Combinatorial CNN-Transformer Learning with Manifold Constraints for Semi-supervised Medical Image Segmentation

Deep learning has achieved great success in the field of computer vision, and the precision in image classification and image detection has surpassed humans. Therefore, this paper combines deep learning and medical image segmentation, focusing on how to improve the accuracy and speed of segmentation algorithm of medical exercise rehabilitation image. Aiming at the shortcomings of traditional medical image recognition methods, a medical exercise rehabilitation image segmentation algorithm based on hierarchical features of convolutional neural networks is proposed, this paper calls it as hierarchical features of convolutional neural networks (HFCNN). The algorithm firstly samples the convolution output of multiple layers in the convolutional neural network to a unified scale and combines them to construct a hierarchical feature. This hierarchical feature combines the structural information of objects contained in the shallow layer of the network with the semantic information of objects contained in the deep layers of the network, so it has a strong ability to express. Secondly, the image can be segmented into multiple super pixels by the super pixel segmentation algorithm. The classifier is trained using the hierarchical features of the super pixel, and then the classification result is mapped back to the pixel. Finally, a fully connected conditional random field algorithm including one-potential potential energy and paired potential energy is constructed. The corresponding energy function is used to smooth the classification result of the pixel, and the regional consistency and continuity of the pixel mark are improved. Compared with many classical convolutional neural network algorithms, this algorithm not only accelerates the network convergence speed, shortens the training time, but also significantly improves the accuracy of segmentation algorithm of medical exercise rehabilitation image, showing good practical value.

Motion trajectory recognition is important for characterizing the moving property of an object. The speed and accuracy of trajectory recognition rely on a compact and discriminative feature representation, and the situations of varying rotation, scaling and translation has to be specially considered. In this paper we propose a novel feature extraction method for trajectories. Firstly a trajectory is represented by a proposed point context, which is a rotation-scale-translation (RST) invariant shape descriptor with a flexible tradeoff between computational complexity and discrimination, yet we prove that it is a complete shape descriptor. Secondly, the shape context is nonlinearly mapped to a subspace by kernel nonparametric discriminant analysis (KNDA) to get a compact feature representation, and thus a trajectory is projected to a single point in a low-dimensional feature space. Experimental results show that, the proposed trajectory feature shows encouraging improvement than state-of-art methods.

Disaster damage detection through synergistic use of deep learning and 3D point cloud features derived from very high resolution oblique aerial images, and multiple-kernel-learning

Medical image segmentation is an essential process in disease analysis and diagnosis, in which medical images are divided into specific areas of anatomic or pathological structures. However, this process has challenges, such as the quality, variability, and complexity of medical images. Thus, we propose a medical image segmentation method using the Convolutional Neural Network (CNN) and the Histogram Equalization (HE) image preprocessing. We evaluated medical image segmentation using 2 secondary datasets, namely Lung CT-Scan and Chest X-Rays, with 267 and 3616 images, respectively. The HE method uses an averaging of the optimal cumulative distribution function (CDF) values with a range of 0 to 39. The experimental results show that adding the HE method can increase the accuracy of CNN on the Lung CT-Scan and Chest X-rays data sets, respectively, by 0.73 percentage points from 91.28% to 92.08 % and 1.23 percentage points from 95.56% to 96.85% for the training process. The results of the testing process (validation) have an increase in accuracy of 2.82 percentage points from 89.77% to 92.59% and 0.91 percentage points from 96.06% to 96.97%. Implementing the HE method increases accuracy in CNN medical image segmentation based on the value of dice similarity coefficient (DSC) and structural similarity index measurement (SSIM) close to 0.95.

Robust RGB-D tracking via compact CNN features

In this work, we present an approach based on multilevel local as well as global Convolutional Neural Network (CNN) feature matching to retrieve near duplicate images. CNN features are suitable for visual matching. The CNN features of entire image may not give accuracy in retrieval due to various image editing/capturing operations. Our retrieval task focuses on matching image pairs based on local and global levels. In local matching, an image is segmented into fixed size blocks followed by extracting patches by considering neighboring regions at different levels. Matching local image patches at different levels provides robustness to our retrieval model. In local patch extraction, we select blocks containing SURF feature points instead of selecting all blocks. CNN features are extracted and stored for each image patch and then followed by extraction of global CNN features. Finally, similarity between image pairs is computed by considering all extracted CNN features. Our similarity function is based on correlation and number of blocks found in matching. We implemented our proposed approach on benchmarking Holiday dataset. Retrieval results show remarkable improvement in mean average precision (mAP) on the dataset.

Using unlabeled data in a sparse-coding framework for human activity recognition

3D brain tumor segmentation is essential for the diagnosis, monitoring, and treatment planning of brain diseases. In recent studies, the Deep Convolution Neural Network (DCNN) is one of the most potent methods for medical image segmentation. In this paper, we review the different kinds of tricks applied to 3D brain tumor segmentation with DNN. We divide such tricks into three main categories: data processing methods including data sampling, random patch-size training, and semi-supervised learning, model devising methods including architecture devising and result fusing, and optimizing processes including warming-up learning and multi-task learning. Most of these approaches are not particular to brain tumor segmentation, but applicable to other medical image segmentation problems as well. Evaluated on the BraTS2019 online testing set, we obtain Dice scores of 0.810, 0.883 and 0.861, and Hausdorff Distances (95th percentile) of 2.447, 4.792, and 5.581 for enhanced tumor core, whole tumor, and tumor core, respectively. Our method won the second place of the BraTS 2019 Challenge for the tumor segmentation.

Medical image segmentation is a critical task in computer-assisted diagnosis and therapy planning. Accurate and efficient fully automated segmentation methods are essential for accelerating decision-making processes. Compared with natural image segmentation methods, current deep learning–based segmentation models for medical imaging face challenges related to data scarcity, inconsistent annotations, and high computational cost. Consequently, this thesis aims to develop efficiency and generalised medical image segmentation models, which are fundamental to the clinical adoption and industrial deployment of this technology in healthcare settings. This thesis systematically addresses these challenges through a series of progressively advanced deep learning models. The foundational work, CTranS, forms a baseline medical image segmentation model that combines a convolutional neural network (CNN) based encoder with a Transformer-based decoder. This initial contribution leverages the strengths of CNNs for local feature extraction and Transformers for global contextual understanding, achieving state-of-the-art (SOTA) performance. Subsequently, to enhance the generalisability, MO-CTranS is introduced, which is capable of learning from a mixture of multiple partially labelled datasets. MO-CTranS employs a CNN encoder and Transformer decoder with task-specific tokens to handle label inconsistencies and class imbalances, tackling the challenges of training a single unified model from fragmented and heterogeneously annotated medical data. This innovation moves beyond single-task, fully-annotated model training towards a more scalable and clinically realistic approach. Despite the superior performance of CTranS and MO-CTranS, the computational efficiency of the Transformer blocks hinders their clinical application. Thus, CRFTrans is proposed to enhance the model efficiency. As a novel recursive Vision Transformer layer designed to replace the commonly used cascaded Transformer layers, this approach represents a fundamental shift from simply stacking layers to a recursive refinement process, demonstrating that comparable performance can be achieved with significantly reduced computational complexity, thus facilitating deployment in resource-constrained clinical environments. However, these methods still depend on extensive manual annotation, which remains challenging and time-consuming in clinical practice. Thus, to further enhance both efficiency and generality, a novel semi-supervised medical image segmentation framework, referred to as SSL-MedSAM2, has been developed. SSL-MedSAM2 integrates a training-free few-shot segmentation branch for pseudo labelling and a fully supervised learning branch for label refinement. This design allows the model to leverage a small fraction of labelled images together with a large unlabelled set, dramatically decreasing the annotation effort. Together, these contributions result in deep learning models that are significantly more data-efficient and broadly applicable than conventional approaches. The overall impact of this work is to facilitate the reliable and scalable deployment of segmentation models in real-world clinical settings by bridging the gap among accuracy, efficiency, and generalisability.

Objective. Although convolutional neural networks (CNN) and Transformers have performed well in many medical image segmentation tasks, they rely on large amounts of labeled data for training. The annotation of medical image data is expensive and time-consuming, so it is common to use semi-supervised learning methods that use a small amount of labeled data and a large amount of unlabeled data to improve the performance of medical imaging segmentation. Approach. This work aims to enhance the segmentation performance of medical images using a triple-teacher cross-learning semi-supervised medical image segmentation with shape perception and multi-scale consistency regularization. To effectively leverage the information from unlabeled data, we design a multi-scale semi-supervised method for three-teacher cross-learning based on shape perception, called Semi-TMS. The three teacher models engage in cross-learning with each other, where Teacher A and Teacher C utilize a CNN architecture, while Teacher B employs a transformer model. The cross-learning module consisting of Teacher A and Teacher C captures local and global information, generates pseudo-labels, and performs cross-learning using prediction results. Multi-scale consistency regularization is applied separately to the CNN and Transformer to improve accuracy. Furthermore, the low uncertainty output probabilities from Teacher A or Teacher C are utilized as input to Teacher B, enhancing the utilization of prior knowledge and overall segmentation robustness. Main results. Experimental evaluations on two public datasets demonstrate that the proposed method outperforms some existing semi-segmentation models, implicitly capturing shape information and effectively improving the utilization and accuracy of unlabeled data through multi-scale consistency. Significance. With the widespread utilization of medical imaging in clinical diagnosis, our method is expected to be a potential auxiliary tool, assisting clinicians and medical researchers in their diagnoses.

Deep convolutional neural networks (CNNs) have been widely and successfully applied in many computer vision tasks, such as classification, detection, semantic segmentation, and so on. As for image retrieval, while off-the-shelf CNN features from models trained for classification task are demonstrated promising, it remains a challenge to learn specific features oriented for instance retrieval. Witnessing the great success of low-level SIFT feature in image retrieval and its complementary nature to the semantic-aware CNN feature, in this paper, we propose to embed the SIFT feature into the CNN feature with a Siamese structure in a learning-based paradigm. The learning objective consists of two kinds of loss, i.e., similarity loss and fidelity loss. The first loss embeds the image-level nearest neighborhood structure with the SIFT feature into CNN feature learning, while the second loss imposes that the CNN feature with the updated CNN model preserves the fidelity of that from the original CNN model solely trained for classification. After the learning, the generated CNN feature inherits the property of the SIFT feature, which is well oriented for image retrieval. We evaluate our approach on the public data sets, and comprehensive experiments demonstrate the effectiveness of the proposed method.

We propose simple and effective models for the image annotation that make use of Convolutional Neural Network (CNN) features extracted from an image and word embedding vectors to represent their associated tags. Our first set of models is based on the Canonical Correlation Analysis (CCA) framework that helps in modeling both views - visual features (CNN feature) and textual features (word embedding vectors) of the data. Results on all three variants of the CCA models, namely linear CCA, kernel CCA and CCA with k-nearest neighbor (CCA-KNN) clustering, are reported. The best results are obtained using CCA-KNN which outperforms previous results on the Corel-5k and the ESP-Game datasets and achieves comparable results on the IAPRTC-12 dataset. In our experiments we evaluate CNN features in the existing models which bring out the advantages of it over dozens of handcrafted features. We also demonstrate that word embedding vectors perform better than binary vectors as a representation of the tags associated with an image. In addition we compare the CCA model to a simple CNN based linear regression model, which allows the CNN layers to be trained using back-propagation.

Automatic target recognition has been one of the hottest research in synthetic aperture radar (SAR) data processing. Noticing that popular recognition methods cannot utilize multiple features of SAR complex data, a method fused scattering center feature and deep convolutional neural network (CNN) feature is proposed in this letter. This method contains three key parts, namely, scattering center extraction and reconstruction block, CNN feature extraction block, and final feature fusion and classification block. In this process, the scattering center feature and CNN feature are fused at the level of feature maps, which retain the space information of 2-D feature maps. What is more, the proposed half end-to-end strategy realizes the automatic update of weighting parameters in feature extraction network and subnetwork, which promotes a better recognition efficiency. Experimental results on measured SAR data show that the proposed method can achieve better accuracy than other single feature-based methods and feature fusion methods.

The article examines the application of semi-supervised learning and computer vision methods for segmentation of spine MR images and diagnosis of deformation of intervertebral discs. Existing neural network architectures for spine MR image segmentation and semi-supervised learning methods used in medical image segmentation are reviewed. A system for diagnosis deformation of intervertebral discs is proposed, which consists of two modules: a segmentation module and a diagnostic module. The implementation of the proposed system using two convolutional neural networks is presented: U-Net for segmentation of spine MR images and ResNet for classification of the degree of deformation of each intervertebral disc based on the Pfirrmann classification of degenerative changes. The software implementation of the medical diagnosis system was developed in the Python programming language using the PyTorch library. Neural networks were trained on an open dataset of spine MR images using a variant of the Mean Teacher semi-supervised learning method. As a result of the verification, it was found that the system is capable of performing segmentation with high accuracy. It was found that the exact prediction of the grade of degenerative changes according to Pfirrmann remains a difficult task, but the introduction of another classification made it possible to increase the accuracy of diagnosis of deformation of intervertebral discs. The proposed medical system involves the addition of new diagnostic modules, which makes it possible to use it for the comprehensive analysis of various spine diseases

Semi-supervised medical image segmentation via uncertainty rectified pyramid consistency.