Integrating Bioinformatics and Machine Learning for Genomic Prediction in Chickens.

P125. Development of a novel ensemble machine learning algorithm for prediction of complications and readmission after anterior cervical spinal fusion

Performance evaluation of machine learning techniques in predicting cumulative absolute velocity

In the last two decades, machine learning (ML) methods have been widely used in digital soil mapping (DSM), but the regression kriging (RK) model which combines the advantages of the ML and kriging methods has rarely been used in DSM. In addition, due to the limitation of a single-model structure, many ML methods have poor prediction accuracy in undulating terrain areas. In this study, we collected the SOC content of 115 soil samples in a hilly farming area with continuous undulating terrain. According to the theory of soil-forming factors in pedogenesis, we selected 10 topographic indices, 7 vegetation indices, and 2 soil indices as environmental covariates, and according to the law of geographical similarity, we used ML and RK methods to mine the relationship between SOC and environmental covariates to predict the SOC content. Four ensemble models-random forest (RF), Cubist, stochastic gradient boosting (SGB), and Bayesian regularized neural networks (BRNNs)-were used to fit the trend of SOC content, and the simple kriging (SK) method was used to interpolate the residuals of the ensemble models, and then the SOC and residual were superimposed to obtain the RK prediction result. Moreover, the 115 samples were divided into calibration and validation sets at a ratio of 80%, and the tenfold cross-validation method was used to fit the optimal parameters of the model. From the results of four ensemble models: RF performed best in the calibration set (R2c = 0.834) but poorly in the validation set (R2v = 0.362); Cubist had good accuracy and stability in both the calibration and validation sets (R2c = 0.693 and R2v = 0.445); SGB performed poorly (R2c = 0.430 and R2v = 0.336); and BRNN had the lowest accuracy (R2c = 0.323 and R2v = 0.282). The results showed that the R2 of the four RK models in the validation set were 0.718, 0.674, 0.724, and 0.625, respectively. Compared with the ensemble models without superimposed residuals, the prediction accuracy was improved by 0.356, 0.229, 0.388, and 0.343, respectively. In conclusion, Cubist has high prediction accuracy and generalization ability in areas with complex topography, and the RK model can make full use of trends and spatial structural factors that are not easy to mine by ML models, which can effectively improve the prediction accuracy. This provides a reference for soil survey and digital mapping in complex terrain areas.

Satellite-based aerosol optical property retrieval over land, especially size-related parameters, is challenging. This study proposed a novel two-stage machine learning (ML) algorithm for retrieving aerosol optical depth (AOD), Ångström exponent (AE), fine mode fraction (FMF), and fine mode AOD (FAOD)) over land using MODIS observed reflectance. The new ML algorithm consists of three steps: (1) first, all samples extracted from AERONET measurements were used to train the ML model, (2) then, to reduce the extreme estimation bias of the model, divided low-value and high-value samples were used to train low-value and high-value ML models, respectively, and (3) finally, the three ML models were integrated into the final retrieval based on the weight interpolation. Independent site network validation results show that the new ML algorithm has a Pearson correlation coefficient (R) of 0.894 (0.638, 0.661, 0.865) and root mean square error (RMSE) of 0.146 (0.258, 0.245, 0.153) for the AOD (AE, FMF, FAOD) retrieval, which significantly outperforms the validation metrics of MODIS operational products, with AOD (AE, FMF, FAOD) RMSE of 0.130-0.156 (0.536-0.569, 0.313, 0.191). The inter-comparison of aerosol products shows that the spatial patterns of AOD, AE, FMF, and FAOD of the new ML algorithm are in good agreement with those of the MODIS and POLDER products. These results illustrate that the new ML algorithm has good performance and transferability and indicate the ability of ML methods to be applied to multispectral instruments (such as MODIS) to retrieve multiple aerosol properties.

Parameter importance assessment improves efficacy of machine learning methods for predicting snow avalanche sites in Leh-Manali Highway, India

Coastal aquifers are vital for sustaining ecosystems and providing freshwater for agriculture and domestic use. However, rising groundwater salinity in these regions demands innovative approaches for accurate modeling and prediction. In recent decades, machine learning (ML) and deep learning (DL) techniques have been extensively used across various water resource management fields, often yielding promising outcomes. This review examines the growing usage of ML and DL techniques in modeling groundwater salinity in coastal aquifers. The analysis is based on 104 peer-reviewed journal articles including the review articles indexed in PubMed, ScienceDirect, Google Scholar, Scopus, and SpringerLink using keywords like "saltwater intrusion", "machine learning", “deep learning”, and "groundwater salinity". The review discusses recent advancements, challenges, and future directions for improving ML model accuracy and applicability. Studies reveal an increasing reliance on ML techniques to predict groundwater salinity and manage seawater intrusion across various coastal geological settings. Researchers have employed a range of ML models, from traditional methods like Artificial Neural Networks and Adaptive Neuro Fuzzy Inference Systems to advanced DL-based models like Convolutional Neural Networks and Long Short-Term Memory Networks, often using ensemble methods to enhance accuracy. Key findings include the top-tier output of ensemble and optimized models, including Random Forest and Grasshopper Optimization Algorithm-XGBoost. These studies highlight the importance of model selection, input variable ranking, and computational efficiency, demonstrating ML's global relevance in environmental management. The review highlights the prospects of ML, DL, and ensemble models to redefine groundwater management in coastal aquifers, offering more effective and sustainable solutions to the challenges posed by groundwater salinity and saltwater intrusion. Future advancements will focus on further integrating DL, explainable artificial intelligence, and ensemble approaches, along with other innovative techniques, to explore sparsely studied variables, model new or unique study areas, and apply ML methods for managing groundwater salinity.

Artificial intelligence has been applied in wildfire science and management since the 1990s, with early applications including neural networks and expert systems. Since then, the field has rapidly progressed congruently with the wide adoption of machine learning (ML) methods in the environmental sciences. Here, we present a scoping review of ML applications in wildfire science and management. Our overall objective is to improve awareness of ML methods among wildfire researchers and managers, as well as illustrate the diverse and challenging range of problems in wildfire science available to ML data scientists. To that end, we first present an overview of popular ML approaches used in wildfire science to date and then review the use of ML in wildfire science as broadly categorized into six problem domains, including (i) fuels characterization, fire detection, and mapping; (ii) fire weather and climate change; (iii) fire occurrence, susceptibility, and risk; (iv) fire behavior prediction; (v) fire effects; and (vi) fire management. Furthermore, we discuss the advantages and limitations of various ML approaches relating to data size, computational requirements, generalizability, and interpretability, as well as identify opportunities for future advances in the science and management of wildfires within a data science context. In total, to the end of 2019, we identified 300 relevant publications in which the most frequently used ML methods across problem domains included random forests, MaxEnt, artificial neural networks, decision trees, support vector machines, and genetic algorithms. As such, there exists opportunities to apply more current ML methods — including deep learning and agent-based learning — in the wildfire sciences, especially in instances involving very large multivariate datasets. We must recognize, however, that despite the ability of ML models to learn on their own, expertise in wildfire science is necessary to ensure realistic modelling of fire processes across multiple scales, while the complexity of some ML methods such as deep learning requires a dedicated and sophisticated knowledge of their application. Finally, we stress that the wildfire research and management communities play an active role in providing relevant, high-quality, and freely available wildfire data for use by practitioners of ML methods.

The emergence of machine learning (ML) techniques has significantly improved the accuracy and efficiency in materials characterization. This paper reviews the application of ML algorithms in microstructural analysis and defect detection processes of aluminum castings. By leveraging ML methods, multiple ML models were trained to automatically identify and classify different types of casting defects and microstructural features. Advanced image processing techniques, combined with convolutional neural networks (CNNs), enable the detection of casting defects such as shrinkage porosity, oxides and multiscale microstructure features (i.e., eutectic phases and secondary dendrite arm spacing of aluminum). This study highlights the advantages of the developed ML models in the accuracy and reduction of measurement time in the lab and reducing the reliance on manual analysis and subjective judgment. The findings emphasize the significant impact of ML techniques on metallurgical research and industrial applications, enhancing the reliability and performance of material analysis tools.

Genomic selection (GS) offers a promising opportunity for selecting more efficient animals to use consumed energy for maintenance and growth functions, impacting profitability and environmental sustainability. Here, we compared the prediction accuracy of multi-layer neural network (MLNN) and support vector regression (SVR) against single-trait (STGBLUP), multi-trait genomic best linear unbiased prediction (MTGBLUP), and Bayesian regression (BayesA, BayesB, BayesC, BRR, and BLasso) for feed efficiency (FE) traits. FE-related traits were measured in 1156 Nellore cattle from an experimental breeding program genotyped for ~ 300 K markers after quality control. Prediction accuracy (Acc) was evaluated using a forward validation splitting the dataset based on birth year, considering the phenotypes adjusted for the fixed effects and covariates as pseudo-phenotypes. The MLNN and SVR approaches were trained by randomly splitting the training population into fivefold to select the best hyperparameters. The results show that the machine learning methods (MLNN and SVR) and MTGBLUP outperformed STGBLUP and the Bayesian regression approaches, increasing the Acc by approximately 8.9%, 14.6%, and 13.7% using MLNN, SVR, and MTGBLUP, respectively. Acc for SVR and MTGBLUP were slightly different, ranging from 0.62 to 0.69 and 0.62 to 0.68, respectively, with empirically unbiased for both models (0.97 and 1.09). Our results indicated that SVR and MTGBLUBP approaches were more accurate in predicting FE-related traits than Bayesian regression and STGBLUP and seemed competitive for GS of complex phenotypes with various degrees of inheritance.

Machine learning (ML) is being used to improve intrusion detection mechanisms and identification in cyber security. Network data volume scaling (with the help of Machine learning) — Automated analysis and pattern recognition for large amounts of network-data, thereby detection of anomalies / potentially malicious activities that escape current rule-based techniques. By training ML models on historical data, these models can learn benign network behavior as well the anomalies in them that may result from malicious activities. The purpose of this essay/report is to begin taking a look under the hood at how ML can be used for security threat detection and analysis in-networking on an ongoing basis. This paper covers the automation of ML algorithms to enhance network security. Given the current state of electronic threats and their evolution, traditional security methods are typically insufficient. ML can analyze large volumes of data, learn patterns from it and this makes it suitable to complement network defense mechanisms. It then discusses different ML applications in network cybersecurity: intrusion detection, anomaly detection, spam and malware analysis; which the paper characterizes. It analyzes the potential, benefits and constrains of major ML methods in network security like supervised learning; unsupervised learning and reinforcement-learning. Finally, this paper represents recent progress in the use and impact of ML techniques along with case studies.The paper discusses the existing difficulties in the field such as the necessity for datasets and the vulnerability of machine learning models to adversarial attacks.T he paper also highlights avenues for exploration by focusing on developing scalable security solutions based on machine learning that are resilient and flexible.The goal of this examination is to offer both researchers and industry professionals valuable perspectives into the opportunities and obstacles linked to utilizing machine learning, in the domain of network security. ML methods have potential to improve network security by addressing the challenges posed by the increasing cyber threats that traditional security measures struggle to combat effectively over time. One key strength of ML lies in its capacity to analyze datasets and identify intricate patterns efficiently. The research paper delves into applications of ML in enhancing network security. The list covers security tools like Intrusion Detection Systems (IDS) examining malware and phishing attempts as well as anomalies in network activity and user behavior analysis (UEBA). The study explores both supervised and unsupervised learning methods. How they are used for quick threat detection and response in real time scenarios.You will find case studies and recent developments that showcase the implementation and effectiveness of these strategies.In addition the article delves into the obstacles linked to using machine learning techniques in network security including the necessity, for datasets, The paper's goal is to give an enlightening summary to scholars and practitioners about how machine learning can be applied to network security in order to provide solutions that are robust, adaptive, and scalable. To this end, it touches on several relevant aspects. One is the threat posed by adversarial attacks on the sorts of models that are likely to be used in this context. Another is the imperative, deriving from both adversarial threat and model drift, that models needed in this context be available in a form usable for continuous update. Keywords: Network Security, machine learning (ML), Intrusion Detection Systems (IDS), entity behavior analytics (UEBA).

How Magic a Bullet Is Machine Learning for Credit Analysis? An Exploration with FinTech Lending Data

Predicting phenotypes from genomic mutations remains a major genetic challenge. Traditional statistical methods (such as GBLUP and BayesR) have limitations, including reliance on artificial prior assumptions, and hard to capture epistatic effects. Machine learning (ML) has emerged as a powerful alternative for genomic prediction; however, it often struggles with interpretability because of its black-box nature. Here, we evaluate 12 ML models alongside GBLUP and BayesR to identify key factors influencing genomic prediction performance across traits with different genetic architectures in multiple agricultural species, including pigs, chickens, horses, and maize, and we use a series of simulated data sets to assess the impacts of various parameters. Trait genetic architecture and feature selection are the primary determinants of predictive performance. Boosting algorithms outperform the other ML methods and can be further improved by refining biological feature engineering and optimizing the hyperparameters. We demonstrate how gene-related biometrics influence target traits and how accounting for interaction effects enhances prediction accuracy. In addition, we apply Shapley additive explanations (SHAP) to quantify the SNP additive and epistatic effects. To bridge the gap between algorithmic advancements and biological interpretability, we have developed artificial intelligence genomic prediction (AIGP), an open-source end-to-end toolkit for genomic prediction research. Our findings highlight the potential of ML for genomic prediction and emphasize the importance of explainable ML approaches, integration of prior information, and parameter optimization. The AIGP toolkit enables automated model optimization and interpretability, making ML-driven genomic selection more accessible and providing new tools to support genomic research.

Efficient seismic fragility analysis method utilizing ground motion clustering and probabilistic machine learning

This study provides an extensive review of over 200 journal papers focusing on Machine Learning (ML) algorithms’ use for promoting a sustainable management of the marine and coastal environments. The research covers various facets of ML algorithms, including data preprocessing and handling, modeling algorithms for distinct phenomena, model evaluation, and use of dynamic and integrated models. Given that machine learning modeling relies on experience or trial-and-error, examining previous applications in marine and coastal modeling is proven to be beneficial. The performance of different ML methods used to predict wave heights was analyzed to ascertain which method was superior with various datasets. The analysis of these papers revealed that properly developed ML methods could successfully be applied to multiple aspects. Areas of application include data collection and analysis, pollutant and sediment transport, image processing and deep learning, and identification of potential regions for aquaculture and wave energy activities. Additionally, ML methods aid in structural design and optimization and in the prediction and classification of oceanographic parameters. However, despite their potential advantages, dynamic and integrated ML models remain underutilized in marine projects. This research provides insights into ML’s application and invites future investigations to exploit ML’s untapped potential in marine and coastal sustainability.

Exploring machine learning trends in poverty mapping: A review and meta-analysis