the whole spectrum of possible body sizes. We show in particular that assuming an allometric coefficient $\alpha$ related to metabolism strongly constrains the range of possible values for the allometric coefficients $\beta$, $\delta$, $\gamma$, respectively related to birth, death and growth rates. We further identify and discuss the precise and minimal ecological mechanisms that are involved in these strong constraints on allometric scalings.

The Early Devonian plant fossil record provides evidence of large vegetation turnover events in addition to rapid morphological and anatomical changes among vascular plants. The Ardenno-Rhenish Massif has historically yielded a vast number of these plant fossils allowing us to obtain a nearly unparalleled snapshot of Early Devonian vegetation. Nonetheless, the interest for describing or redescribing fossil floras from this region has waned in recent years despite their inherent value to understand Early Devonian plant diversity dynamics. Here, we describe a newly collected macrofossil flora from the middle Emsian Schuttbourg Formation at Consthum Quarry (Luxembourg). Six different plant macrofossil taxa were identified, including Drepanophycus spinaeformis and Psilophyton cf. princeps, in addition to putative macroalgal and fungal remains. The flora also includes other equivocal specimens resembling Sawdonia, Huvenia and Zosterophyllum. The composition of the assemblage is extremely similar, at generic level, to older Pragian–early Emsian and coeval floras from nearby localities, which indicates that there was no major floral turnover until the latter part of the Emsian in this region. Taxonomic descriptions also highlight many of the underlying issues in identifying Early Devonian sterile specimens. Inconsistencies in plant fossil identifications from this region call for a thorough revision of Belgian and German floras that together could provide a high-resolution picture of plant diversity changes in the Early Devonian.

The long-term balancing selection acting on mating types or sex-determining genes is expected to lead to the accumulation of deleterious mutations in the tightly linked chromosomal segments that are locally 'sheltered' from purifying selection. However, the factors determining the extent of this accumulation are poorly understood. Here, we took advantage of variations in the intensity of balancing selection along a dominance hierarchy formed by alleles at the sporophytic self-incompatibility system of the Brassicaceae to compare the pace at which linked deleterious mutations accumulate among them. We first experimentally measured the phenotypic manifestation of the linked load at three different levels of the dominance hierarchy. We then sequenced and phased polymorphisms in the chromosomal regions linked to 126 distinct copies of S-alleles in two populations of Arabidopsis halleri and three populations of Arabidopsis lyrata. We find that linkage to the S-locus locally distorts phylogenies over about 10-30 kb along the chromosome. The more intense balancing selection on dominant S-alleles results in greater fixation of linked deleterious mutations, while recessive S-alleles accumulate more linked deleterious mutations that are segregating. Hence, the structure rather than the overall magnitude of the linked genetic load differs between dominant and recessive S-alleles. Our results have consequences for the long-term evolution of new S-alleles, the evolution of dominance modifiers between them, and raise the question of why the non-recombining regions of some sex and mating type chromosomes expand over evolutionary times while others, such as the S-locus of the Brassicaceae, remain restricted to small chromosomal regions.

In the context of worldwide biodiversity and wild bee decline, it is increasingly important to better understand the effect of land-use changes on wild bee communities at a global scale. To do so, we studied the effect of city area and urban green spaces layout on wild bee species richness and community composition, as well as on wild bee species with an unfavorable UICN conservation status. This study was based on a large European dataset encompassing 20 cities from France, Belgium and Switzerland. We found a mean wild bee species richness in cities of 96 ± 48 (SD), showing that this species richness was highly variable among cities. The main factor positively influencing wild bee species richness in cities was the area of the city. Conversely, species richness was not significantly related to the total area of urban green spaces in a given city, measured as the spatial extent of urban parks, wastelands and other semi-natural habitats, excluding urban private gardens. Species with conservation status were quite scarce in urban environments, especially when compared to the European Red List of Bees, and we could not link their presence to either city or urban green space area. Dissimilarities in wild bee species community compositions were not associated with any of the studied characteristics of cities. We found that the dissimilarity of wild bee community composition among cities was mainly driven by the rarest species, as the most common ones were found in a majority of the cities sampled. Overall, these results emphasize that larger cities host more wild bee species, but are no refuge for the ones with concerning conservation status. Thus, stakeholders are encouraged to design their cities in favor of biodiversity to better support wild bee communities, and perhaps mitigate the established effect of the urban ecological filter.