The symbiotic relationship between soybean and rhizobia facilitates nodulation and nitrogen fixation, providing a sustainable nutrient supply for increasing crop yields and reducing chemical fertilizer use. However, comparative studies on the conservation and strain-specificity of host gene expression regulated by different rhizobial strains remain limited. Here, we performed a comparative analysis between the previously isolated strain, Bradyrhizobium ottawaense Bott 59, and the model strain, Bradyrhizobium diazoefficiens USDA 110. Symbiotic phenotypes were evaluated after inoculation, and a root transcriptomic analysis was conducted at 3 dpi to assess early molecular responses. At 21 dpi, Bott 59-inoculated plants outperformed plants inoculated with USDA 110 in nodule number, nitrogenase activity, and biomass. Transcriptomic analysis revealed conserved host responses to both rhizobial strains, including NIN-mediated signaling, AON signaling, and the biosynthesis of phenylpropanoids and brassinosteroids. Further analysis revealed that Bott 59 specifically induced the expression of genes involved in isoflavonoid and flavonoid biosynthesis, including those encoding I2H, and HI4OMT. Moreover, Bott 59 triggered more pronounced transcriptional reprogramming in auxin, cytokinin, and jasmonic acid signaling pathways, along with differential expression of a broader set of transcription factor genes. Collectively, this study systematically unravels the conserved and strain-specific transcriptional regulatory events underlying host–rhizobium interactions. Our findings provide valuable theoretical insights and transcriptomic resources for further dissecting the molecular mechanisms of symbiotic nitrogen fixation (SNF), as well as for the targeted genetic improvement of crop nodulation and nitrogen fixation efficiency.

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Maize ear rot, primarily caused by Fusarium verticillioides (Fusarium ear rot, FER) and Fusarium graminearum (Gibberella ear rot, GER), is a devastating disease that causes significant yield losses and mycotoxin contamination. Breeding resistant varieties is the most effective control strategy, but this requires the identification of stable genetic loci for resistance. In this study, we employed bulked segregant analysis (BSA) on two F2 mapping populations to identify quantitative trait loci (QTLs) conferring resistance to FER and GER. We identified five and eleven QTLs for FER and GER, respectively. Notably, chromosome 4 was identified as a major hotspot for resistance to both diseases, and there was a co-localization of the FER QTL (qFER4.05) and GER QTL (qGER4.05-1) within a 58.58–71.34 Mb interval on bin 4.05, suggesting a potential locus for broad-spectrum resistance. Within this overlapping region, we identified 18 high-confidence candidate genes, including genes encoding leucine-rich repeat receptor-like kinases (LRR-RLKs), remorin, cytochrome P450 monooxygenases, and wall-associated receptor kinase-like (WAKL) protein, all with established roles in plant defense. These findings advance the understanding of the genetic architecture of ear rot resistance and provide critical resources for marker-assisted breeding to develop maize hybrids with durable resistance to both FER and GER.

Holly (Ilex L.) is a genus of woody dioecious plants with substantial ecological and economic value. However, its high species diversity and morphological similarity make accurate identification challenging. To address this, we constructed a multi-taxon Ilex leaf image dataset. We then trained six deep learning models—GoogLeNet, ResNet50, ResNet101, DenseNet121, DenseNet169, and EfficientNet-B3—using a unified PyTorch framework on cloud computing resources. Leaf images were preprocessed by background removal, resizing, cropping, and normalization. Model performance was evaluated using accuracy, F1-score, and Grad-CAM visualizations. Under an image-level data split that may overestimate generalization, all six models achieved over 99% classification accuracy on preprocessed leaf images under controlled laboratory conditions. DenseNet121 and DenseNet169 performed best, reaching 99.65% accuracy. Because images of the same leaf or same plant could appear in both training and test sets under this split, plant-level cross-validation is required to assess real-world generalizability. The reported accuracies represent an upper-bound estimate under image-level splitting. The framework offers a rapid and accurate tool for preliminary screening under controlled conditions, but its performance on raw field photographs and across different collection sites remains to be validated.

Rising human-caused nitrogen (N) deposition and increased rainfall variability threaten the capacity of temperate forests to sequester carbon. However, the combined effects of N enrichment and moisture changes on total soil respiration (Rs), including its autotrophic (Ra) and heterotrophic (Rh) components, remain poorly understood, especially in northern China’s warm-temperate forests. To explore this, a factorial field experiment was conducted at the Beijing Yanshan Earth Critical Zone National Research Station in Huairou District, Beijing. The experiment involved N addition (50 kg N ha−1 yr−1 as urea [CO(NH2)2]) and precipitation manipulation (±50% of ambient throughfall) during the 2024 growing season. Six treatments were implemented: control (CK), nitrogen addition (NA), 50% increased precipitation (W+50%), 50% decreased precipitation (W−50%), nitrogen addition with increased precipitation (NW+50%), and nitrogen addition with decreased precipitation (NW−50%). Under natural rainfall conditions, N addition increased Rs (+11.8%; p < 0.05). However, the effects of N largely depended on water availability: with increased rainfall, N addition significantly boosted Rs, Rh, and Ra by promoting fine root biomass and accelerating litter decomposition; under reduced rainfall, N addition still increased Rs, Rh, and Ra compared to drought alone (NW−50% vs. W−50%), though the extent of stimulation was considerably lower than under elevated precipitation, indicating that water availability influences the strength of N effects on forest soil respiration. Structural equation modelling (SEM; χ2/df = 1.8, RMSEA = 0.040, CFI = 0.97) revealed that water availability was a key mediator of the interaction between N addition and precipitation. These findings enhance understanding of how nitrogen supply and water availability interact in temperate forest soils, though further validation across other forest types and over longer periods remains necessary.

Understanding the factors that determine the success of lichen translocations is critical for effective conservation of lichen biodiversity. Both physiological acclimation and the genetic structure of source populations can influence conservation outcomes. This study examined seasonal variation in physiological parameters (specific thallus mass—STM, chlorophyll a fluorescence—FV/FM, and chlorophyll content) of Lobaria pulmonaria (L.) Hoffm. across one year, selecting three source populations along a latitudinal gradient in Mediterranean forests in Italy. Genetic structure of their mycobiont and photobiont were also characterized. STM differed significantly among populations and seasons, with consistent increases from March to September. In contrast, FV/FM remained relatively stable, while chlorophyll content showed the highest values in December. Genetic analyses revealed clear differentiation among populations for both symbionts. These results suggest that L. pulmonaria can acclimate physiologically to seasonal environmental changes and highlight the importance of considering local genetic structure when selecting source populations for translocation. Integrating physiological and genetic information provides a robust framework for improving conservation strategies for this species.

To address the limited understanding of interspecific differences in eutrophic-water remediation, six representative wetland plants—Myriophyllum spicatum, Oenanthe javanica, Zizania latifolia, Ipomoea aquatica, Iris pseudacorus, and Typha orientalis—were evaluated in a unified hydroponic system. The removal efficiencies of total nitrogen (TN), total phosphorus (TP), and ammonium nitrogen (NH4+-N) were compared together with plant biomass accumulation and root-associated and fepiphytic microbial community characteristics. The results showed marked interspecific differences in growth and pollutant removal, with the M. spicatum treatment exhibiting the highest overall purification performance, achieving removal rates of 83.3% for NH4+-N, 87.3% for TN, and 78.6% for TP after 42 days. Community-composition analysis suggested that the superior purification performance of M. spicatum was associated with a greater relative abundance of Proteobacteria and putative nitrogen- and phosphorus-cycling bacterial groups. By integrating a plant-free control with a side-by-side comparison of six wetland plants under identical hydroponic conditions, this study establishes a comparative framework linking nutrient removal to plant growth and microbial community assembly. Overall, M. spicatum was identified as the most promising species, providing new insight for wetland-plant selection and eutrophic-water remediation.

The olive tree (Olea europaea L.) is one of the oldest known cultivated trees worldwide and an iconic species within the Mediterranean Basin. This study evaluated the impact of three bacterial strains, Bacillus subtilis D3, Paenibacillus tundrae M4, and Streptomyces tricolor HM10, on the mortality of the following four mite pests: Oxycenus niloticus, Tegolophus hassani, Aceria olivi, and Tetranychus urticae. B. subtilis D3 confirmed the highest efficacy, causing 91.84–85.36% mortality in laboratory tests and 88.90–84.12% in field trials after five days. In addition, P. tundrae M4 ranked second, achieving 90.49–84.26% mortality in the lab and 87.87–83.81% in the field after one week. S. tricolor HM10 produced 80.06–74.09% mortality in laboratory assays and 76.73–73.36% under the field conditions. Effects on the predatory mites Agistemus exsertus and Amblyseius swirskii were minimal, with mortality ranging from 13.28 to 18.55% in the lab work and 12.46–16.74% in the field experiment. Genome analysis of strain HM10 revealed a biosynthetic gene cluster with predicted terpenes production. Terpenes can cause chemo-osmotic stress and broad membrane-disrupting capabilities. These results highlight the promise of microbial agents for sustainable mite management and provide a foundation for further optimization of bacterial biocontrol strategies.

Livestock manure resources are abundant in the upper Yellow River basin on the eastern Tibetan Plateau, where rapeseed (Brassica napus L.) is grown under cold, short-season alpine conditions. To identify a suitable organic fertilizer substitution proportion, a two-year randomized complete block field experiment was conducted on Chestnut soil (Kastanozem) to compare mineral fertilization with 25%, 50%, 75%, and 100% replacement of mineral N by an organic fertilizer produced from composted cattle and sheep manure under equal total N, P, and K inputs. Grain yield was highest at 50% substitution, increasing by about 14% relative to mineral fertilization (p < 0.05), whereas 100% substitution slightly reduced yield. Increasing manure inputs enlarged soil organic carbon and total nutrient pools, but these increases were not accompanied by proportional increases in plant-available nutrients. Compared with mineral fertilization, 50% substitution increased available N, P, and K by about 18%, 34%, and 10%, respectively, and also increased the proportions of total N, P, and K present in available forms. Activities of the measured extracellular enzymes were generally 12–72% higher under 50% substitution than under mineral fertilization. A piecewise structural equation model indicated that yield improvement was associated mainly with greater nutrient uptake and recovery efficiency. Overall, moderate substitution best balanced nutrient accumulation, nutrient availability, efficiency, and productivity under the tested alpine conditions.

The increasing demand for sustainable pest management has positioned essential oils (EOs) as viable bio-based alternatives to synthetic pesticides. This study investigates the insecticidal potential of Haplopappus foliosus EO, a Chilean endemic medicinal plant, against Drosophila melanogaster as a key toxicological model for fruit fly control. Chemical characterization identified 56 compounds, with 4-terpineol (27.27%) and α-bisabolol (10.40%) as the primary constituents, marking the first report of α-bisabolol in this species. To enhance bioavailability and overcome EO volatility, a nanoemulsion was developed, achieving an exceptionally small and stable particle size of 2.10 nm that remained consistent for over 90 days. Nanoencapsulation significantly optimized the EO’s efficacy, reducing the median lethal concentration (LC50) from 120.26 µg/mL to a potent 54.57 µg/mL. While in vitro assays showed the free oil as a more potent acetylcholinesterase (AChE) inhibitor, molecular docking confirmed the high affinity of 4-terpineol and α-bisabolol for the enzyme’s active site, elucidating the neurotoxic mechanism at a molecular level. In silico analysis predicted a favorable human safety profile within GHS classes 4 and 5. Overall, this stable nanoformulation represents a sustainable biotechnological strategy for agricultural pest management, leveraging the synergistic effects and enhanced delivery of natural products.