3DFin: a software for automated 3D forest inventories from terrestrial point clouds

We present the point cloud slicing (PCS) algorithm, to post process point cloud data (PCD) from terrestrial laser scanning (TLS). We then test this tool for forest inventory application in urban heterogeneous forests. The methodology was based on a voxel data structure derived from TLS PCD. We retrieved biophysical tree parameters including diameter at breast height (DBH), tree height, basal area, and volume. Our results showed that TLS-based metrics explained 91.17% (RMSE = 9.1739 cm, p < 0.001) of the variation in DBH at individual tree level. Though the scanner generated a high-density PCD, only 57.27% (RMSE = 0.7543 m, p < 0.001) accuracy was achieved for predicting tree heights in these very heterogeneous stands. Furthermore, we developed a voxel-based TLS volume estimation method. Our results showed that PCD generated from TLS single location scans only captures 18% of the total tree volume due to an occlusion effect; yet there are significant relationships between the TLS data and field measured parameters for DBH and height, giving promise to the utility of a side scanning approach. Using our method, a terrestrial LiDAR-based inventory, also applicable to mobile- or vehicle-based laser scanning (MLS or VLS), was produced for future calibration of Aerial Laser Scanning (ALS) data and urban forest canopy assessments.

Tree volume is a key feature in forest monitoring, delivering information, such as wood availability or forest carbon balance. To date, tree volume, i.e. the total volume of the above ground woody parts of a tree, cannot be measured directly with conventional tools. Terrestrial laser scanning (TLS) offers the potential to directly measure tree volume. However, its application in forest monitoring requires a profound understanding of the precision and accuracy of retrieval approaches. In this study, we present a simulation environment for evaluating TLS application in forest inventories. We investigate the influence of understorey density, scanner placement and TLS sensor type on volume estimation of tree parts of varying diameters. Using information from 30 sample plots from the Swiss NFI to simulate 197 sample trees, we evaluate three understorey densities, five scanner locations and their combinations and three realistic and one hypothetic (geometric scanning) TLS sensor types. We show that tree volume estimates from point clouds are biased to certain extent: from about 25% for small trees to a few percent for larger trees above 40 cm diameter at breast height (DBH). Especially small tree parts (diameters < 7 cm) lack accurate and precise estimation. In small trees with 12 cm DBH they are overestimated by 110% in average with a high variation, whereas they are underestimated in large trees, i.e. with DBH ≥ 75 cm, by 50% in average. Volume estimation of small tree parts is subject to physical limits of TLS, however the estimation of volume of large tree parts could be feasible with appropriate TLS settings and field protocols. Nevertheless, tree volume estimation using TLS must be understood in greater depth before it can be applied regularly in forest inventories.

The collection of field-reference data is a key task in remote sensing-based forest inventories. However, traditional methods of collection demand extensive personnel resources. Thus, field-reference data collection would benefit from more automated methods. In this study, we proposed a method for individual tree detection (ITD) and stem attribute estimation based on a car-mounted mobile laser scanner (MLS) operating along forest roads. We assessed its performance in six ranges with increasing mean distance from the roadside. We used a Riegl VUX-1LR sensor operating with high repetition rate, thus providing detailed cross sections of the stems. The algorithm we propose was designed for this sensor configuration, identifying the cross sections (or arcs) in the point cloud and aggregating those into single trees. Furthermore, we estimated diameter at breast height (DBH), stem profiles, and stem volume for each detected tree. The accuracy of ITD, DBH, and stem volume estimates varied with the trees’ distance from the road. In general, the proximity to the sensor of branches 0–10 m from the road caused commission errors in ITD and over estimation of stem attributes in this zone. At 50–60 m from roadside, stems were often occluded by branches, causing omissions and underestimation of stem attributes in this area. ITD’s precision and sensitivity varied from 82.8% to 100% and 62.7% to 96.7%, respectively. The RMSE of DBH estimates ranged from 1.81 cm (6.38%) to 4.84 cm (16.9%). Stem volume estimates had RMSEs ranging from 0.0800 m3 (10.1%) to 0.190 m3 (25.7%), depending on the distance to the sensor. The average proportion of detected reference volume was highly affected by the performance of ITD in the different zones. This proportion was highest from 0 to 10 m (113%), a zone that concentrated most ITD commission errors, and lowest from 50 to 60 m (66.6%), mostly due to the omission errors in this area. In the other zones, the RMSE ranged from 87.5% to 98.5%. These accuracies are in line with those obtained by other state-of-the-art MLS and terrestrial laser scanner (TLS) methods. The car-mounted MLS system used has the potential to collect data efficiently in large-scale inventories, being able to scan approximately 80 ha of forests per day depending on the survey setup. This data collection method could be used to increase the amount of field-reference data available in remote sensing-based forest inventories, improve models for area-based estimations, and support precision forestry development.

ABSTRACTThe development of laser scanning technologies has gradually modified methods for forest mensuration and inventory. The main objective of this study is to assess the potential of integrating ALS and TLS data in a complex mixed Mediterranean forest for assessing a set of five single-tree attributes: tree position (TP), stem diameter at breast height (DBH), tree height (TH), crown base height (CBH) and crown projection area radii (CPAR). Four different point clouds were used: from ZEB1, a hand-held mobile laser scanner (HMLS), and from FARO® FOCUS 3D, a static terrestrial laser scanner (TLS), both alone or in combination with ALS. The precision of single-tree predictions, in terms of bias and root mean square error, was evaluated against data recorded manually in the field with traditional instruments. We found that: (i) TLS and HMLS have excellent comparable performances for the estimation of TP, DBH and CPAR; (ii) TH was correctly assessed by TLS, while the accuracy by HMLS was lower; (iii) CBH was the most difficult attribute to be reliably assessed and (iv) the integration with ALS increased the performance of the assessment of TH and CPAR with both HMLS and TLS.

Analysing the potential of UAV point cloud as input in quantitative structure modelling for assessment of woody biomass of single trees

Accurate estimation of tree position, diameter at breast height (DBH), and tree height measurements is an important task in forest inventory. Mobile Laser Scanning (MLS) is an important solution. However, the poor global navigation satellite system (GNSS) coverage under the canopy makes the MLS system unable to provide globally-consistent point cloud data, and thus, it cannot accurately estimate the forest attributes. SLAM could be an alternative for solutions dependent on GNSS. In this paper, a mobile phone with RGB-D SLAM was used to estimate tree position, DBH, and tree height in real-time. The main aims of this paper include (1) designing an algorithm to estimate the DBH and position of the tree using the point cloud from the time-of-flight (TOF) camera and camera pose; (2) designing an algorithm to measure tree height using the perspective projection principle of a camera and the camera pose; and (3) showing the measurement results to the observer using augmented reality (AR) technology to allow the observer to intuitively judge the accuracy of the measurement results and re-estimate the measurement results if needed. The device was tested in nine square plots with 12 m sides. The tree position estimations were unbiased and had a root mean square error (RMSE) of 0.12 m in both the x-axis and y-axis directions; the DBH estimations had a 0.33 cm (1.78%) BIAS and a 1.26 cm (6.39%) root mean square error (RMSE); the tree height estimations had a 0.15 m (1.08%) BIAS and a 1.11 m (7.43%) RMSE. The results showed that the mobile phone with RGB-D SLAM is a potential tool for obtaining accurate measurements of tree position, DBH, and tree height.

Stereo images have long been the main practical data source for the high-accuracy retrieval of 3-D information over large areas. However, stereoscopy has been surpassed by laser scanning (LS) techniques in recent years, particularly in forested areas, because the reflection of laser points from object surfaces directly provides 3-D geometric features and because the laser beam has good penetration capacity through forest canopies. In the last few years, image-based point clouds have become a more widely available data source because of advances in matching algorithms and computer hardware. This paper explores the possibility of using consumer cameras for forest field data collection and presents an application of terrestrial image-based point clouds derived from a handheld camera to forest plot inventories. In the experiment, the sample forest plot was photographed in a stop-and-go mode using different routes and camera settings. Five data sets were generated from photographs taken in the field, representing different photographic conditions. The stem detection accuracy ranged between 60% and 84%, and the root-mean-square errors of the estimated diameters at breast height were between 2.98 and 6.79 cm. The performance of image-based point clouds in forest data collection was compared with that of point clouds derived from two LS techniques, i.e., terrestrial LS (the professional level) and personal LS (an emerging technology). The study indicates that the construction of image-based point clouds of forest field data requires only low-cost, low-weight, and easy-to-use equipment and automated data processing. Photographic measurement is easy and relatively fast. The accuracy of tree attribute estimates is close to an acceptable level for forest field inventory but is lower than that achieved with the tested LS techniques.

A crucial part of carbon accounting is quantifying a tree’s aboveground biomass (AGB) using allometric equations, but species-specific equations are limited because data to inform these equations requires destructive harvesting of many trees which is difficult and time-consuming. Here, we used terrestrial laser scanning (TLS) to non-destructively estimate AGB for 282 trees from 5 species at 3 locations in Northern California using stem and branch volume estimates from quantitative structure models (QSMs) and wood density from the literature. We then compared TLS QSM estimates of AGB with published allometric equations and used TLS-based AGB, diameter at breast height (DBH), and height to derive new species-specific allometric AGB equations for our study species. To validate the use of TLS, we used traditional forestry approaches to collect DBH (n = 550) and height (n = 291) data on individual trees. TLS-based DBH and height were not significantly different from field inventory data (R2 = 0.98 for DBH, R2 = 0.95 for height). Across all species, AGB calculated from TLS QSM volumes were approximately 30% greater than AGB estimates using published Forest Service’s Forest Inventory and Analysis Program equations, and TLS QSM AGB estimates were 10% greater than AGB calculated with existing equations, although this variation was species-dependent. In particular, TLS AGB estimates for Quercus agrifolia and Sequoia sempervirens differed the most from AGB estimates calculated using published equations. New allometric equations created using TLS data with DBH and height performed better than equations that only included DBH and matched most closely with AGB estimates generated from QSMs. Our results support the use of TLS as a method to rapidly estimate height, DBH, and AGB of multiple trees at a plot-level when species are identified and wood density is known. In addition, the creation of new TLS-based non-destructive allometric equations for our 5 study species may have important applications and implications for carbon quantification over larger spatial scales, especially since our equations estimated greater AGB than previous approaches.

Terrestrial laser scanners provide accurate and detailed point clouds of forest plots, which can be used as an alternative to destructive measurements during forest inventories. Various specialized algorithms have been developed to provide automatic and objective estimates of forest attributes from point clouds. The STEP (Snakes for Tuboid Extraction from Point cloud) algorithm was developed to estimate both stem diameter at breast height and stem diameters along the bole length. Here, we evaluate the accuracy of this algorithm and compare its performance with two other state-of-the-art algorithms that were designed for the same purpose (i.e., the CompuTree and SimpleTree algorithms). We tested each algorithm against point clouds that incorporated various degrees of noise and occlusion. We applied these algorithms to three contrasting test sites: (1) simulated scenes of coniferous stands in Newfoundland (Canada), (2) test sites of deciduous stands in Phalsbourg (France), and (3) coniferous plantations in Quebec, Canada. In most cases, the STEP algorithm predicted diameter at breast height with higher R2 and lower RMSE than the other two algorithms. The STEP algorithm also achieved greater accuracy when estimating stem diameter in occluded and noisy point clouds, with mean errors in the range of 1.1 cm to 2.28 cm. The CompuTree and SimpleTree algorithms respectively produced errors in the range of 2.62 cm to 6.1 cm and 1.03 cm to 3.34 cm, respectively. Unlike CompuTree or SimpleTree, the STEP algorithm was not able to estimate trunk diameter in the uppermost portions of the trees. Our results show that the STEP algorithm is more adapted to extract DBH and stem diameter automatically from occluded and noisy point clouds. Our study also highlights that SimpleTree and CompuTree require data filtering and results corrections. Conversely, none of these procedures were applied for the implementation of the STEP algorithm.

&amp;lt;p&amp;gt;Unmanned aerial vehicles-borne laser scanning (ULS) allows time-efficient acquisition of high-resolution point clouds on regional extents at moderate costs. The quality of ULS-point clouds facilitates the 3D modelling of individual tree stems, what opens new possibilities in the context of forest monitoring and management. In our study, we developed and tested an algorithm which allows for i) the autonomous detection of potential stem locations within the point clouds, ii) the estimation of the diameter at breast height (DBH) and iii) the reconstruction of the tree stem. In our experiments on point clouds from both, a RIEGL miniVUX-1DL and a VUX-1UAV, respectively, we could detect 91.0 % and 77.6 % of the stems within our study area automatically. The DBH could be modelled with biases of 3.1 cm and 1.1 cm, respectively, from the two point cloud sets with respective detection rates of 80.6 % and 61.2 % of the trees present in the field inventory. The lowest 12 m of the tree stem could be reconstructed with absolute stem diameter differences below 5 cm and 2 cm, respectively, compared to stem diameters from a point cloud from terrestrial laser scanning. The accuracy of larger tree stems thereby was higher in general than the accuracy for smaller trees. Furthermore, we recognized a small influence only of the completeness with which a stem is covered with points, as long as half of the stem circumference was captured. Likewise, the absolute point count did not impact the accuracy, but, in contrast, was critical to the completeness with which a scene could be reconstructed. The precision of the laser scanner, on the other hand, was a key factor for the accuracy of the stem diameter estimation.&amp;amp;#160;&amp;lt;br&amp;gt;The findings of this study are highly relevant for the flight planning and the sensor selection of future ULS acquisition missions in the context of forest inventories.&amp;lt;/p&amp;gt;

The calibration and accuracy analysis of a novel, low-cost, adaptable mobile laser scanning (MLS) system using a Velodyne HDL-32E laser scanner and an Oxford Technical Solutions Inertial+2 inertial navigation system, is described. First, a static calibration of the laser scanner is discussed. The static calibration is shown to improve the overall relative accuracy of point cloud data from the scanner by approximately 20% over the manufacturer-supplied calibration. Then, the determination of system boresight angles and lever-arm offsets using a planar patch least-squares approach is presented. Finally, the calibrated and boresighted MLS is operated in a backpack mode to acquire multiple data sets in an area that contains dense ground control acquired using static terrestrial laser scanning (TLS) and a high-end, survey-grade MLS. The dense ground control is used to examine several methods of estimating the overall errors of the backpack MLS system. Detailed comparison of the MLS data with the TLS and survey-grade MLS control shows that, despite the system’s low cost, it is able to reliably collect point cloud data with greater than 10-cm three-dimensional root-mean-square error accuracy.

Abstract. Using terrestrial laser scanning (TLS), forest attributes such as diameter at breast height (DBH) and tree location can be measured accurately. However, due to low penetration of laser pulses to tree tops, tree height measurements are typically underestimated. In this study, data acquired by TLS and drones were combined; DBH and tree locations were determined by TLS, and tree heights were measured by drone use. The average tree height error and root mean square error (RMSE) of tree height were 0.8 and 1.2 m, respectively, for the combined method, and –0.4 and 1.7 m using TLS alone. The tree height difference was compared using airborne laser scanning (ALS). Furthermore, a method to acquire 100 % tree detection rate based on TLS data is suggested in this study.

Point clouds acquired by mobile laser scanners (MLS) are widely used for generating as-built building information models (BIM), particularly in indoor construction environments and existing buildings. While MLS offers fast and efficient scanning through SLAM technology, its accuracy and precision remains lower than that of terrestrial laser scanners (TLS). This study investigates the potential to improve MLS-based as-built BIM accuracy by analyzing and utilizing error distribution patterns inherent in MLS point clouds. Based on the assumption that each MLS device exhibits consistent and unique error distribution patterns, an experiment was conducted using three MLS devices and TLS-derived reference data. The analysis employed iterative closest point (ICP) registration and cloud-to-mesh (C2M) distance measurements on mock-ups with closed shapes. The results revealed that error patterns were stable across scans and could be leveraged as correction factors. In other words, the results indicate that when using MLS for as-built BIM generation, robust fitting methods have limitations in obtaining realistic object dimensions, as they do not account for the unique error patterns present in MLS point clouds. The proposed method provides a simple and repeatable approach for enhancing MLS accuracy, contributing to improved dimensional reliability in MLS-driven BIM applications.

Abstract. In the last few years, a number of low-cost 3D scanning sensors have been developed to reconstruct the real-world environment. These sensors were primarily designed for indoor use, making them highly unpredictable in terms of their performance and accuracy when used outdoors. The Azure Kinect belongs to this category of low-cost 3D scanners and has been successfully employed in outdoor applications. In addition, this sensor possesses features such as portability and live visualization during data acquisition that makes it extremely interesting in the field of forestry. In the context of forest inventory, these advantages would allow to facilitate the task of tree parameters acquisition in an efficient manner. In this paper, a protocol was established for the acquisition of 3D data in forests using the Azure Kinect. A comparison of the resulting point cloud was performed against photogrammetry. Results demonstrated that the Azure Kinect point cloud was of suitable quality for extracting tree parameters such as diameter at breast height (DBH, with a standard deviation of 2.2cm). Furthermore, the quality of the visual and geometric information of the point cloud was evaluated in terms of its feasibility to identify microhabitats. Microhabitats represent valuable information on forest biodiversity and are included in Swiss forest inventory measurements. In total, five different microhabitats were identified in the Azure Kinect Point cloud. The measurements were therefore comparable to sensors such as terrestrial laser scanning and photogrammetry. Therefore, we argue that the Azure Kinect point cloud can efficiently identify certain types of microhabitats and this study presents a first approach of its application in forest inventories.

Presently, the application of Terrestrial Laser Scanning (TLS) technique in forest inventory is becoming widely spread due its high level of accuracy. It is able to provide precise and detailed tree attributes. This study aims to determine tree attributes from point cloud data captured from TLS and to validate the estimated tree attributes by using the conventional method of tree measurement. These attributes include diameter at breast height (DBH) of the tree, tree height, crown base height and average crown spread. They were estimated from both the TLS and conventional techniques. The DBH was estimated using the cylinder fitting model while tree height, crown base height and average crown spread were measured manually from the Cyclone software. Finally, this study has shown that TLS is a reliable technique for tree inventory and can be applied in forest management for easy, fast, and efficient estimation of forest biomass.