Individual Tree Delineation in Deciduous Forest Areas with LiDAR Point Clouds

Large trees are important to a wide variety of wildlife, including many species of conservation concern, such as the California spotted owl (Strix occidentalis occidentalis). Light detection and ranging (LiDAR) has been successfully utilized to identify the density of large‐diameter trees, either by segmenting the LiDARpoint cloud into individual trees, or by building regression models between variables extracted from the LiDARpoint cloud and field data. Neither of these methods is easily accessible for most land managers due to the reliance on specialized software, and much available LiDARdata are being underutilized due to the steep learning curve required for advanced processing using these programs. This study derived a simple, yet effective method for estimating the density of large‐stemmed trees from the LiDARcanopy height model, a standard raster product derived from the LiDARpoint cloud that is often delivered with the LiDARand is easy to process by personnel trained in geographic information systems (GIS). Ground plots needed to be large (1 ha) to build a robust model, but the spatial accuracy of plot center was less crucial to model accuracy. We also showed that predicted large tree density is positively linked to California spotted owl nest sites.

Automated feature extraction based on prototypes is only partially successful when applied to remotely sensed imagery of natural scenes due to the complexity and unpredictability of the shape and geometry of natural features. Here, a new method is developed for extracting the locations of treetops by applying GIS (Geographical Information System) overlay techniques and morphological functions to high spatial resolution airborne imagery. This method is based on the geometrical and spatial properties of tree crowns. Airborne data of the study site in the New Forest, UK included colour aerial photographs, LIDAR (Light Detection And Ranging) and ATM (Airborne Thematic Mapper) imagery. A DEM (Digital Elevation Model) was generated from LIDAR data and then subtracted from the original LIDAR image to create a Canopy Height Model (CHM). A set of procedures using image contouring and the manipulation of the resulting polygons was implemented to extract treetops from the aerial photographs and the CHM. Criteria were developed and threshold values were set using a supervised approach for the acceptance or rejection of features based on field knowledge. Tree species were mapped by classifying the ATM data and these data were co‐registered with the treetop layer. For broadleaved deciduous plantations the success of treetop extraction using aerial photographs was 91%, but was much lower using LIDAR data. For semi‐natural forests, the LIDAR produced better results than the aerial photographs with a success of 80%, which was considered high, given the complexity of these uneven aged stands. The methodology presented here is easy to apply as it is implemented within a GIS and the final product is an accurate map with information about the location, height and species of each tree.

Classification of species at the individual tree level would be beneficial to many applications including forest landscape visualization, forest management, and biodiversity monitoring. This article develops a patch-based classification algorithm of individual tree species based on convolutional neural network. The individual trees are first detected using the local maximum method from the canopy height model, as derived from light detection and ranging (LiDAR) data. The detected individual trees are then cropped into patches for classification based on the tree apexes, and three spatial scale image patches are chosen for analysis and discussion. A modified ResNet50 deep network is further employed for the cropped individual tree patches classification. The patch-based method accounts for the contexture information of a tree and does not require the feature selection or the feature reduction processes. About 1388 training samples including Ficus microcarpa Linn. f., Delonix regia, Chorisia speciosa A.St.-Hil., Dimocarpus longan Lour., Musa nana Lour., Carica papaya, and Others (the other tree species except the above six) were collected from both field work and visual interpretation. Aerial images, LiDAR data, and Worldview images were used for the tree species classification. For 362 test tree samples, the results of patch size 64 achieve the best accuracies, and the proposed method outperforms the traditional machine learning method with the overall accuracy of 89.06% + 0.58% using aerial images only. Transferability Study to the Luhu Park also indicated the feasibility of our method. While challenges in individual tree detection and multisource data fusion remain, the solution shows the potential in characterizing tree species at the individual tree level using remote sensing data.

Above ground biomass estimation across forest types at different degradation levels in Central Kalimantan using LiDAR data

High-value timber species play an important economic role in forest management. The individual tree information for such species is necessary for practical forest management and for conservation purposes. Digital aerial photogrammetry derived from an unmanned aerial vehicle (UAV-DAP) can provide fine spatial and spectral information, as well as information on the three-dimensional (3D) structure of a forest canopy. Light detection and ranging (LiDAR) data enable area-wide 3D tree mapping and provide accurate forest floor terrain information. In this study, we evaluated the potential use of UAV-DAP and LiDAR data for the estimation of individual tree location and diameter at breast height (DBH) values of large-size high-value timber species in northern Japanese mixed-wood forests. We performed multiresolution segmentation of UAV-DAP orthophotographs to derive individual tree crown. We used object-based image analysis and random forest algorithm to classify the forest canopy into five categories: three high-value timber species, other broadleaf species, and conifer species. The UAV-DAP technique produced overall accuracy values of 73% and 63% for classification of the forest canopy in two forest management sub-compartments. In addition, we estimated individual tree DBH Values of high-value timber species through field survey, LiDAR, and UAV-DAP data. The results indicated that UAV-DAP can predict individual tree DBH Values, with comparable accuracy to DBH prediction using field and LiDAR data. The results of this study are useful for forest managers when searching for high-value timber trees and estimating tree size in large mixed-wood forests and can be applied in single-tree management systems for high-value timber species.

A second-generation Gamma Remote Sensing Portable RAdio Detection and Ranging (RADAR) Interferometer (GPRI-II) and a Lieca C-10 LIght Detection and Ranging (LIDAR) were employed to monitor the volume change behavior of two thin compacted clay test sections at the University of Arkansas Cato Springs Research Center (UACRSC). The viability of using remote sensing methods to accurately identify and quantify deformation associated with expansive clay behavior was evaluated. Two 464.52 m2 (5,000 ft2) sections consisting of 20.3 cm (8 inches) thick compacted clay layer underlain by a 5.1 cm (2 inches) thick sand drainage blanket were constructed. One test section was amended with three (Phase 1) and six (Phase 2) percent sodium bentonite. Four LIDAR and 355 RADAR observations were captured from the roof of the UACSRC building between January and July, 2012. Multiple RADAR images were captured on a weekly basis and after significant precipitation events. RADAR measurements, obtained by calculating the interferometric phase difference between coregistered temporally separated RADAR images, were used to determine topography and deformation. LIDAR measurements, as obtained from LIDAR point clouds, were also used to determine topography and deformation. To obtain accurate topography and deformation measurements the vegetation effects within the LIDAR data was removed. Deformation maps generated using both the RADAR and LIDAR methods are presented and compared. The results indicate both technologies are capable of detecting surface movements associated with expansive clay behavior. Moreover, the surface movements associated with expansive clay behavior can be accurately quantified using the LIDAR device.

Routine bridge inspections require labor intensive and highly subjective visual interpretation to determine bridge deck surface condition. Light Detection and Ranging (LiDAR) a relatively new class of survey instrument has become a popular and increasingly used technology for providing as-built and inventory data in civil applications. While an increasing number of private and governmental agencies possess terrestrial and mobile LiDAR systems, an understanding of the technology’s capabilities and potential applications continues to evolve. LiDAR is a line-of-sight instrument and as such, care must be taken when establishing scan locations and resolution to allow the capture of data at an adequate resolution for defining features that contribute to the analysis of bridge deck surface condition. Information such as the location, area, and volume of spalling on deck surfaces, undersides, and support columns can be derived from properly collected LiDAR point clouds. The LiDAR point clouds contain information that can provide quantitative surface condition information, resulting in more accurate structural health monitoring. LiDAR scans were collected at three study bridges, each of which displayed a varying degree of degradation. A variety of commercially available analysis tools and an independently developed algorithm written in ArcGIS Python (ArcPy) were used to locate and quantify surface defects such as location, volume, and area of spalls. The results were visual and numerically displayed in a user-friendly web-based decision support tool integrating prior bridge condition metrics for comparison. LiDAR data processing procedures along with strengths and limitations of point clouds for defining features useful for assessing bridge deck condition are discussed. Point cloud density and incidence angle are two attributes that must be managed carefully to ensure data collected are of high quality and useful for bridge condition evaluation. When collected properly to ensure effective evaluation of bridge surface condition, LiDAR data can be analyzed to provide a useful data set from which to derive bridge deck condition information.

Single tree detection is important for monitoring tree plantations in order to estimate crop yield, which can be used for assessing food and biofuels. In the field of remote sensing, there have been studies regarding single tree extraction using Light Detection and Ranging (LiDAR) point cloud data. Canopy Height Model (CHM) can be simply derived from these LiDAR data where trees can be analysed using different physical characteristics such as tree crown width, and height. However, using these physical characteristics can’t be very useful for identifying which trees are within a plantation, a forest, or a single tree. This is the motivation for developing algorithms of automated differentiation of random trees from plantation trees. Object Based Image Analysis (OBIA) was used to acquire the locations of individual trees. Trees were separated from other land cover in the image using a CHM derived from LiDAR point cloud data. Using watershed algorithm in eCognition, trees with good canopy spacing was easily distinguished. A spatial point pattern analysis was done from the extracted locations of trees to differentiate regularly patterned points from randomly distributed points. Nearest neighbour statistics was done to provide measurement of the distribution of the extracted points. The Z-Score parameter from nearest neighbor was then added to the layers in eCognition as supplement to the available height derivatives such as mean, standard deviation, and different textural parameters. Supervised type of classification was used in order to classify the trees on the image. Training samples of each tree from the image were entered in Support Vector Machine (SVM) to classify the different trees. Two sets of validation were done to compare the results of using the object parameters only, and the object parameters and Z-Score. Addition of the Z-Score from the object parameters increased the obtained accuracy on both validation sets. Classification accuracy based on validation set 1 and set 2 increased by about 20% and 6%, respectively. Additional spatial pattern analysis methods and validation can further prove the use of such layers in improving classification of trees.

Civil engineering includes a wide range of applications that require three-dimensional (3D) information. With the advent of LiDAR (Light Detection And Ranging) technology, obtaining 3D terrain information accurately in a cost and time effective manner became more popular. In this paper, three case studies demonstrate the roles and applications of airborne LiDAR data including highway, transmission line and hydropower dam development projects. In first case study, the highway alignment was considerably changed after the initial design stage. LiDAR data was able to do the re-alignment survey quickly, allowing for prompt changes in design. In the next case study, a comparison is made between conventional transmission route alignment design and the design using PLS-CADD with LiDAR data. Utilizing the LiDAR data in PLSCADD allows transmission line engineers to model the construction costs of several alignments options effectively and efficiently compared to the conventional method. The last case study uses LiDAR for obtaining the necessary information for proposed dam. Using LiDAR data maximizes topological accuracy and volume measurements while minimizing survey time and costs. Furthermore, utilizing the multi-temporal LiDAR data can reveal valuable information such as topography changes. LiDAR survey technology has proven that it is the best method to capture accurate data from the earth surface which provides maximum density of topographical & digital imagery information for various applications.

Forest canopy openings are a key element of forest structure, influencing a host of ecological dynamics. Light detection and ranging (LiDAR) is the de-facto standard for measuring three-dimensional forest structure, but digital aerial photogrammetry (DAP) has emerged as a viable and economical alternative. We compared the performance of LiDAR and DAP data for characterizing canopy openings and no-openings across a 1-km2 expanse of boreal forest in northern Alberta, Canada. Structural openings in canopy cover were delineated using three canopy height model (CHM) alternatives, from (i) LiDAR, (ii) DAP, and (iii) a LiDAR/DAP hybrid. From a point-based detectability perspective, the LiDAR CHM produced the best results (87% overall accuracy), followed by the hybrid and DAP models (47% and 46%, respectively). The hybrid and DAP CHMs experienced large errors of omission (9–53%), particularly with small openings up to 20m2, which are an important element of boreal forest structure. By missing these, DAP and hybrid datasets substantially under-reported the total area of openings across our site (152,470 m2 and 159,848 m2, respectively) compared to LiDAR (245,920 m2). Our results illustrate DAP’s sensitivity to occlusions, mismatched tie points, and other optical challenges inherent to using structure-from-motion workflows in complex forest scenes. These under-documented constraints currently limit the technology’s capacity to fully characterize canopy structure. For now, we recommend that operational use of DAP in forests be limited to mapping large canopy openings, and area-based attributes that are well-documented in the literature.

Light Detection and Ranging (LiDAR) systems have been widely adopted for the acquisition of dense and accurate topographic data over extended areas. Although the utilization of this technology has increased in different applications, the development of standard methodologies for the quality control (QC) of LiDAR data has not followed the same trend. In other words, a lack in reliable, practical, cost-effective, and commonly acceptable QC procedures is evident. A frequently adopted procedure for QC is comparing the LiDAR data to ground control points. Aside from being expensive, this approach is not accurate enough for the verification of horizontal accuracy, unless specifically designed LiDAR targets are used. This paper is dedicated to providing accurate, economical, and convenient internal QC procedures for the evaluation of LiDAR data, which is captured from parallel flight lines. The underlying concept of the proposed methodologies is that, in the absence of systematic and random errors in system parameters and measurements, conjugate surface elements in overlapping strips should perfectly match each other. Consistent incompatibilities and the quality of fit between conjugate surface elements in overlapping strips can be used to detect systematic errors in the system parameters/measurements and to evaluate the noise level in the LiDAR point cloud, respectively. Experimental results from real data demonstrate that all the proposed methods, with one exception, produce compatible estimates of systematic discrepancies between the involved data sets, as well as good quantification of inherent noise.

A Light Detection and Ranging (LiDAR) sensor mounted on an Unmanned Aerial Vehicle (UAV) can map the overflown environment in point clouds. Mapped canopy heights allow for the estimation of crop biomass in agriculture. The work presented in this paper contributes to sensory UAV setup design for mapping and textual analysis of agricultural fields. LiDAR data are combined with data from Global Navigation Satellite System (GNSS) and Inertial Measurement Unit (IMU) sensors to conduct environment mapping for point clouds. The proposed method facilitates LiDAR recordings in an experimental winter wheat field. Crop height estimates ranging from 0.35–0.58 m are correlated to the applied nitrogen treatments of 0–300 . The LiDAR point clouds are recorded, mapped, and analysed using the functionalities of the Robot Operating System (ROS) and the Point Cloud Library (PCL). Crop volume estimation is based on a voxel grid with a spatial resolution of 0.04 × 0.04 × 0.001 m. Two different flight patterns are evaluated at an altitude of 6 m to determine the impacts of the mapped LiDAR measurements on crop volume estimations.

Individual tree level inventory performed using high density multi-return airborne Light Detection and Ranging (LiDAR) systems provides both internal and external geometric details on individual tree crowns. Among them, the parameters such as, the stem location, and Diameter at Breast Height of the stem (DBH) are very relevant for accurate biomass, and forest growth estimation. However, methods that can accurately estimate these parameters along the vertical canopy are lacking in the state of the art. Thus, we propose a method to locate and model the stem by analyzing the empty volume that appears within the 3D high density LiDAR point cloud of a conifer, due to the stem. In a high LiDAR density data, the points most proximal to the stem location in the upper half of the crown are very likely due to laser reflections from the stem and/or the branch-stem junctions. By locating accurately these points, we can define the lattice of points representing branch-stem junctions and use it to model the empty volume associated to the stem location. We identify these points by using a state-of-the-art internal crown structure modelling technique that models individual conifer branches in a high density LiDAR data. Under the assumption that conifer stem can be closely modelled using a cone shape, we regression fit a geometric shape onto the lattice of branch-stem junction points. The parameters of the geometric shape are used to accurately estimate the diameter at breast height, and height of the tree. The experiments were performed on a set of hundred conifers consisting of trees from six dominant European conifer species, for which the height and the DBH were known. The results prove the method to be accurate.

Spectral confusion among land cover classes is quite common, let alone in a complex and heterogenous system like the semi-arid Mediterranean environment; thus, employing new developments in remote sensing, such as multispectral imagery (MSI) captured by unmanned aerial vehicles (UAVs) and airborne light detection and ranging (LiDAR) techniques, with deep learning (DL) algorithms for land cover classification can help to address this problem. Therefore, we propose an image-based land cover classification methodology based on fusing multispectral and airborne LiDAR data by adopting CNN-based semantic segmentation in a semi-arid Mediterranean area of northeastern Aegean, Greece. The methodology consists of three stages: (i) data pre-processing, (ii) semantic segmentation, and (iii) accuracy assessment. The multispectral bands were stacked with the calculated Normalized Difference Vegetation Index (NDVI) and the LiDAR-based attributes height, intensity, and number of returns converted into two-dimensional (2D) images. Then, a hyper-parameter analysis was performed to investigate the impact on the classification accuracy and training time of the U-Net architecture by varying the input tile size and the patch size for prediction, including the learning rate and algorithm optimizer. Finally, comparative experiments were conducted by altering the input data type to test our hypothesis, and the CNN model performance was analyzed by using accuracy assessment metrics and visually comparing the segmentation maps. The findings of this investigation showed that fusing multispectral and LiDAR data improves the classification accuracy of the U-Net, as it yielded the highest overall accuracy of 79.34% and a kappa coefficient of 0.6966, compared to using multispectral (OA: 76.03%; K: 0.6538) or LiDAR (OA: 37.79%; K: 0.0840) data separately. Although some confusion still exists among the seven land cover classes observed, the U-Net delivered a detailed and quite accurate segmentation map.

Simulating realistic three‐dimensional (3D) forest scenes is useful in understanding the links between forest structure and ecosystem functions (e.g. radiative transfer). Light detection and ranging (LiDAR) technology provides useful 3D data for forest reconstructions since it can characterise 3D structures of individual trees and canopies. High‐density terrestrial LiDAR (terrestrial laser scanning, TLS) is suitable for fine‐scale reconstructions but is limited to smaller forest plots; low‐density airborne LiDAR (airborne laser scanning, ALS) can cover larger areas but is only suitable for coarse‐scale reconstructions. How to take advantage of TLS and ALS to enable fine‐scale forest simulations in large areas needs to be studied. We propose a new voxel‐based method for forest simulations using the integration of TLS and ALS data. TLS data of representative reference trees are used to approximate the detailed architectures of the whole forest scene, with structural information on each individual tree extracted from ALS data. The high‐density point cloud data derived from TLS and ALS data are voxelised using high resolution solid voxels for scene representation. We tested the proposed method using two virtual forests (108 m × 108 m) and a real forest (300 m × 300 m) with conifer and broadleaf species. The physically based ray tracer (PBRT) was used to visualise the true virtual forest scenes, whereas voxel‐based radiative transfer (VBRT) was used to visualise the modelled forest scenes from LiDAR data. For the real forest scene, simulated and real ALS data were compared. Our results demonstrate that the images simulated by VBRT and PBRT are similar in the virtual forest scenes, with average radiance values of 1.02 and 1.72, respectively. In the real forest scene, the distributions of points and individual tree attributes (tree height, crown radius, and tree volume) derived from real and simulated ALS also match well, with Kullback–Leibler divergence ranging from 0.006 to 0.06. We conclude that the new method is capable of modelling fine‐scale 3D forests in large areas (over 1 ha) when TLS and ALS data are available, and it has good potential in studying the process of radiative transfer in conifer and broadleaf forests.