Empirical Analysis of Knowledge Representation for Anime Recommendation Using Graph Neural Networks

Knowledge graphs (KGs) have transformed data management within the manufacturing industry, offering effective means for integrating disparate data sources through shared and structured conceptual schemas. However, harnessing the power of KGs can be daunting for non-experts, as it often requires formulating complex SPARQL queries to retrieve specific information. With the advent of Large Language Models (LLMs), there is a growing potential to automatically translate natural language queries into the SPARQL format, thus bridging the gap between user-friendly interfaces and the sophisticated architecture of KGs. The challenge remains in adequately informing LLMs about the relevant context and structure of domain-specific KGs, e.g., in manufacturing, to improve the accuracy of generated queries. In this paper, we evaluate multiple strategies that use LLMs as mediators to facilitate information retrieval from KGs. We focus on the manufacturing domain, particularly on the Bosch Line Information System KG and the I40 Core Information Model. In our evaluation, we compare various approaches for feeding relevant context from the KG to the LLM and analyze their proficiency in transforming real-world questions into SPARQL queries. Our findings show that LLMs can significantly improve their performance on generating correct and complete queries when provided only the adequate context of the KG schema. Such context-aware prompting techniques help LLMs to focus on the relevant parts of the ontology and reduce the risk of hallucination. We anticipate that the proposed techniques help LLMs to democratize access to complex data repositories and empower informed decision-making in manufacturing settings.

In the current development of large language models (LLMs), it is important to ensure the accuracy and reliability of the underlying data sources. LLMs are critical for various applications, but they often suffer from hallucinations and inaccuracies due to knowledge gaps in the training data. Knowledge graphs (KGs), as a powerful structural tool, could serve as a vital external information source to mitigate the aforementioned issues. By providing a structured and comprehensive understanding of real-world data, KGs enhance the performance and reliability of LLMs. However, it is common that errors exist in KGs while extracting triplets from unstructured data to construct KGs. This could lead to degraded performance in downstream tasks such as question-answering and recommender systems. Therefore, anomaly detection in KGs is essential to identify and correct these errors. This article presents an anomaly detection algorithm in knowledge graphs with dual-channel learning (ADKGD). ADKGD leverages a dual-channel learning approach to enhance representation learning from both the entity-view and triplet-view perspectives. Furthermore, using a cross-layer approach, our framework integrates internal information aggregation and context information aggregation. We introduce a kullback-leibler (KL)-loss component to improve the accuracy of the scoring function between the dual channels. To evaluate ADKGD’s performance, we conduct empirical studies on three real-world KGs: WN18RR, FB15K, and NELL-995. Experimental results demonstrate that ADKGD outperforms state-of-the-art anomaly detection algorithms. The source code and datasets are publicly available at https://github.com/csjywu1/ADKGD .

This paper investigates the impact of knowledge extraction methods on the effectiveness of RAG (Retrieval-Augmented Generation) systems that utilize knowledge graphs. It highlights that the quality of the knowledge graph, which is formed using various knowledge extraction methods, is crucial for overcoming limitations of large language models (LLMs), such as “hallucinations”. The paper analyzes the architectures of LightRAG and GraphRAG, emphasizing that the selection of an optimal knowledge extraction strategy depends on specific tasks and the subject area. LLMs have advanced significantly, but they have limitations, including generating factually incorrect information (“hallucinations”) and possessing “outdated knowledge”. RAG systems were proposed to address these issues by combining LLMs with external knowledge bases. This approach reduces hallucinations, ensures factual accuracy, solves the problem of outdated knowledge, and increases transparency. Knowledge graphs are powerful tools for structuring information, consisting of entities (nodes) and relations (edges). They enhance RAG systems by enabling more precise and contextually grounded retrieval compared to keyword-based searches. The quality of a knowledge graph depends on the knowledge extraction methods used, which include named entity recognition (NER), relation extraction (RE), entity linking (EL), and event extraction. Different methods, such as rule-based, classical machine learning, and deep learning approaches, have varying trade-offs in terms of accuracy, completeness, and scalability. Entity linking and knowledge graph completion are also crucial for accuracy and richness. LightRAG and GraphRAG are two main graph-based RAG systems. LightRAG uses the knowledge graph as a quick reference, requiring high precision in knowledge extraction to avoid noise degradation. GraphRAG uses the knowledge graph as a domain model, where completeness of extracted knowledge is more critical, though systematic errors are still harmful. Both systems rely on LLMs for knowledge extraction, which makes them dependent on the LLM’s quality and the size of document fragments processed. The theoretical analysis confirms that the effectiveness of RAG systems is critically dependent on knowledge extraction methods. The quality, completeness, and accuracy of the knowledge graph directly influence the RAG system’s ability to provide relevant, accurate, and truthful answers. Different RAG system architectures like LightRAG and GraphRAG have distinct requirements for knowledge graph characteristics, prioritizing either accuracy or completeness in knowledge extraction.

Collaborative filtering and neural recommendation models have advanced substantially over the past decade, yet they frequently struggle to capture the fine-grained structure of user preferences and the rich, multi-relational dependencies among items. Knowledge graph-based methods provide a principled means of representing such structured information; however, systematic mechanisms for combining structured reasoning with heterogeneous recommendation signals remain relatively underexplored. In this work, we introduce KGERA (Knowledge Graph Enhanced Reasoning Architecture), a recommendation framework that augments a multi-relational knowledge graph with an explicit reasoning module to enhance ranking quality through test-time inference. We construct a unified knowledge graph encoding diverse item relationships, including genre co-membership, creator-level associations, and data-driven similarity links, and apply structured reasoning on this graph to compute contextualized recommendation scores. Unlike approaches that require expensive large language model inference, KGERA performs lightweight, interpretable reasoning exclusively at inference time using embedding-based computations, allowing the system to adapt dynamically to evolving user preference signals without retraining. The reasoning component is coupled with nine complementary recommendation strategies through a learned ensemble that integrates collaborative filtering (ItemKNN), graph neural networks (LightGCN), self-supervised graph learning (SGL, SimGCL), neural collaborative filtering (NCF), knowledge graph embeddings (TransE), content-based filtering (TextProxy), and popularity-based signals (PopRec) into a single predictive model. Experiments on MovieLens-1M demonstrate that KGERA significantly outperforms strong baselines, including recent self-supervised methods from SIGIR 2021-2022, achieving improvements of 52.83% in NDCG@10, 50.24% in Recall@10, and 54.62% in MRR@10 over the best baseline. Comprehensive validation through leave-one-out ablation studies, threshold sensitivity analysis, 5-fold cross-validation (CV = 4.84%), and stratification experiments across user activity levels (77.5%–85.6% improvement for low/medium activity users), item popularity tiers (114.2% improvement for medium-popularity items), and content genres demonstrates the robustness and generalizability of our approach. All improvements are statistically significant with $$p < 0.001$$ under paired t-tests. Collectively, these results indicate that explicit test-time reasoning over structured knowledge provides a computationally efficient and interpretable direction for advancing the design of next-generation recommender systems.

In today’s rapidly evolving business landscape, Artificial Intelligence (AI), and specifically Large Language Models (LLMs), are redefining how organizations operate, make decisions, and engage with customers. AI-driven technologies have become indispensable, providing businesses with powerful tools to streamline operations, derive actionable insights from vast data, and foster more meaningful customer interactions. For business leaders, scholars, and practitioners alike, understanding the transformative potential of AI isn’t just advantageous—it’s essential to staying competitive in an increasingly data-driven world.This editorial delves into recent scholarly advancements in LLM applications within business contexts, analyzing studies that explore AI’s potential across various domains, from decision support to creative industries. By introducing a structured framework, this editorial highlights key insights and contributions from recent studies, assessing their value to academia and industry. The following comparative analysis sheds light on how these innovations shape our understanding of AI’s role in business while pointing to future research directions.Puyt and Madsen's (2024) study stands out as a foundational exploration of LLM accuracy, assessing ChatGPT-4's ability to recount the history of the SWOT analysis-a vital business strategy tool. Their findings reveal that, while ChatGPT-4 effectively conveys general concepts, it struggles with detailed historical information, often producing inaccuracies or "hallucinations." This gap underscores the need for LLMs to be trained with verified academic data, particularly for strategic business applications that demand precision. This study not only contributes to the literature by proposing methods to evaluate AI accuracy in historical contexts but also highlights the importance of rigorous information vetting in industry settings where reliability is crucial.In contrast, Raikov et al. (2024) explore a hybrid intelligence model that combines LLM capabilities with explainable AI (XAI) principles to enhance human-machine collaboration. Their approach emphasizes cognitive semantics, improving transparency and decision-making efficiency. The hybrid model's real-time adaptability addresses the needs of complex, regulated industries such as finance and healthcare, where trust in AI decisions is paramount. Academically, this study provides a valuable addition to XAI literature by demonstrating how LLMs can bridge the gap between AI autonomy and human oversight, making it a model for future human-AI interactions in complex business environments.Another significant study by Mariotti and colleagues (2024) examines the integration of LLMs with enterprise knowledge graphs to enhance data-driven decision-making. By enabling organizations to leverage knowledge graphs for more accurate and scalable data retrieval, this research provides a robust framework for businesses seeking efficient knowledge management systems. The academic contribution here lies in advancing the dialogue between LLMs and knowledge graphs, emphasizing ethical data handling and quality standards essential for industry applications. For enterprises, the study offers practical solutions to achieve streamlined data management, balancing automation with privacy and security. 2024) take a different approach, investigating LLMs' role in creative industries, specifically within fashion design. They introduce a hybrid intelligence model that supports creative processes, allowing AI to complement rather than replace human ingenuity. While LLMs in this field demonstrate potential in automating repetitive design tasks and enhancing customer personalization, the study reveals limitations in AI's ability to handle spatial and stylistic nuances. This study's academic contribution lies in promoting human-AI co-creation, inspiring further research into AI applications across diverse creative sectors, including media and marketing.Collectively, these studies not only illuminate LLMs' transformative potential in business but also highlight critical ethical and operational considerations. Ensuring accuracy, transparency, and data privacy are vital to responsibly integrating AI into business workflows. Future research should focus on enhancing LLM accuracy, refining hybrid intelligence models, and exploring creative AI applications, all while maintaining ethical standards. As LLMs evolve, interdisciplinary collaborations will be essential to harness their full potential, making AI an ethical, effective, and innovative force in the business world.

Multitype view of knowledge contrastive learning for recommendation

Large Language Models (LLMs) face significant challenges when attempting to utilize knowledge not encoded during pre-training. In-context learning (ICL) addresses this limitation by embedding relevant information directly into prompts, enabling LLMs to leverage external knowledge without updating their parameters. Recent advances have explored integrating knowledge graph (KG) information into prompts, taking advantage of the structured and factual representations of entities and relationships that KGs provide. A common approach involves identifying key concepts in a task, grounding them to KG nodes, extracting ego-subgraphs centered on these concepts, and incorporating them into prompts. However, not all subgraphs are equally relevant to the task, and selecting appropriate knowledge remains a critical challenge, as irrelevant or noisy subgraphs can reduce model accuracy. This study investigates how KG-based information related to task-specific concepts influences LLM performance on multiple-choice question answering (MCQA) tasks. We implement a four-stage pipeline that (1) identifies key concepts from questions and grounds them in the KG, (2) extracts individual ego-subgraphs for each concept, (3) integrates these subgraphs into prompts, and (4) evaluates their impact on LLM reasoning via probability scoring. Our analysis highlights which concept-specific subgraphs enhance performance, which introduce misleading information, and which have neutral effects. We show that carefully selected KG subgraphs can substantially outperform others in semantic relevance. Furthermore, we examine how the size and connectivity of selected KG subgraphs influence model performance. Overall, this work deepens understanding of KG-based knowledge selection in ICL and informs the design of more effective, targeted prompting strategies. This project's source code is publicly available at https://github.com/maryam-ghanbari/InformativenessOfKGs.

This paper explores the integration of dynamic knowledge graphs (DKGs) and advanced AI techniques, such as large language models (LLMs) and graph neural networks (GNNs), for enhancing financial market analysis and risk management. By developing the Integrated Context Knowledge Graph Generator (ICKG) and the Financial Dynamic Knowledge Graph (FinDKG), the study demonstrates how these models can predict market trends, optimize investment strategies, and improve risk mitigation. The results highlight the superior performance of the KGTransformer model in link prediction tasks, showcasing its potential for more accurate and insightful financial decision-making.

Extracting information from unstructured and semi-structured geoscience literature is a crucial step in conducting geological research. The traditional machine learning extraction paradigm requires a substantial amount of high-quality manually annotated data for model training, which is time-consuming, labor-intensive, and not easily transferable to new fields. Recently, large language models (LLMs) (e.g., ChatGPT, GPT-4, and LLaMA), have shown great performance in various natural language processing (NLP) tasks, such as question answering, machine translation, and text generation. A substantial body of work has demonstrated that LLMs possess strong in-context learning (ICL) and even zero-shot learning capabilities to solve downstream tasks without specifically designed supervised fine-tuning. In this paper, we propose utilizing LLMs for geoscience literature information extraction. Specifically, we design a hierarchical PDF parsing pipeline and an automated knowledge extraction process, which can significantly reduce the need for manual data annotation, assisting geoscientists in literature data mining. For the hierarchical PDF parsing pipeline, firstly, a document layout detection model fine-tuned on geoscience literature is employed for layout detection, obtaining layout detection information for the document. Secondly, based on the document layout information, an optical character content parsing model is used for content parsing, obtaining the text structure and plain text corresponding to the content. Finally, the text structure and plain text are combined and reconstructed to ultimately obtain the parsed structured data. For the automated knowledge extraction process, firstly, the parsed long text is segmented into paragraphs to adapt to the input length limit of LLMs. Subsequently, a few-shot prompting method is employed for structured knowledge extraction, encompassing two tasks: attribute value extraction and triplet extraction. In attribute value extraction, prompts are generated automatically by the LLMs based on the subdomain and attribute names, facilitating the location and extraction of values related to subdomain attribute names in the text. For triplet extraction, the LLMs employ a procedural approach to entity extraction, entity type extraction, and relation extraction, following the knowledge graph structure pattern. Finally, the extracted structured knowledge is stored in the form of knowledge graphs, facilitating further analysis and integration of various types of knowledge from the literature. Our proposed approach turns out to be simple, flexible, and highly effective in geoscience literature information extraction. Demonstrations of information extraction in subdomains such as radiolarian fossils and fluvial facies have yielded satisfactory results. The extraction efficiency has significantly improved, and feedback from domain experts indicates a relatively high level of accuracy in the extraction process. The extracted results can be used to construct a foundational knowledge graph for geoscience literature, supporting the comprehensive construction and efficient application of a geoscience knowledge graph.

BackgroundIn recent years, large language models (LLMs) have shown promise in various domains, notably in biomedical sciences. However, their real-world application is often limited by issues like erroneous outputs and hallucinatory responses.ResultsWe developed the knowledge graph–based thought (KGT) framework, an innovative solution that integrates LLMs with knowledge graphs (KGs) to improve their initial responses by utilizing verifiable information from KGs, thus significantly reducing factual errors in reasoning. The KGT framework demonstrates strong adaptability and performs well across various open-source LLMs. Notably, KGT can facilitate the discovery of new uses for existing drugs through potential drug–cancer associations and can assist in predicting resistance by analyzing relevant biomarkers and genetic mechanisms. To evaluate the knowledge graph question answering task within biomedicine, we utilize a pan-cancer knowledge graph to develop a pan-cancer question answering benchmark, named pan-cancer question answering.ConclusionsThe KGT framework substantially improves the accuracy and utility of LLMs in the biomedical field. This study serves as a proof of concept, demonstrating its exceptional performance in biomedical question answering.

A knowledge graph (KG) consists of numerous triples, in which each triple, i.e., (head entity, relation, tail entity), denotes a real-world assertion. Many large-scale KGs have been developed, e.g., general-purpose KGs Freebase and YAGO. Also, lots of domain-specific KGs are emerging, e.g., COVID-19 KGs, biomedical KGs, and agricultural KGs. By embedding KGs into low-dimensional vectors, i.e., representations of entities and relations, we could integrate KGs into machine learning models and enhance the performance of many prediction tasks, including search, recommendations, and question answering. During the construction, refinement, embedding, and application of KGs, a variety of KG learning algorithms have been developed to handle challenges in various real-world scenarios. Moreover, graph neural networks have also brought new opportunities to KG learning. This workshop aims to engage with active researchers from KG communities, recommendation communities, natural language processing communities, and other communities, and deliver state-of-the-art research insights into the core challenges in KG learning.

The increasing reliance on Large Language Models (LLMs) for health information seeking can pose severe risks due to the potential for misinformation and the complexity of these topics. This paper introduces KnowNet a visualization system that integrates LLMs with Knowledge Graphs (KG) to provide enhanced accuracy and structured exploration. Specifically, for enhanced accuracy, KnowNet extracts triples (e.g., entities and their relations) from LLM outputs and maps them into the validated information and supported evidence in external KGs. For structured exploration, KnowNet provides next-step recommendations based on the neighborhood of the currently explored entities in KGs, aiming to guide a comprehensive understanding without overlooking critical aspects. To enable reasoning with both the structured data in KGs and the unstructured outputs from LLMs, KnowNet conceptualizes the understanding of a subject as the gradual construction of graph visualization. A progressive graph visualization is introduced to monitor past inquiries, and bridge the current query with the exploration history and next-step recommendations. We demonstrate the effectiveness of our system via use cases and expert interviews.

The automatic identification of the topology of power networks is important for the data-driven and situation-aware operation of power grids. Traditional methods of topology identification lack a data-tolerant mechanism, and the accuracy of their performance in terms of identification is thus affected by the quality of data. Topology identification is related to the link prediction problem. The graph neural network can be used to predict the state of unlabeled nodes (lines) through training on features of labeled nodes (lines) with fault tolerance. Inspired by the characteristics of the graph neural network, we applied it to topology identification in this study. We propose a method to identify the topology of a power network based on a knowledge graph and the graph neural network. Traditional knowledge graphs can quickly mine possible connections between entities and generate graph structure data, but in the case of errors or informational conflicts in the data, they cannot accurately determine whether the relationships between the entities really exist. The graph neural network can use data mining to determine whether a connection obtained between entities is based on their eigenvalues, and has a fault tolerance mechanism to adapt to errors and informational conflicts in the graph data, but needs the graph data as database. The combination of the knowledge graph and the graph neural network can compensate for the deficiency of the single knowledge graph method. We tested the proposed method by using the IEEE 118-bus system and a provincial network system. The results showed that our approach is feasible and highly fault tolerant. It can accurately identify network topology even in the presence of conflicting and missing measurement-related information.

Harnessing the unlimited potential of RNA-sequencing data requires efficient and scalable solutions. In this research, we explore the power of knowledge graphs to analyze variant-level information extracted from RNA-sequences of COVID-19 patients. We propose a unified knowledge graph specifically tailored to the real-world relationships amongst entities obtained from Variant Call Format (VCF) files, annotated VCF files using the SnpEff tool, and associated CADD scores files while also maintaining a level of generality that permits future extrapolation and expansion. Utilizing available graph storage such as Blazegraph, we establish a large, scalable knowledge graph containing billions of nodes and edges that not only enables efficient storage, querying, and dataset creation but also serves as a foundation for several downstream tasks. To demonstrate its versatility, we present two compelling case studies using two different subsets of the graph, one containing 73 million nodes and 112 million edges and the other graph containing 1 million nodes and 2 million edges and employ graph machine learning techniques for node classification tasks. Several challenges, such as efficient scalability, capturing real-world knowledge at a large scale, and attaining a Graph Neural Network (GNN) with good performance and evaluation metrics, have been considered and dealt with. We compare two GNN models, GraphSAGE and Graph Convolutional Network (GCN), to identify the range of raw scores it can belong to and the GraphSAGE model to identify the deleteriousness of a variant using different model hyperparameter settings. Through the experiments conducted, we demonstrate that neighborhood knowledge can tremendously aid the model in learning and that the GraphSAGE model outperforms GCN for the CADD category node classification task. By seamlessly integrating a variety of RNA-seq genomic information into a coherent knowledge graph framework, our approach not only addresses the immediate challenges of accessing and parsing variant-level analysis but also lays the groundwork for future advancements using knowledge graphs in genomic research. Finally, we demonstrate the workings of our tool named VariantKG and present usage scenarios, namely, graph enrichment, graph creation, and graph machine learning and inference.

Drug repurposing (DR) offers a promising alternative to the high cost and low success rate of traditional drug development, especially for complex diseases like Alzheimer’s disease (AD). This study addressed DR for AD from three key angles: (1) demonstrating how disease-specific knowledge graphs can improve DR performance, (2) evaluating the role of large language models (LLMs) in enhancing the usability and efficiency of these graphs, and (3) assessing whether Graph-of-Thoughts (GoT)-enhanced LLMs, when integrated with AD knowledge graphs, can outperform traditional machine learning and LLM-based approaches. We tested five distinct DR strategies (DR1–DR5) for AD: DR1, a machine learning method using TxGNN; DR2, a machine learning model leveraging the Alzheimer’s KnowledgeBase (AlzKB); DR3, an LLM-based chatbot built on AlzKB; DR4, our ESCARGOT framework combining GoT-enhanced LLMs with AlzKB; and DR5, a general reasoning-driven LLM approach. Results showed that AlzKB significantly improved DR outcomes. ESCARGOT further enhanced performance while reducing the need for coding or advanced expertise in knowledge graph analysis. Because the architecture of AlzKB is easily adaptable to other diseases and ESCARGOT can integrate with various knowledge graph platforms, this framework offers a broadly applicable, innovative tool for accelerating drug discovery through repurposing.Supplementary InformationThe online version contains supplementary material available at 10.1186/s13040-025-00466-5.