Semi-supervised medical image segmentation via uncertainty rectified pyramid consistency.

Medical image segmentation is a fundamental task in medical image analysis, playing a crucial role in disease diagnosis, treatment planning, and clinical decision-making. Accurate segmentation of anatomical structures, such as blood vessels, organs, and lesions, is essential for reliable medical interpretations. However, existing segmentation models often face challenges in effectively capturing both local and global features within medical images. Traditional convolutional neural networks (CNNs) excel at extracting fine-grained local features but struggle to model long-range dependencies due to their limited receptive fields. Conversely, transformer-based models can capture global contextual relationships but often fail to preserve detailed local structures, leading to suboptimal segmentation performance. The purpose of this study is to develop SEFormer, a novel hybrid network that integrates SENet, ResNet, and Transformer to enhance medical image segmentation. SEFormer aims to effectively capture both local and global features, addressing the limitations of traditional CNNs and transformer-based models.SENet is incorporated to recalibrate feature maps by adaptively emphasizing informative features, thereby compensating for the global representation limitations of CNNs. Meanwhile, the ResNet backbone ensures deep feature extraction while maintaining computational efficiency. Additionally, the Transformer module is introduced to capture long-range dependencies and enhance contextual awareness, complementing the local feature extraction capabilities of CNNs. This hybrid approach allows SEFormer to balance fine-grained spatial details with broader contextual information, leading to more precise segmentation results.Furthermore, to mitigate information loss during feature extraction and ensure a more complete and hierarchical representation of image information, we introduce a feature pyramid structure inspired by multi-scale image pyramid models. By progressively increasing the receptive field across different scales and employing skip connections, SEFormer effectively fuses multi-scale local and global features at each stage of the pyramid. This hierarchical fusion mechanism ensures a richer and more robust feature representation, which is particularly beneficial for segmenting complex medical structures such as blood vessels. We evaluate SEFormer on the CHASE_DB1 dataset, a widely used benchmark for retinal vessel segmentation. Experimental results demonstrate that SEFormer outperforms existing state-of-the-art segmentation methods, achieving a 3.25% improvement in segmentation accuracy. Additionally, we conduct ablation studies to verify the contributions of different components within SEFormer. The results show that incorporating SENet enhances feature recalibration and channel attention, while the Transformer module significantly improves global context awareness. The feature pyramid structure further contributes to performance gains by ensuring a multi-scale representation of vascular structures. Compared to conventional CNN-based methods, our approach achieves better segmentation accuracy with improved robustness to variations in vessel thickness, noise, and image contrast. Furthermore, SEFormer maintains computational efficiency, making it suitable for real-world clinical applications where both accuracy and processing speed are critical. SEFormer provides an efficient and accurate approach for medical image segmentation by leveraging the complementary strengths of CNNs, SENet, and Transformers while integrating a feature pyramid structure to maximize feature representation. Future research directions include extending SEFormer to other medical imaging modalities, such as CT and MRI scans, as well as exploring further optimization techniques to reduce computational costs while maintaining high segmentation performance. Additionally, integrating SEFormer with active learning frameworks could further improve segmentation performance by leveraging expert-annotated data more efficiently.

Objective. Although convolutional neural networks (CNN) and Transformers have performed well in many medical image segmentation tasks, they rely on large amounts of labeled data for training. The annotation of medical image data is expensive and time-consuming, so it is common to use semi-supervised learning methods that use a small amount of labeled data and a large amount of unlabeled data to improve the performance of medical imaging segmentation. Approach. This work aims to enhance the segmentation performance of medical images using a triple-teacher cross-learning semi-supervised medical image segmentation with shape perception and multi-scale consistency regularization. To effectively leverage the information from unlabeled data, we design a multi-scale semi-supervised method for three-teacher cross-learning based on shape perception, called Semi-TMS. The three teacher models engage in cross-learning with each other, where Teacher A and Teacher C utilize a CNN architecture, while Teacher B employs a transformer model. The cross-learning module consisting of Teacher A and Teacher C captures local and global information, generates pseudo-labels, and performs cross-learning using prediction results. Multi-scale consistency regularization is applied separately to the CNN and Transformer to improve accuracy. Furthermore, the low uncertainty output probabilities from Teacher A or Teacher C are utilized as input to Teacher B, enhancing the utilization of prior knowledge and overall segmentation robustness. Main results. Experimental evaluations on two public datasets demonstrate that the proposed method outperforms some existing semi-segmentation models, implicitly capturing shape information and effectively improving the utilization and accuracy of unlabeled data through multi-scale consistency. Significance. With the widespread utilization of medical imaging in clinical diagnosis, our method is expected to be a potential auxiliary tool, assisting clinicians and medical researchers in their diagnoses.

Semi-supervised medical image segmentation via a tripled-uncertainty guided mean teacher model with contrastive learning.

Uncertainty-aware multi-view co-training for semi-supervised medical image segmentation and domain adaptation.

Semi-supervised learning (SSL), as one of the dominant methods, aims at leveraging the unlabeled data to deal with the annotation dilemma of supervised learning, which has attracted much attentions in the medical image segmentation. Most of the existing approaches leverage a unitary network by convolutional neural networks (CNNs) with compulsory consistency of the predictions through small perturbations applied to inputs or models. The penalties of such a learning paradigm are that (1) CNN-based models place severe limitations on global learning; (2) rich and diverse class-level distributions are inhibited. In this paper, we present a novel CNN-Transformer learning framework in the manifold space for semi-supervised medical image segmentation. First, at intra-student level, we propose a novel class-wise consistency loss to facilitate the learning of both discriminative and compact target feature representations. Then, at inter-student level, we align the CNN and Transformer features using a prototype-based optimal transport method. Extensive experiments show that our method outperforms previous state-of-the-art methods on three public medical image segmentation benchmarks.

Medical image segmentation is a critical application of computer vision in the analysis of medical images. Its primary objective is to isolate regions of interest in medical images from the background, thereby assisting clinicians in accurately identifying lesions, their sizes, locations, and their relationships with surrounding tissues. However, compared to natural images, medical images present unique challenges, such as low resolution, poor contrast, inconsistency, and scattered target regions. Furthermore, the accuracy and stability of segmentation results are subject to more stringent requirements. In recent years, with the widespread application of Convolutional Neural Networks (CNNs) in computer vision, deep learning-based methods for medical image segmentation have become a focal point of research. This paper categorizes, reviews, and summarizes the current representative methods and research status in the field of medical image segmentation. A comparative analysis of relevant experiments is presented, along with an introduction to commonly used public datasets, performance evaluation metrics, and loss functions in medical image segmentation. Finally, potential future research directions and development trends in this field are predicted and analyzed.

ABSTRACTSemantic segmentation is a key task in computer vision, with medical image segmentation as a prominent downstream application that has seen significant advancements in recent years. However, the challenge of requiring extensive annotations in medical image segmentation remains exceedingly difficult. In addressing this issue, semi‐supervised semantic segmentation has emerged as a new approach to mitigate annotation burdens. Nonetheless, existing methods in semi‐supervised medical image segmentation still face challenges in fully exploiting unlabeled data and efficiently integrating labeled and unlabeled data. Therefore, this paper proposes a novel network model—feature similarity multilevel information fusion network (FSMIFNet). First, the feature similarity module is introduced to harness deep feature similarity among unlabeled images, predicting true label constraints and guiding segmentation features with deep feature relationships. This approach fully exploits deep feature information from unlabeled data. Second, the multilevel information fusion framework integrates labeled and unlabeled data to enhance segmentation quality in unlabeled images, ensuring consistency between original and feature maps for comprehensive optimization of detail and global information. In the ACDC dataset, our method achieves an mDice of 0.684 with 5% labeled data, 0.873 with 10%, 0.884 with 20%, and 0.897 with 50%. Experimental results demonstrate the effectiveness of FSMIFNet in semi‐supervised semantic segmentation of medical images, outperforming existing methods on public benchmark datasets. The code and models are available at https://github.com/liujiayin12/FSMIFNet.git.

Medical image segmentation is crucial for improving healthcare outcomes. Convolutional neural networks (CNNs) have been widely applied in medical image analysis; however, their inherent inductive biases limit their ability to capture global contextual information. Vision transformer (ViT) architectures address this limitation by leveraging attention mechanisms to model global relationships; however, they typically require large-scale datasets for effective training, which is challenging in the field of medical imaging due to limited data availability. This study aimed to integrate the advantages of CNN and ViT architectures to improve segmentation performance on small-scale medical image datasets. In this study, we established a U-shaped network architecture based on a Transformer-assisted convolutional neural network (TAC-UNet). The TAC-UNet is primarily composed of a hybrid structure integrating CNN and Transformer components. Specifically, the hybrid architecture follows a dual-path design in which the Transformer branch continuously conveys global contextual information to the CNN backbone. This allows the CNN backbone to enhance its global perception while building on the local features it extracts, thereby improving its ability to comprehend complex image structures. A channel cross-attention (CCA) module is also incorporated as a bridge between the encoder and decoder to better reconcile the semantic discrepancies between them. Detailed experiments on three public datasets were conducted. Specifically, our model was trained on 30 images from the Multi-organ Nucleus Segmentation (MoNuSeg) training dataset, 85 images from the Gland Segmentation (GlaS) training dataset, and 551 images from the Computer Vision Center Colorectal Cancer-Clinic Database (CVC-ClinicDB) dataset. We evaluated the performance of our model on the corresponding test sets. Our TAC-UNet achieved the best Dice scores (80.36%, 90.70%, and 91.81% on the MoNuSeg, GlaS, and CVC-ClinicDB datasets, respectively) of all the models. Compared to other CNN-based, Transformer-based, and hybrid methods, the TAC-UNet demonstrated significantly superior segmentation performance. Our TAC-UNet model showed advanced segmentation performance on small-scale medical image datasets. The detailed experimental results showed the effectiveness of the method. Our model's code is available at: https://github.com/hejlhello/TAC-UNet.

Medical image segmentation tasks hitherto have achieved excellent progresses with large-scale datasets, which empowers us to train potent deep convolutional neural networks (DCNNs). However, labeling such large-scale datasets is laborious and error-prone, which leads the noisy (or incorrect) labels to be an ubiquitous problem in the real-world scenarios. In addition, data collected from different sites usually exhibit significant data distribution shift (or domain shift). As a result, noisy label and domain shift become two common problems in medical imaging application scenarios, especially in medical image segmentation, which degrade the performance of deep learning models significantly. In this paper, we identify a novel problem hidden in medical image segmentation, which is unsupervised domain adaptation on noisy labeled data, and propose a novel algorithm named "Self-Cleansing Unsupervised Domain Adaptation" (S-CDUA) to address such issue. S-CUDA sets up a realistic scenario to solve the above problems simultaneously where training data (i.e., source domain) not only shows domain shift w.r.t. unsupervised test data (i.e., target domain) but also contains noisy labels. The key idea of S-CUDA is to learn noise-excluding and domain invariant knowledge from noisy supervised data, which will be applied on the highly corrupted data for label cleansing and further data-recycling, as well as on the test data with domain shift for supervised propagation. To this end, we propose a novel framework leveraging noisy-label learning and domain adaptation techniques to cleanse the noisy labels and learn from trustable clean samples, thus enabling robust adaptation and prediction on the target domain. Specifically, we train two peer adversarial networks to identify high-confidence clean data and exchange them in companions to eliminate the error accumulation problem and narrow the domain gap simultaneously. In the meantime, the high-confidence noisy data are detected and cleansed in order to reuse the contaminated training data. Therefore, our proposed method can not only cleanse the noisy labels in the training set but also take full advantage of the existing noisy data to update the parameters of the network. For evaluation, we conduct experiments on two popular datasets (REFUGE and Drishti-GS) for optic disc (OD) and optic cup (OC) segmentation, and on another public multi-vendor dataset for spinal cord gray matter (SCGM) segmentation. Experimental results show that our proposed method can cleanse noisy labels efficiently and obtain a model with better generalization performance at the same time, which outperforms previous state-of-the-art methods by large margin. Our code can be found at https://github.com/zzdxjtu/S-cuda.

Numerous transformer-based medical image segmentation methods have been proposed and achieved good segmentation results. However, it is still a challenge to train and deploy transformer networks to mobile medical devices due to a large number of model parameters. To resolve the training and model parameter problems, in this paper, we propose a Transformer-based network for Medical Image Segmentation using Knowledge Distillation named MISTKD. The MISTKD consists of a teacher network and a student network. It achieves comparable performance to state-of-the-art transformer works using fewer parameters by employing the teacher network to train the student network. The training can be implemented by extracting the sequence in the teacher and student encoder networks during the training procedure. The losses between sequences are further calculated, thus the student network can learn from the teacher network. The experimental results on Synapse show that the proposed work achieves competitive performance using only one-eighth parameters.

In recent years, there have been several solutions to medical image segmentation, such as U-shaped structure, transformer-based network, and multi-scale feature learning method. However, their network parameters and real-time performance are often neglected and cannot segment boundary regions well. The main reason is that such networks have deep encoders, a large number of channels, and excessive attention to local information rather than global information, which is crucial to the accuracy of image segmentation. Therefore, we propose a novel multi-branch medical image segmentation network MBSNet. We first design two branches using a parallel residual mixer (PRM) module and dilate convolution block to capture the local and global information of the image. At the same time, a SE-Block and a new spatial attention module enhance the output features. Considering the different output features of the two branches, we adopt a cross-fusion method to effectively combine and complement the features between different layers. MBSNet was tested on five datasets ISIC2018, Kvasir, BUSI, COVID-19, and LGG. The combined results show that MBSNet is lighter, faster, and more accurate. Specifically, for a 320 times 320 input, MBSNet’s FLOPs is 10.68G, with an F1-Score of 85.29% on the Kvasir test dataset, well above 78.73% for UNet++ with FLOPs of 216.55G. We also use the multi-criteria decision making method TOPSIS based on F1-Score, IOU and Geometric-Mean (G-mean) for overall analysis. The proposed MBSNet model performs better than other competitive methods. Code is available at https://github.com/YuLionel/MBSNet.

Medical image segmentation is an essential process in disease analysis and diagnosis, in which medical images are divided into specific areas of anatomic or pathological structures. However, this process has challenges, such as the quality, variability, and complexity of medical images. Thus, we propose a medical image segmentation method using the Convolutional Neural Network (CNN) and the Histogram Equalization (HE) image preprocessing. We evaluated medical image segmentation using 2 secondary datasets, namely Lung CT-Scan and Chest X-Rays, with 267 and 3616 images, respectively. The HE method uses an averaging of the optimal cumulative distribution function (CDF) values with a range of 0 to 39. The experimental results show that adding the HE method can increase the accuracy of CNN on the Lung CT-Scan and Chest X-rays data sets, respectively, by 0.73 percentage points from 91.28% to 92.08 % and 1.23 percentage points from 95.56% to 96.85% for the training process. The results of the testing process (validation) have an increase in accuracy of 2.82 percentage points from 89.77% to 92.59% and 0.91 percentage points from 96.06% to 96.97%. Implementing the HE method increases accuracy in CNN medical image segmentation based on the value of dice similarity coefficient (DSC) and structural similarity index measurement (SSIM) close to 0.95.

Deep learning has achieved great success in the field of computer vision, and the precision in image classification and image detection has surpassed humans. Therefore, this paper combines deep learning and medical image segmentation, focusing on how to improve the accuracy and speed of segmentation algorithm of medical exercise rehabilitation image. Aiming at the shortcomings of traditional medical image recognition methods, a medical exercise rehabilitation image segmentation algorithm based on hierarchical features of convolutional neural networks is proposed, this paper calls it as hierarchical features of convolutional neural networks (HFCNN). The algorithm firstly samples the convolution output of multiple layers in the convolutional neural network to a unified scale and combines them to construct a hierarchical feature. This hierarchical feature combines the structural information of objects contained in the shallow layer of the network with the semantic information of objects contained in the deep layers of the network, so it has a strong ability to express. Secondly, the image can be segmented into multiple super pixels by the super pixel segmentation algorithm. The classifier is trained using the hierarchical features of the super pixel, and then the classification result is mapped back to the pixel. Finally, a fully connected conditional random field algorithm including one-potential potential energy and paired potential energy is constructed. The corresponding energy function is used to smooth the classification result of the pixel, and the regional consistency and continuity of the pixel mark are improved. Compared with many classical convolutional neural network algorithms, this algorithm not only accelerates the network convergence speed, shortens the training time, but also significantly improves the accuracy of segmentation algorithm of medical exercise rehabilitation image, showing good practical value.

Gathering labeled data is one of the most time-consuming and expensive tasks in supervised machine learning. In practical applications, there are usually quite limited labeled training samples but abundant unlabeled data that is easy to collect. Semi-supervised learning and active learning are two important techniques for learning a discriminative classification model when labeled data is scarce. However, unlabeled data with significant noises and outliers cannot be well exploited and usually worsen the performance of semi-supervised learning and the performance of active learning also needs a powerful initial classifier learned from the quite limited labeled training data. In order to solve the above issues, in this paper we proposed a novel model of semi-supervised dictionary active learning (SSDAL), which aims to integrate semi-supervised learning and active learning to effectively use all the training data. In particular, two criterions based on estimated class possibility are designed to select the unlabeled data with confident class estimation for semi-supervised learning and the informative unlabeled data for active learning, respectively. Extensive experiments are conducted to show the superior performance of our method in classification applications, e.g., handwritten digit recognition, face recognition and large-scale image classification.

Background: Today's machine-learning based dermatologic research has largely focused on pigmented/non-pigmented lesions concerning skin cancers. However, studies on machine-learning-aided diagnosis of depigmented non-melanocytic lesions, which are more difficult to diagnose by unaided eye, are very few.Objective: We aim to assess the performance of deep learning methods for diagnosing vitiligo by deploying Convolutional Neural Networks (CNNs) and comparing their diagnosis accuracy with that of human raters with different levels of experience.Methods: A Chinese in-house dataset (2,876 images) and a world-wide public dataset (1,341 images) containing vitiligo and other depigmented/hypopigmented lesions were constructed. Three CNN models were trained on close-up images in both datasets. The results by the CNNs were compared with those by 14 human raters from four groups: expert raters (>10 years of experience), intermediate raters (5–10 years), dermatology residents, and general practitioners. F1 score, the area under the receiver operating characteristic curve (AUC), specificity, and sensitivity metrics were used to compare the performance of the CNNs with that of the raters.Results: For the in-house dataset, CNNs achieved a comparable F1 score (mean [standard deviation]) with expert raters (0.8864 [0.005] vs. 0.8933 [0.044]) and outperformed intermediate raters (0.7603 [0.029]), dermatology residents (0.6161 [0.068]) and general practitioners (0.4964 [0.139]). For the public dataset, CNNs achieved a higher F1 score (0.9684 [0.005]) compared to the diagnosis of expert raters (0.9221 [0.031]).Conclusion: Properly designed and trained CNNs are able to diagnose vitiligo without the aid of Wood's lamp images and outperform human raters in an experimental setting.